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Bhide R, Phun GS, Ardo S. Elementary Reaction Steps That Precede or Follow a Unimolecular Reaction Step Can Obfuscate Interpretation of the Driving-Force Dependence to Its Rate Constant. J Phys Chem A 2024; 128:4177-4188. [PMID: 38752741 DOI: 10.1021/acs.jpca.3c08228] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/31/2024]
Abstract
Assessing the validity of a driving-force-dependent kinetic theory for a unimolecular elementary reaction step is difficult when the observed reaction rate is strongly influenced by properties of the preceding or following elementary reaction step. A well-known example occurs for bimolecular reactions with weak orbital overlap, such as outer-sphere electron transfer, where bimolecular collisional encounters that precede a fast unimolecular electron-transfer step can limit the observed rate. A lesser-appreciated example occurs for bimolecular reactions with stronger orbital overlap, including many proton-transfer reactions, where equilibration of an endergonic unimolecular proton-transfer step results in a relatively small concentration of reaction products, thus slowing the rate of the following step such that it becomes rate limiting. Incomplete consideration of these points has led to discrepancies in interpretation of data from the literature. Our reanalysis of these data suggests that proton-transfer elementary reaction steps have a nonzero intrinsic free energy barrier, implying, in the parlance of Marcus theory, that there is non-negligible nuclear reorganization. Outcomes from our analyses are generalizable to inner-sphere electron-transfer reactions such as those involved in (photo)electrochemical fuel-forming reactions.
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Affiliation(s)
- Rohit Bhide
- Department of Chemistry, University of California Irvine, Irvine, California 92697, United States
| | - Gabriel S Phun
- Department of Chemistry, University of California Irvine, Irvine, California 92697, United States
| | - Shane Ardo
- Department of Chemistry, University of California Irvine, Irvine, California 92697, United States
- Department of Chemical & Biomolecular Engineering, University of California Irvine, Irvine, California 92697, United States
- Department of Materials Science & Engineering, University of California Irvine, Irvine, California 92697, United States
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2
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Len’shina NA, Shurygina MP, Chesnokov SA. Photoreduction Reaction of Carbonyl-Containing Compounds in the Synthesis and Modification of Polymers. POLYMER SCIENCE SERIES B 2021. [DOI: 10.1134/s1560090421060130] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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3
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Kojima H, Yamada A, Okazaki S. A molecular dynamics study of intramolecular proton transfer reaction of malonaldehyde in solution based upon a mixed quantum–classical approximation. II. Proton transfer reaction in non-polar solvent. J Chem Phys 2015; 142:174502. [DOI: 10.1063/1.4919635] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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4
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Peters KS. A DFT investigation into the structure and energetics for nonadiabatic proton transfer in the benzophenone/ N, N-dimethylaniline contact radical ion pair. J PHYS ORG CHEM 2014. [DOI: 10.1002/poc.3354] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Kevin S. Peters
- Department of Chemistry and Biochemistry; University of Colorado; Boulder CO USA 80309
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5
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Abstract
Linus Pauling proposed that the large rate accelerations for enzymes are caused by the high specificity of the protein catalyst for binding the reaction transition state. The observation that stable analogues of the transition states for enzymatic reactions often act as tight-binding inhibitors provided early support for this simple and elegant proposal. We review experimental results that support the proposal that Pauling's model provides a satisfactory explanation for the rate accelerations for many heterolytic enzymatic reactions through high-energy reaction intermediates, such as proton transfer and decarboxylation. Specificity in transition state binding is obtained when the total intrinsic binding energy of the substrate is significantly larger than the binding energy observed at the Michaelis complex. The results of recent studies that aimed to characterize the specificity in binding of the enolate oxygen at the transition state for the 1,3-isomerization reaction catalyzed by ketosteroid isomerase are reviewed. Interactions between pig heart succinyl-coenzyme A:3-oxoacid coenzyme A transferase (SCOT) and the nonreacting portions of coenzyme A (CoA) are responsible for a rate increase of 3 × 10(12)-fold, which is close to the estimated total 5 × 10(13)-fold enzymatic rate acceleration. Studies that partition the interactions between SCOT and CoA into their contributing parts are reviewed. Interactions of the protein with the substrate phosphodianion group provide an ~12 kcal/mol stabilization of the transition state for the reactions catalyzed by triosephosphate isomerase, orotidine 5'-monophosphate decarboxylase, and α-glycerol phosphate dehydrogenase. The interactions of these enzymes with the substrate piece phosphite dianion provide a 6-8 kcal/mol stabilization of the transition state for reaction of the appropriate truncated substrate. Enzyme activation by phosphite dianion reflects the higher dianion affinity for binding to the enzyme-transition state complex compared with that of the free enzyme. Evidence is presented that supports a model in which the binding energy of the phosphite dianion piece, or the phosphodianion group of the whole substrate, is utilized to drive an enzyme conformational change from an inactive open form E(O) to an active closed form E(C), by closure of a phosphodianion gripper loop. Members of the enolase and haloalkanoic acid dehalogenase superfamilies use variable capping domains to interact with nonreacting portions of the substrate and sequester the substrate from interaction with bulk solvent. Interactions of this capping domain with the phenyl group of mandelate have been shown to activate mandelate racemase for catalysis of deprotonation of α-carbonyl carbon. We propose that an important function of these capping domains is to utilize the binding interactions with nonreacting portions of the substrate to activate the enzyme for catalysis.
