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Kim H, Kim JG, Kim TW, Lee SJ, Nozawa S, Adachi SI, Yoon K, Kim J, Ihee H. Ultrafast structural dynamics of in-cage isomerization of diiodomethane in solution. Chem Sci 2020; 12:2114-2120. [PMID: 34163975 PMCID: PMC8179290 DOI: 10.1039/d0sc05108j] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Despite extensive studies on the isomer species formed by photodissociation of haloalkanes in solution, the molecular structure of the precursor of the isomer, which is often assumed to be a vibrationally hot isomer formed from the radical pair, and its in-cage isomerization mechanism remain elusive. Here, the structural dynamics of CH2I2 upon 267 nm photoexcitation in methanol were probed with femtosecond X-ray solution scattering at an X-ray free-electron laser. The determined molecular structure of the transiently formed species that converts to the CH2I–I isomer has the I–I distance of 4.17 Å, which is longer than that of the isomer (3.15 Å) by more than 1.0 Å and the mean-squared displacement of 0.45 Å2, which is about 100 times larger than those of typical regular chemical bonds. These unusual structural characteristics are consistent with either a vibrationally hot form of the CH2I–I isomer or the loosely-bound radical pair (CH2I˙⋯I˙). The structural dynamics of in-cage isomerization of CH2I2 and the unusual structure of the loosely-bound isomer precursor were unveiled with femtosecond X-ray liquidography (solution scattering).![]()
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Affiliation(s)
- Hanui Kim
- Department of Chemistry, Korea Advanced Institute of Science and Technology (KAIST) Daejeon 34141 Republic of Korea .,KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST) Daejeon 34141 Republic of Korea.,Center for Nanomaterials and Chemical Reactions, Institute for Basic Science (IBS) Daejeon 34141 Republic of Korea
| | - Jong Goo Kim
- Center for Nanomaterials and Chemical Reactions, Institute for Basic Science (IBS) Daejeon 34141 Republic of Korea
| | - Tae Wu Kim
- Center for Nanomaterials and Chemical Reactions, Institute for Basic Science (IBS) Daejeon 34141 Republic of Korea
| | - Sang Jin Lee
- Department of Chemistry, Korea Advanced Institute of Science and Technology (KAIST) Daejeon 34141 Republic of Korea .,KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST) Daejeon 34141 Republic of Korea.,Center for Nanomaterials and Chemical Reactions, Institute for Basic Science (IBS) Daejeon 34141 Republic of Korea
| | - Shunsuke Nozawa
- Photon Factory, Institute of Materials Structure Science, High Energy Accelerator Research Organization (KEK) Tsukuba Ibaraki 305-0801 Japan.,Department of Materials Structure Science, School of High Energy Accelerator Science, The Graduate University for Advanced Studies Tsukuba Ibaraki 305-0801 Japan
| | - Shin-Ichi Adachi
- Photon Factory, Institute of Materials Structure Science, High Energy Accelerator Research Organization (KEK) Tsukuba Ibaraki 305-0801 Japan.,Department of Materials Structure Science, School of High Energy Accelerator Science, The Graduate University for Advanced Studies Tsukuba Ibaraki 305-0801 Japan
| | - Kihwan Yoon
- Department of Chemistry, The Catholic University of Korea Bucheon 14662 Republic of Korea
| | - Joonghan Kim
- Department of Chemistry, The Catholic University of Korea Bucheon 14662 Republic of Korea
| | - Hyotcherl Ihee
- Department of Chemistry, Korea Advanced Institute of Science and Technology (KAIST) Daejeon 34141 Republic of Korea .,KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST) Daejeon 34141 Republic of Korea.,Center for Nanomaterials and Chemical Reactions, Institute for Basic Science (IBS) Daejeon 34141 Republic of Korea
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2
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Park S, Choi J, Ki H, Kim KH, Oang KY, Roh H, Kim J, Nozawa S, Sato T, Adachi SI, Kim J, Ihee H. Fate of transient isomer of CH 2I 2: Mechanism and origin of ionic photoproducts formation unveiled by time-resolved x-ray liquidography. J Chem Phys 2019; 150:224201. [PMID: 31202228 DOI: 10.1063/1.5099002] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023] Open
Abstract
Diiodomethane, CH2I2, in a polar solvent undergoes a unique photoinduced reaction whereby I2 - and I3 - are produced from its photodissociation, unlike for other iodine-containing haloalkanes. While previous studies proposed that homolysis, heterolysis, or solvolysis of iso-CH2I-I, which is a major intermediate of the photodissociation, can account for the formation of I2 - and I3 -, there has been no consensus on its mechanism and no clue for the reason why those negative ionic species are not observed in the photodissociation of other iodine-containing chemicals in the same polar solvent, for example, CHI3, C2H4I2, C2F4I2, I3 -, and I2. Here, using time-resolved X-ray liquidography, we revisit the photodissociation mechanism of CH2I2 in methanol and determine the structures of all transient species and photoproducts involved in its photodissociation and reveal that I2 - and I3 - are formed via heterolysis of iso-CH2I-I in the photodissociation of CH2I2 in methanol. In addition, we demonstrate that the high polarity of iso-CH2I-I is responsible for the unique photochemistry of CH2I2.
