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Trepte K, Schaber J, Schwalbe S, Drache F, Senkovska I, Kaskel S, Kortus J, Brunner E, Seifert G. The origin of the measured chemical shift of 129Xe in UiO-66 and UiO-67 revealed by DFT investigations. Phys Chem Chem Phys 2018; 19:10020-10027. [PMID: 28362453 DOI: 10.1039/c7cp00852j] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Abstract
The NMR chemical shift of the xenon isotope 129Xe inside the metal-organic frameworks (MOFs) UiO-66 and UiO-67 (UiO - University of Oslo) has been investigated both with density functional theory (DFT) and in situ high-pressure 129Xe NMR measurements. The experiments reveal a decrease of the total chemical shift comparing the larger isoreticular MOF (UiO-67) with the smaller one (UiO-66), even though one may expect an increase due to the higher amount of adsorbed Xe atoms. We are able to calculate contributions to the chemical shift individually. This allows us to evaluate the shift inside the different pores independently. To compare the theoretical results with the experimental ones, we performed molecular dynamics simulations of Xe in the MOFs. For this purpose, the pores were completely filled with Xe to gain insight into the distribution of Xe at high pressures. The resulting trend of the total shift agrees well between the theoretical predictions and the experiments. Moreover, we are able to describe specific contributions to the total shift per pore, explaining the experimental behavior at an atomistic level.
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Affiliation(s)
- Kai Trepte
- Technische Universität Dresden, Theoretical Chemistry, Germany.
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Aucar IA, Gomez SS, Giribet CG, Aucar GA. Role of Spin-Dependent Terms in the Relationship among Nuclear Spin-Rotation and NMR Magnetic Shielding Tensors. J Phys Chem Lett 2016; 7:5188-5192. [PMID: 27973906 DOI: 10.1021/acs.jpclett.6b02361] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
The broadly accepted procedure to obtain the experimental absolute scale of NMR magnetic shieldings, σ, is well-known for nonheavy atom-containing molecules. It was uncovered more than 40 years ago by the works of Ramsey and Flygare. They found a quite accurate relationship among σ and the nuclear spin-rotation constants. Its relativistic extension was very recently proposed, although it has an intrinsic weakness because a new SO-S two-component term needs to be considered. We show how to overcome this problem. We found that (νYS - νYatom,S) generalizes the SO-S term, where νYS = ⟨⟨[((r - rY) × α)/(|r - rY|3)]; S(4)⟩⟩, r - rY is the electron position with respect to the position of nucleus Y, and S(4) is the four-component total electron spin. When including this new term, one finds that the best of our relativistic Flygare-like models fits quite well with the results of the most accurate method available at the moment. We also show that the difference among the parallel component of σ(Xe) in XeF2 and σ(Xe) of the free atom is almost completely described by that new term.
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Affiliation(s)
- I Agustín Aucar
- Instituto de Modelado e Innovación Tecnológica, CONICET, and Departamento de Física, FCENA-UNNE, Avda. Libertad 5460, W3404AAS Corrientes, Argentina
| | - Sergio S Gomez
- Instituto de Modelado e Innovación Tecnológica, CONICET, and Departamento de Física, FCENA-UNNE, Avda. Libertad 5460, W3404AAS Corrientes, Argentina
| | - Claudia G Giribet
- Instituto de Fı́sica de Buenos Aires, CONICET, and Departamento de Fı́sica, FCEN-UBA, Ciudad Universitaria, C1428EGA Buenos Aires, Argentina
| | - Gustavo A Aucar
- Instituto de Modelado e Innovación Tecnológica, CONICET, and Departamento de Física, FCENA-UNNE, Avda. Libertad 5460, W3404AAS Corrientes, Argentina