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Affiliation(s)
- Tina L. Amyes
- Department of Chemistry, University at Buffalo, SUNY, Buffalo, New York 14260-3000
| | - John P. Richard
- To whom correspondence should be addressed: Tel: (716) 645 4232; Fax: (716) 645 6963;
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6
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Weinberg DR, Gagliardi CJ, Hull JF, Murphy CF, Kent CA, Westlake BC, Paul A, Ess DH, McCafferty DG, Meyer TJ. Proton-Coupled Electron Transfer. Chem Rev 2012; 112:4016-93. [DOI: 10.1021/cr200177j] [Citation(s) in RCA: 1125] [Impact Index Per Article: 93.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Affiliation(s)
- David R. Weinberg
- Department
of Chemistry, University
of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599-3290,
United States
- Department of Physical and Environmental
Sciences, Colorado Mesa University, 1100 North Avenue, Grand Junction,
Colorado 81501-3122, United States
| | - Christopher J. Gagliardi
- Department
of Chemistry, University
of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599-3290,
United States
| | - Jonathan F. Hull
- Department
of Chemistry, University
of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599-3290,
United States
| | - Christine Fecenko Murphy
- Department
of Chemistry, B219
Levine Science Research Center, Box 90354, Duke University, Durham,
North Carolina 27708-0354, United States
| | - Caleb A. Kent
- Department
of Chemistry, University
of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599-3290,
United States
| | - Brittany C. Westlake
- The American Chemical Society,
1155 Sixteenth Street NW, Washington, District of Columbia 20036,
United States
| | - Amit Paul
- Department
of Chemistry, University
of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599-3290,
United States
| | - Daniel H. Ess
- Department
of Chemistry, University
of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599-3290,
United States
| | - Dewey Granville McCafferty
- Department
of Chemistry, B219
Levine Science Research Center, Box 90354, Duke University, Durham,
North Carolina 27708-0354, United States
| | - Thomas J. Meyer
- Department
of Chemistry, University
of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599-3290,
United States
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7
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Kuznetsov A, Ulstrup J. Proton and proton-coupled electron transfer with paradigms towards single-molecule systems. J PHYS ORG CHEM 2010. [DOI: 10.1002/poc.1724] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
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8
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Kiefer PM, Hynes JT. Theoretical aspects of tunneling proton transfer reactions in a polar environment. J PHYS ORG CHEM 2010. [DOI: 10.1002/poc.1710] [Citation(s) in RCA: 46] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Edwards SJ, Soudackov AV, Hammes-Schiffer S. Driving force dependence of rates for nonadiabatic proton and proton-coupled electron transfer: conditions for inverted region behavior. J Phys Chem B 2009; 113:14545-8. [PMID: 19795899 PMCID: PMC2783471 DOI: 10.1021/jp907808t] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The driving force dependence of the rate constants for nonadiabatic electron transfer (ET), proton transfer (PT), and proton-coupled electron transfer (PCET) reactions is examined. Inverted region behavior, where the rate constant decreases as the reaction becomes more exoergic (i.e., as DeltaG(0) becomes more negative), has been observed experimentally for ET and PT. This behavior was predicted theoretically for ET but is not well understood for PT and PCET. The objective of this Letter is to predict the experimental conditions that could lead to observation of inverted region behavior for PT and PCET. The driving force dependence of the rate constant is qualitatively different for PT and PCET than for ET because of the high proton vibrational frequency and substantial shift between the reactant and product proton vibrational wave functions. As a result, inverted region behavior is predicted to be experimentally inaccessible for PT and PCET if only the driving force is varied. This behavior may be observed for PT over a limited range of rates and driving forces if the solvent reorganization energy is low enough to cause observable oscillations. Moreover, this behavior may be observed for PT or PCET if the proton donor-acceptor distance increases as DeltaG(0) becomes more negative. Thus, a plausible explanation for experimentally observed inverted region behavior for PT or PCET is that varying the driving force also impacts other properties of the system, such as the proton donor-acceptor distance.