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Affiliation(s)
- Sungjun Park
- Department of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, South Korea
| | - Jungkweon Choi
- Center for Nanomaterials and Chemical Reactions, Institute for Basic Science (IBS), Daejeon 34141, South Korea
| | - Hosung Ki
- Center for Nanomaterials and Chemical Reactions, Institute for Basic Science (IBS), Daejeon 34141, South Korea
| | - Kyung Hwan Kim
- Department of Chemistry, Pohang University of Science and Technology (POSTECH), Pohang 37673, South Korea
| | - Key Young Oang
- Radiation Center for Ultrafast Science, Quantum Optics Division, Korea Atomic Energy Research Institute (KAERI), Daejeon 34057, South Korea
| | - Heegwang Roh
- Department of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, South Korea
| | - Joonghan Kim
- Department of Chemistry, The Catholic University of Korea, Bucheon 14662, South Korea
| | - Shunsuke Nozawa
- Institute of Materials Structure Science, High Energy Accelerator Research Organization, 1-1 Oho, Tsukuba, Ibaraki 305-0801, Japan
| | - Tokushi Sato
- Institute of Materials Structure Science, High Energy Accelerator Research Organization, 1-1 Oho, Tsukuba, Ibaraki 305-0801, Japan
| | - Shin-Ichi Adachi
- Institute of Materials Structure Science, High Energy Accelerator Research Organization, 1-1 Oho, Tsukuba, Ibaraki 305-0801, Japan
| | - Jeongho Kim
- Department of Chemistry, Inha University, 100 Inha-ro, Michuhol-gu, Incheon 22212, South Korea
| | - Hyotcherl Ihee
- Department of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, South Korea
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Marcellini M, Nasedkin A, Zietz B, Petersson J, Vincent J, Palazzetti F, Malmerberg E, Kong Q, Wulff M, van der Spoel D, Neutze R, Davidsson J. Transient isomers in the photodissociation of bromoiodomethane. J Chem Phys 2018; 148:134307. [PMID: 29626862 DOI: 10.1063/1.5005595] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022] Open
Abstract
The photochemistry of halomethanes is fascinating for the complex cascade reactions toward either the parent or newly synthesized molecules. Here, we address the structural rearrangement of photodissociated CH2IBr in methanol and cyclohexane, probed by time-resolved X-ray scattering in liquid solution. Upon selective laser cleavage of the C-I bond, we follow the reaction cascade of the two geminate geometrical isomers, CH2I-Br and CH2Br-I. Both meta-stable isomers decay on different time scales, mediated by solvent interaction, toward the original parent molecule. We observe the internal rearrangement of CH2Br-I to CH2I-Br in cyclohexane by extending the time window up to 3 μs. We track the photoproduct kinetics of CH2Br-I in methanol solution where only one isomer is observed. The effect of the polarity of solvent on the geminate recombination pathways is discussed.