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Cheng L, Gauss J, Stanton JF. Treatment of scalar-relativistic effects on nuclear magnetic shieldings using a spin-free exact-two-component approach. J Chem Phys 2013; 139:054105. [DOI: 10.1063/1.4816130] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023] Open
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Aucar IA, Gómez SS, Melo JI, Giribet CC, Ruiz de Azúa MC. Theoretical study of the nuclear spin-molecular rotation coupling for relativistic electrons and non-relativistic nuclei. II. Quantitative results in HX (X=H,F,Cl,Br,I) compounds. J Chem Phys 2013; 138:134107. [DOI: 10.1063/1.4796461] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Yoshizawa T, Sakaki S. NMR shielding constants of CuX, AgX, and AuX (X = F, Cl, Br, and I) investigated by density functional theory based on the Douglas-Kroll-Hess Hamiltonian. J Comput Chem 2013; 34:1013-23. [DOI: 10.1002/jcc.23224] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2012] [Revised: 12/11/2012] [Accepted: 12/13/2012] [Indexed: 11/11/2022]
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Autschbach J. Relativistic Effects on NMR Parameters. SCIENCE AND TECHNOLOGY OF ATOMIC, MOLECULAR, CONDENSED MATTER & BIOLOGICAL SYSTEMS 2013. [DOI: 10.1016/b978-0-444-59411-2.00004-6] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
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Lantto P, Kangasvieri S, Vaara J. Rovibrational effects on NMR shieldings in a heavy-element system: XeF2. J Chem Phys 2012; 137:214309. [DOI: 10.1063/1.4768471] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023] Open
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Bai Y, Hill PA, Dmochowski IJ. Utilizing a water-soluble cryptophane with fast xenon exchange rates for picomolar sensitivity NMR measurements. Anal Chem 2012; 84:9935-41. [PMID: 23106513 DOI: 10.1021/ac302347y] [Citation(s) in RCA: 56] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Abstract
Hyperpolarized (129)Xe chemical exchange saturation transfer ((129)Xe Hyper-CEST) NMR is a powerful technique for the ultrasensitive, indirect detection of Xe host molecules (e.g., cryptophane-A). Irradiation at the appropriate Xe-cryptophane resonant radio frequency results in relaxation of the bound hyperpolarized (129)Xe and rapid accumulation of depolarized (129)Xe in bulk solution. The cryptophane effectively "catalyzes" this process by providing a unique molecular environment for spin depolarization to occur, while allowing xenon exchange with the bulk solution during the hyperpolarized lifetime (T(1) ≈ 1 min). Following this scheme, a triacetic acid cryptophane-A derivative (TAAC) was indirectly detected at 1.4 picomolar concentration at 320 K in aqueous solution, which is the record for a single-unit xenon host. To investigate this sensitivity enhancement, the xenon binding kinetics of TAAC in water was studied by NMR exchange lifetime measurement. At 297 K, k(on) ≈ 1.5 × 10(6) M(-1) s(-1) and k(off) = 45 s(-1), which represent the fastest Xe association and dissociation rates measured for a high-affinity, water-soluble xenon host molecule near rt. NMR line width measurements provided similar exchange rates at rt, which we assign to solvent-Xe exchange in TAAC. At 320 K, k(off) was estimated to be 1.1 × 10(3) s(-1). In Hyper-CEST NMR experiments, the rate of (129)Xe depolarization achieved by 14 pM TAAC in the presence of radio frequency (RF) pulses was calculated to be 0.17 μM·s(-1). On a per cryptophane basis, this equates to 1.2 × 10(4)(129)Xe atoms s(-1) (or 4.6 × 10(4) Xe atoms s(-1), all Xe isotopes), which is more than an order of magnitude faster than k(off), the directly measurable Xe-TAAC exchange rate. This compels us to consider multiple Xe exchange processes for cryptophane-mediated bulk (129)Xe depolarization, which provide at least 10(7)-fold sensitivity enhancements over directly detected hyperpolarized (129)Xe NMR signals.