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Abstract
For the past 60 years, the framework for understanding the kinetic behavior of proton transfer has been transition state theory. Found throughout textbooks, this theory, along with the Bell tunneling correction, serves as the standard model for the analysis of proton/hydrogen atom/hydride transfer. In comparison, a different theoretical model has recently emerged, one which proposes that the transition state occurs within the solvent coordinate, not the proton transfer coordinate, and proton transfer proceeds either adiabatically or nonadiabatically toward product formation. This Account discusses the central tenets of the new theoretical model of proton transfer, contrasts these with the standard transition state model, and presents a discrepancy that has arisen between our experimental studies on a nonadiabatic system and the current understanding of proton transfer. Transition state theory posits that in the proton transfer coordinate, the proton must surmount an electronic barrier prior to the formation of the product. This process is thermally activated, and the energy of activation is associated with the degree of bond making and bond breaking in the transition state. In the new model, the reaction path involves the initial fluctuation of the solvent, serving to bring the reactant state and the product state into resonance, at which time the proton is transferred either adiabatically or nonadiabatically to form the product. If this theory is correct, then all of the deductions derived from the standard model regarding the nature of the proton transfer process are called into question. For weakly hydrogen-bonded complexes, two sets of experiments are presented supporting the proposal that proton transfer occurs as a nonadiabatic process. In these studies, the correlation of rate constants to driving force reveals both a normal region and an inverted region for proton transfer. Yet, the experimentally observed kinetic behavior does not align with the recent theoretical formulation for nonadiabatic proton transfer, underscoring the gap in the collective understanding of proton transfer phenomena.
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Affiliation(s)
- Kevin S. Peters
- Department of Chemistry and Biochemistry, University of Colorado, Boulder, Colorado 80309
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11
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Pyszka I, Kucybała Z. The effect of co-initiator structure on photoinitiating efficiency of photoredox couples composed of quinoline[2,3-b]-1H-imidazo[1,2-a]pyridinium bromide and phenoxyacetic acid or N,N-dimethylaniline derivatives. Polym Bull (Berl) 2008. [DOI: 10.1007/s00289-008-0978-7] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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12
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Heeb LR, Peters KS. Nonadiabatic Proton/Deuteron Transfer within the Benzophenone−Triethylamine Triplet Contact Radical Ion Pair: Exploration of the Influence of Structure upon Reaction. J Phys Chem B 2007; 112:219-26. [DOI: 10.1021/jp073340g] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Libby R. Heeb
- Department of Chemistry and Biochemistry, University of Colorado, Boulder, Colorado 80309
| | - Kevin S. Peters
- Department of Chemistry and Biochemistry, University of Colorado, Boulder, Colorado 80309
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13
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Barroso M, Arnaut LG, Formosinho SJ. Absolute Rate Calculations. Proton Transfers in Solution. J Phys Chem A 2007; 111:591-602. [PMID: 17249748 DOI: 10.1021/jp065458n] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The reaction path of the intersecting-state model is used in transition-state theory with the semiclassical correction for tunneling (ISM/scTST) to calculate the rates of proton-transfer reactions from hydrogen-bond energies, reaction energies, electrophilicity indices, bond lengths, and vibration frequencies of the reactive bonds. ISM/scTST calculations do not involve adjustable parameters. The calculated proton-transfer rates are within 1 order of magnitude of the experimental ones at room temperature, and cover very diverse systems, such as deprotonations of nitroalkanes, ketones, HCN, carboxylic acids, and excited naphthols. The calculated temperature dependencies and kinetic isotope effects are also in good agreement with the experimental data. These calculations elucidate the roles of the reaction energy, electrophilicity, structural parameters, hydrogen bonds, tunneling, and solvent in the reactivity of acids and bases. The efficiency of the method makes it possible to run absolute rate calculations through the Internet.