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Affiliation(s)
- Moreno Marcellini
- Department of Chemistry-Ångström Laboratory, Uppsala University, P.O. Box 462, SE-751 20 Uppsala, Sweden
| | - Alexandr Nasedkin
- Department of Chemistry-Ångström Laboratory, Uppsala University, P.O. Box 462, SE-751 20 Uppsala, Sweden
| | - Burkhard Zietz
- Department of Chemistry-Ångström Laboratory, Uppsala University, P.O. Box 462, SE-751 20 Uppsala, Sweden
| | - Jonas Petersson
- Department of Chemistry-Ångström Laboratory, Uppsala University, P.O. Box 462, SE-751 20 Uppsala, Sweden
| | - Jonathan Vincent
- Department of Chemistry-Ångström Laboratory, Uppsala University, P.O. Box 462, SE-751 20 Uppsala, Sweden
| | - Federico Palazzetti
- Universitá di Perugia, Dipartimento di Chimica, Biologia e Biotecnologie, 06123 Perugia, Italy
| | - Erik Malmerberg
- Department of Chemistry and Molecular Biology, University of Gothenburg, SE-405 30 Gothenburg, Sweden
| | - Qingyu Kong
- Argonne National Laboratory's, Xray Science Division, 9700 S Cass Ave., Argonne, Illinois 60439, USA
| | - Michael Wulff
- European Synchrotron Radiation Facility, B.P. 220, F-380 43 Grenoble Cedex, France
| | - David van der Spoel
- Department of Cell and Molecular Biology, Uppsala University, Husargatan 3, P.O. Box 596, SE-751 24 Uppsala, Sweden
| | - Richard Neutze
- Department of Chemistry and Molecular Biology, University of Gothenburg, SE-405 30 Gothenburg, Sweden
| | - Jan Davidsson
- Department of Chemistry-Ångström Laboratory, Uppsala University, P.O. Box 462, SE-751 20 Uppsala, Sweden
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Dai X, Song D, Liu K, Su H. Photoinduced C—I bond homolysis of 5-iodouracil: A singlet predissociation pathway. J Chem Phys 2017; 146:025103. [DOI: 10.1063/1.4973650] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Affiliation(s)
- Xiaojuan Dai
- Beijing National Laboratory for Molecular Sciences (BNLMS), Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Di Song
- Beijing National Laboratory for Molecular Sciences (BNLMS), Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
| | - Kunhui Liu
- Beijing National Laboratory for Molecular Sciences (BNLMS), Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
- College of Chemistry, Beijing Normal University, Beijing 100875, China
| | - Hongmei Su
- Beijing National Laboratory for Molecular Sciences (BNLMS), Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
- University of Chinese Academy of Sciences, Beijing 100049, China
- College of Chemistry, Beijing Normal University, Beijing 100875, China
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5
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Kalume A, George L, Cunningham N, Reid SA. Case of the Missing Isomer: Pathways for Molecular Elimination in the Photoinduced Decomposition of 1,1-Dibromoethane. J Phys Chem A 2013; 117:11915-23. [DOI: 10.1021/jp403114s] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Aimable Kalume
- Department of Chemistry, Marquette University, Milwaukee, Wisconsin 53201-1881,
United States
| | - Lisa George
- Department of Chemistry, Marquette University, Milwaukee, Wisconsin 53201-1881,
United States
| | - Nicole Cunningham
- Department of Chemistry, Marquette University, Milwaukee, Wisconsin 53201-1881,
United States
| | - Scott A. Reid
- Department of Chemistry, Marquette University, Milwaukee, Wisconsin 53201-1881,
United States
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6
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Kalume A, George L, Reid SA. On the electronic spectroscopy of the iso-polyhalomethanes. Chem Phys Lett 2012. [DOI: 10.1016/j.cplett.2012.08.066] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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7
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George L, Kalume A, Esselman BJ, Wagner J, McMahon RJ, Reid SA. Spectroscopic and computational studies of matrix-isolated iso-CHBr3: Structure, properties, and photochemistry of iso-bromoform. J Chem Phys 2011; 135:124503. [PMID: 21974531 DOI: 10.1063/1.3640887] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Lisa George
- Department of Chemistry, Marquette University, Milwaukee, Wisconsin 53233, USA
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El-Khoury PZ, Pal SK, Mereshchenko AS, Tarnovsky AN. The formation and back isomerization of iso-H2C–Br–Br on a 100-ps time scale following 255-nm excitation of CH2Br2 in acetonitrile. Chem Phys Lett 2010. [DOI: 10.1016/j.cplett.2010.04.065] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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9