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Affiliation(s)
- Yubin Bai
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, United States
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Abstract
We have investigated several building stone materials, including minerals and rocks, using continuous flow hyperpolarized xenon (CF-HP) NMR spectroscopy to probe the surface composition and porosity. Chemical shift and line width values are consistent with petrographic information. Rare upfield shifts were measured and attributed to the presence of transition metal cations on the surface. The evolution of freshly cleaved rocks exposed to the atmosphere was also characterized. The CF-HP 129Xe NMR technique is non-destructive and it could complement currently used techniques, like porosimetry and microscopy, providing additional information on the chemical nature of the rock surface and its evolution.
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Autschbach J, Sutter K, Truflandier LA, Brendler E, Wagler J. Atomic Contributions from Spin-Orbit Coupling to29Si NMR Chemical Shifts in Metallasilatrane Complexes. Chemistry 2012; 18:12803-13. [DOI: 10.1002/chem.201200746] [Citation(s) in RCA: 50] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2012] [Indexed: 11/11/2022]
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Aucar IA, Gómez SS, de Azúa MCR, Giribet CG. Theoretical study of the nuclear spin-molecular rotation coupling for relativistic electrons and non-relativistic nuclei. J Chem Phys 2012; 136:204119. [DOI: 10.1063/1.4721627] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022] Open
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Cukras J, Sadlej J. Theoretical predictions of the spectroscopic parameters in noble-gas molecules: HXeOH and its complex with water. Phys Chem Chem Phys 2011; 13:15455-67. [PMID: 21804992 DOI: 10.1039/c1cp21359h] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We employ state-of-the-art methods and basis sets to study the effect of inserting the Xe atom into the water molecule and the water dimer on their NMR parameters. Our aim is to obtain predictions for the future experimental investigation of novel xenon complexes by NMR spectroscopy. Properties such as molecular structure and energetics have been studied by supermolecular approaches using HF, MP2, CCSD, CCSD(T) and MP4 methods. The bonding in HXeOH···H(2)O complexes has been analyzed by Symmetry-Adapted Perturbation Theory to provide the intricate insight into the nature of the interaction. We focus on vibrational spectra, NMR shielding and spin-spin coupling constants-experimental signals that reflect the electronic structures of the compounds. The parameters have been calculated at electron-correlated and Dirac-Hartree-Fock relativistic levels. This study has elucidated that the insertion of the Xe atom greatly modifies the NMR properties, including both the electron correlation and relativistic effects, the (129)Xe shielding constants decrease in HXeOH and HXeOH···H(2)O in comparison to Xe atom; the (17)O, as a neighbour of Xe, is deshielded too. The HXeOH···H(2)O complex in its most stable form is stabilized mainly by induction and dispersion energies.
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Affiliation(s)
- Janusz Cukras
- Department of Chemistry, University of Warsaw, Pasteura 1, 02-093 Warsaw, Poland
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Gómez SS, Aucar GA. Relativistic effects on the nuclear magnetic resonance shielding of FX (X = F, Cl, Br, I, and At) molecular systems. J Chem Phys 2011; 134:204314. [DOI: 10.1063/1.3587051] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023] Open
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Ruiz de Azúa MC, Giribet CG, Melo JI. NMR nuclear magnetic shielding anisotropy of linear molecules within the linear response within the elimination of the small component approach. J Chem Phys 2011; 134:034123. [DOI: 10.1063/1.3528717] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022] Open
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Truflandier LA, Brendler E, Wagler J, Autschbach J. 29
Si DFT/NMR Observation of Spin–Orbit Effect in Metallasilatrane Sheds Some Light on the Strength of the Metal→Silicon Interaction. Angew Chem Int Ed Engl 2010; 50:255-9. [DOI: 10.1002/anie.201005431] [Citation(s) in RCA: 64] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Lionel A. Truflandier
- Department of Chemistry, 312 Natural Sciences Complex, State University of New York at Buffalo, Buffalo, NY 14260‐3000 (USA), Fax: (+1) 716‐645‐6963
| | - Erica Brendler
- Institut für Analytische Chemie, Technische Universität Bergakademie Freiberg, 09596 Freiberg (Germany)
| | - Jörg Wagler
- Institut für Anorganische Chemie, Technische Universität Bergakademie Freiberg, 09596 Freiberg (Germany)
| | - Jochen Autschbach