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Affiliation(s)
- Monica Barroso
- Chemistry Department, University of Coimbra, P-3049 Coimbra Codex, Portugal
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Sakamoto M, Cai X, Fujitsuka M, Majima T. Solvent Effect on the Deactivation Processes of Benzophenone Ketyl Radicals in the Excited State. J Phys Chem A 2006; 110:11800-8. [PMID: 17048811 DOI: 10.1021/jp060129g] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Abstract
The solvent effects on ketyl radicals of benzophenone derivatives (BPD) in the excited state (BPDH*(D1)) were investigated. Absorption and fluorescence spectra of BPDH*(D1) in various solvents were measured using nanosecond-picosecond two-color two-laser flash photolysis. The fluorescence peaks from BPDH*(D1) showed a shift due to the dipole-dipole interaction with the solvent molecules. The dipole moments (mu(e)) of BPDH*(D1) were estimated to be 7-10 D, indicating that BPDH*(D1) are highly polarized. It was revealed that the fluorescence lifetime (tau(f)) depends on mu(e) in acetonitrile because the stabilization by solvent molecules affects the tau(f) value in polar solvents, predominantly. On the contrary, the conformation of BPDH*(D1) plays an important role in cyclohexane because the efficiency of the unimolecular reaction from BPDH*(D1) depends on the conformation. The substituent effect on the electron transfer from BPDH*(D1) to their parent molecules was also discussed.
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Affiliation(s)
- Masanori Sakamoto
- The Institute of Scientific and Industrial Research (SANKEN), Osaka University, Mihogaoka 8-1, Ibaraki, Osaka 567-0047, Japan
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15
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Heeb LR, Peters KS. Further Evidence of an Inverted Region in Proton Transfer within the Benzophenone/Substituted Aniline Contact Radical Ion Pairs; Importance of Vibrational Reorganization Energy. J Phys Chem A 2006; 110:6408-14. [PMID: 16706395 DOI: 10.1021/jp056188w] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The dynamics of proton transfer within the triplet contact radical ion pair of a variety of substituted benzophenones with N,N-diethylaniline, N,N-dimethyl-p-toluinide, and N,N-diallylaniline are examined in solvents of varying polarity. The correlation of the rate constants with driving force reveal both a normal region and an inverted region providing support for the nonadiabatic nature of proton transfer within these systems. The reorganization of both the solvent and the molecular framework are central in governing the overall reaction dynamics.
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Affiliation(s)
- Libby R Heeb
- Department of Chemistry and Biochemistry, University of Colorado, Boulder, Colorado 80309, USA
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Sakamoto M, Cai X, Fujitsuka M, Majima T. Properties of Excited Ketyl Radicals of Benzophenone Analogues Affected by the Size and Electronic Character of the Aromatic Ring Systems. Chemistry 2006; 12:1610-7. [PMID: 16311988 DOI: 10.1002/chem.200500409] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
The properties of benzophenone ketyl radical analogues with large aromatic ring systems, such as naphthylphenylketone (2), 4-benzoylbiphenyl (3), and bis(biphenyl-4-yl)methanone (4), were investigated in the excited state by using nanosecond-picosecond two-color two-laser flash photolysis. Fluorescence and transient absorption spectra of ketyl radicals of 2-4 in the excited state were observed for the first time. The fluorescence and properties of the excited ketyl radicals were significantly affected by the size and electronic properties of the aromatic ring systems. The reactivity of the ketyl radicals in the excited state with several quenchers was examined and they were found to show reactivity toward N,N-diethylaniline. In addition, for the benzophenone ketyl radical, a unique quenching process of the radical in the excited state by the ground-state parent molecule was found. The factors regulating the fluorescence lifetime of the ketyl radicals in the excited state are discussed quantitatively.