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El-Khoury PZ, George L, Kalume A, Reid SA, Ault BS, Tarnovsky AN. Characterization of iso-CF2I2 in frequency and ultrafast time domains. J Chem Phys 2010; 132:124501. [DOI: 10.1063/1.3357728] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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George L, Kalume A, El-Khoury PZ, Tarnovsky A, Reid SA. Matrix isolation and computational study of isodifluorodibromomethane (F2CBr–Br): A route to Br2 formation in CF2Br2 photolysis. J Chem Phys 2010; 132:084503. [DOI: 10.1063/1.3319567] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Carrier SL, Preston TJ, Dutta M, Crowther AC, Crim FF. Ultrafast Observation of Isomerization and Complexation in the Photolysis of Bromoform in Solution. J Phys Chem A 2009; 114:1548-55. [DOI: 10.1021/jp908725t] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Stacey L. Carrier
- Department of Chemistry University of Wisconsin—Madison, Madison, Wisconsin 53706
| | - Thomas J. Preston
- Department of Chemistry University of Wisconsin—Madison, Madison, Wisconsin 53706
| | - Maitreya Dutta
- Department of Chemistry University of Wisconsin—Madison, Madison, Wisconsin 53706
| | - Andrew C. Crowther
- Department of Chemistry University of Wisconsin—Madison, Madison, Wisconsin 53706
| | - F. Fleming Crim
- Department of Chemistry University of Wisconsin—Madison, Madison, Wisconsin 53706
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Photochemistry of Iodoform in Methanol: Formation and Fate of theIso-CHI2-I Photoproduct. Chemphyschem 2009; 10:1895-900. [DOI: 10.1002/cphc.200900122] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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13
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Chapter 1 Multireference and Spin–Orbit Calculations on Photodissociations of Hydrocarbon Halides. ADVANCES IN QUANTUM CHEMISTRY 2009. [DOI: 10.1016/s0065-3276(08)00401-2] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
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Liu YJ, De Vico L, Lindh R, Fang WH. Spin-Orbit Ab Initio Investigation of the Ultraviolet Photolysis of Diiodomethane. Chemphyschem 2007; 8:890-8. [PMID: 17352002 DOI: 10.1002/cphc.200600737] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
The UV photodissociation (<5 eV) of diiodomethane (CH(2)I(2)) is investigated by spin-orbit ab initio calculations. The experimentally observed photodissociation channels in the gas and condensed phases are clearly assigned by multi-state second-order multiconfigurational perturbation theory in conjunction with spin-orbit interaction through complete active space-state interaction potential energy curves. The calculated results indicate that the fast dissociations of the first two singlet states of CH(2)I(2) and CH(2)I--I lead to geminate-radical products, CH(2)I (.)+I((2)P(3/2)) or CH(2)I (.)+ I*((2)P(1/2)). The recombination process from CH(2)I--I to CH(2)I(2) is explained by an isomerization process and a secondary photodissociation reaction of CH(2)I--I. Finally, the study reveals that spin-orbits effects are significant in the quantitative analysis of the electronic spectrum of the CH(2)I--I species.
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Affiliation(s)
- Ya-Jun Liu
- College of Chemistry, Beijing Normal University, Beijing 100875, P. R. China.
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Lin X, Zhao C, Phillips DL. Modeling SN2 Reactions in Methanol Solution by ab Initio Calculation of Nucleophile Solvent−Substrate Clusters. J Org Chem 2005; 70:9279-87. [PMID: 16268600 DOI: 10.1021/jo051280+] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
[Structure: see text]. Ab initio calculations were used to study the S(N)2 reactions of the CH3OCH2I molecule with a methoxide ion (CH3O-) and a methanol molecule by systematically building up the reaction system with explicit incorporation of the methanol solvent molecules. For the reaction of CH3OCH2I with a methoxide ion, the explicit incorporation of the methanol molecules to better solvate the methoxide ion led to an increase in the barrier to reaction. For the reaction of CH3OCH2I with a methanol molecule, the explicit incorporation of the methanol molecules led to a decrease in the barrier to reaction because of an inclination of this reaction to proceed with the nucleophilic displacements accompanied by proton transfer through the H-bonding chain. The H-bonding chain served as both acid and base catalysts for the displacement reaction. A ca. 10(15)-fold acceleration of the methanol tetramer incorporated S(N)2 reaction was predicted relative to the corresponding methanol monomer reaction. The properties of the reactions examined are discussed briefly.
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Affiliation(s)
- Xufeng Lin
- Department of Chemistry, University of Hong Kong, Pokfulam Road, Hong Kong, PR China
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