- Department of Chemistry, 312 Natural Sciences Complex, State University of New York at Buffalo, Buffalo, NY 14260‐3000 (USA), Fax: (+1) 716‐645‐6963
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Truflandier LA, Brendler E, Wagler J, Autschbach J. 29
Si DFT/NMR Observation of Spin–Orbit Effect in Metallasilatrane Sheds Some Light on the Strength of the Metal→Silicon Interaction. Angew Chem Int Ed Engl 2010. [DOI: 10.1002/ange.201005431] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Lionel A. Truflandier
- Department of Chemistry, 312 Natural Sciences Complex, State University of New York at Buffalo, Buffalo, NY 14260‐3000 (USA), Fax: (+1) 716‐645‐6963
| | - Erica Brendler
- Institut für Analytische Chemie, Technische Universität Bergakademie Freiberg, 09596 Freiberg (Germany)
| | - Jörg Wagler
- Institut für Anorganische Chemie, Technische Universität Bergakademie Freiberg, 09596 Freiberg (Germany)
| | - Jochen Autschbach
- Department of Chemistry, 312 Natural Sciences Complex, State University of New York at Buffalo, Buffalo, NY 14260‐3000 (USA), Fax: (+1) 716‐645‐6963
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Li Z, Chen X, Shan X, Xue X, Liu T, Xu K. Experimental observation of relativistic effects on electronic wavefunction for iodine lone-pair orbital of CF3I. Chem Phys Lett 2008. [DOI: 10.1016/j.cplett.2008.04.007] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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Casabianca LB, de Dios AC. Ab initiocalculations of NMR chemical shifts. J Chem Phys 2008; 128:052201. [DOI: 10.1063/1.2816784] [Citation(s) in RCA: 100] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023] Open
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Hanni M, Lantto P, Iliaš M, Jensen HJA, Vaara J. Relativistic effects in the intermolecular interaction-induced nuclear magnetic resonance parameters of xenon dimer. J Chem Phys 2007; 127:164313. [DOI: 10.1063/1.2777143] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023] Open
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22
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Lantto P, Vaara J. Xe129 chemical shift by the perturbational relativistic method: Xenon fluorides. J Chem Phys 2007; 127:084312. [PMID: 17764253 DOI: 10.1063/1.2759205] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
(129)Xe nuclear shielding tensor is calculated at the leading-order, one-electron Breit-Pauli perturbation theory (BPPT) level for the xenon fluorides XeF(+), XeF(2), XeF(3) (+), and XeF(4) that cover the large nuclear magnetic resonance chemical shift range of this nucleus. BPPT is found to improve the shift range and relative shifts as compared to the nonrelativistic (NR) theory. While the full BPPT expansion consists of 16 relativistic terms, 5 of them are responsible for the entire chemical shift and shielding anisotropy. The remaining terms are practically isotropic, corelike contributions that are significant for the absolute shielding constant but cancel for the relative chemical shifts. The five principal terms are due to the spin-orbit-modified wave function allowing the Fermi contact and spin-dipole hyperfine interactions to be coupled to the orbital Zeeman interaction, as well as three distinct scalar relativistic modifications of the NR paramagnetic shielding: wave function change due to mass-velocity and Darwin interactions and the relativistic modification of the orbital hyperfine interaction. A very good agreement with the experimental shifts is obtained for XeF(2) and the particularly challenging XeF(+) species when both the NR and the five main relativistic terms are calculated at electron-correlated ab initio levels of theory. The performance of density-functional theory (DFT) with different pure and hybrid exchange-correlation functionals (with increasing exact exchange admixture) is tested against the ab initio data for each individual contribution. It is shown that DFT has difficulties in the description of paramagnetic shielding, already and especially in the NR contribution, which causes a large discrepancy of DFT results with experiment for xenon fluorides. In contrast, the DFT errors for the relativistic terms cancel out to the extent that a fairly good approximation of the total relativistic shift and anisotropy contributions may be obtained. A combination of high-level ab initio NR calculation with hybrid DFT estimates of the five main BPPT terms is proposed for reasonable estimates of xenon chemical shift in molecules. For the difficult cases such as the present XeF(+) and XeF(3) (+) cations, correlated ab initio calculations are unavoidable throughout. None of the other currently available relativistic methods, either at the fully relativistic or a variationally stable quasirelativistic levels of theory, surpasses the quality of the present approach for Xe shifts in these systems.