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Affiliation(s)
- Masanori Sakamoto
- The Institute of Scientific and Industrial Research (SANKEN), Osaka University, Mihogaoka 8-1, Ibaraki, Osaka 567-0047, Japan
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Sakamoto M, Cai X, Fujitsuka M, Majima T. Dual Electron Transfer Pathways from 4,4‘-Dimethoxybenzophenone Ketyl Radical in the Excited State to Parent Molecule in the Ground State. J Phys Chem A 2005; 109:6830-5. [PMID: 16834038 DOI: 10.1021/jp052784e] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Abstract
Dual intermolecular electron transfer (ELT) pathways from 4,4'-dimethoxybenzophenone (1) ketyl radical (1H*) in the excited state [1H*(D1)] to the ground-state 4,4'-dimethoxybenzophenone [1(S0)] were found in 2-methyltetrahydrofuran (MTHF) by observing bis(4-methoxyphenyl)methanol cation (1H+) and 4,4'-dimethoxybenzophenone radical anion (1*-) during nanosecond-picosecond two-color two-laser flash photolysis. ELT pathway I involved the two-photon ionization of 1H* following the injection of electron to the solvent. The solvated electron was quickly trapped by 1(S0) to produce 1*-. ELT pathway II was a self-quenching-like ELT from 1H*(D1) to 1(S0) to give 1H+ and 1*-. From the fluorescence quenching of 1H*(D1), the ELT rate constant was determined to be 1.0 x 10(10) M(-1) s(-1), which is close to the diffusion-controlled rate constant of MTHF. The self-quenching-like ELT mechanism was discussed on the basis of Marcus' ELT theory.
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Affiliation(s)
- Masanori Sakamoto
- The Institute of Scientific and Industrial Research (SANKEN), Osaka University, Mihogaoka 8-1, Ibaraki, Osaka 567-0047, Japan
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Sundararajan C, Falvey DE. Photolytic Release of Carboxylic Acids Using Linked Donor−Acceptor Molecules: Direct versus Mediated Photoinduced Electron Transfer to N-Alkyl-4-picolinium Esters. Org Lett 2005; 7:2631-4. [PMID: 15957908 DOI: 10.1021/ol050744n] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
[reaction: see text] Efficient photorelease (Phi = 0.7) of carboxylic acids is achieved with a covalently linked mediator (benzophenone) protecting group (N-alkyl-4-picolinium ester) molecule. The mechanism involves initial photoreduction of the mediator, followed by rapid electron transfer to the protecting group.
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Affiliation(s)
- Chitra Sundararajan
- Department of Chemistry and Biochemistry, University of Maryland, College Park, Maryland 20742, USA
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Abstract
The absorption of a photon by a hydroxy-aromatic photoacid triggers a cascade of events contributing to the overall phenomenon of intermolecular excited-state proton transfer. The fundamental steps involved were studied over the last 20 years using a combination of theoretical and experimental techniques. They are surveyed in this sequel in sequential order, from fast to slow. The excitation triggers an intramolecular charge transfer to the ring system, which is more prominent for the anionic base than the acid. The charge redistribution, in turn, triggers changes in hydrogen-bond strengths that set the stage for the proton-transfer step itself. This step is strongly influenced by the solvent, resulting in unusual dependence of the dissociation rate coefficient on water content, temperature, and isotopic substitution. The photolyzed proton can diffuse in the aqueous solution in a mechanism that involves collective changes in hydrogen-bonding. On longer times, it may recombine adiabatically with the excited base or quench it. The theory for these diffusion-influenced geminate reactions has been developed, showing nice agreement with experiment. Finally, the effect of inert salts, bases, and acids on these reactions is analyzed.
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Affiliation(s)
- Noam Agmon
- Department of Physical Chemistry and the Fritz Haber Research Center, The Hebrew University, Jerusalem 91904, Israel.
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Peters KS, Kim G. Kinetic isotope effects for non-adiabatic proton transfer in benzophenone?N-methylacridan contact radical ion pairs. J PHYS ORG CHEM 2004. [DOI: 10.1002/poc.849] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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