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Affiliation(s)
- Perttu Lantto
- Laboratory of Physical Chemistry, Department of Chemistry, University of Helsinki, P.O. Box 55 (A.I. Virtasen aukio 1), FIN-00014 Helsinki, Finland.
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Kudo K, Maeda H, Kawakubo T, Ootani Y, Funaki M, Fukui H. Relativistic calculation of nuclear magnetic shielding using normalized elimination of the small component. J Chem Phys 2006; 124:224106. [PMID: 16784262 DOI: 10.1063/1.2204606] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022] Open
Abstract
The normalized elimination of the small component (NESC) theory, recently proposed by Filatov and Cremer, is extended to include magnetic interactions and applied to the calculation of the nuclear magnetic shielding in HX (X=F, Cl, Br, I) systems. The NESC calculations are performed at the levels of the zeroth-order regular approximation (ZORA) and the second-order regular approximation (SORA). The calculations show that the NESC-ZORA results are very close to the NESC-SORA results, except for the shielding of the I nucleus. Both the NESC-ZORA and NESC-SORA calculations yield very similar results to the previously reported values obtained using the relativistic infinite-order two-component coupled Hartree-Fock method. The difference between NESC-ZORA and NESC-SORA results is significant for the shieldings of iodine.
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Affiliation(s)
- K Kudo
- Kitami Institute of Technology, 165 Koencho, Kitami 090-8507, Japan
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Kudo K, Ootani Y, Funaki M, Fukui H. Relativistic calculation of nuclear magnetic shieldings of xenon difluoride. J Chem Phys 2006; 124:116101. [PMID: 16555919 DOI: 10.1063/1.2173999] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022] Open
Affiliation(s)
- K Kudo
- Kitami Institute of Technology, 165 Koencho, Kitami 090-8507, Japan
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Gong XQ, Selloni A, Vittadini A. Density Functional Theory Study of Formic Acid Adsorption on Anatase TiO2(001): Geometries, Energetics, and Effects of Coverage, Hydration, and Reconstruction. J Phys Chem B 2006; 110:2804-11. [PMID: 16471889 DOI: 10.1021/jp056572t] [Citation(s) in RCA: 202] [Impact Index Per Article: 11.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
We present density functional theory calculations and first-principles molecular dynamics simulations of formic acid adsorption on anatase TiO(2)(001), the minority surface exposed by anatase TiO(2) nanoparticles. A wide range of factors that may affect formic acid adsorption, such as coverage, surface hydration, and reconstruction, are considered. It is found that (i) formic acid dissociates spontaneously on unreconstructed clean TiO(2)(001)-1 x 1, as well as on the highly reactive ridge of the reconstructed TiO(2)(001)-1 x 4 surface; (ii) on both the 1 x 1 and 1 x 4 surfaces, various configurations of dissociated formic acid exist with adsorption energies of about 1.5 eV, which very weakly depend on the coverage; (iii) bidentate adsorption configurations, in which the formate moiety binds to the surface through two Ti-O bonds, are energetically more favored than monodentate ones; (iv) partial hydration of TiO(2)(001)-1 x 1 tends to favor the bidentate chelating configuration with respect to the bridging one but has otherwise little effect on the adsorption energetics; and (v) physical adsorption of formic acid on fully hydrated TiO(2)(001)-1 x 1 is also fairly strong. Comparison of the present results for formic acid adsorption with those for water and methanol under similar conditions provides valuable insights to the understanding of recent experimental results concerning the coadsorption of these molecules.
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Affiliation(s)
- Xue-Qing Gong
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, USA.
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