QM/MM Study of the Mononuclear Non-Heme Iron Active Site of Phenylalanine Hydroxylase

Mechanistic Insights into the Dicopper-Complex-Catalyzed Hydroxylation of Methane and Benzene Using Nitric Oxide: A DFT Study

Although hydrocarbons are known to act as reductants for the catalytic reduction of nitric oxides (NO_x) over copper-based catalysts, the reaction mechanism requires clarification. Herein, density functional theory (DFT) calculations were carried out to investigate the reduction mechanisms of NO_x to dinitrogen coupled to the hydroxylation of methane or benzene using the dicopper complex reported by Zhang and co-workers [ J. Am. Chem. Soc. 2019, 141, 10159-10164]. The B3LYP functional was used to optimize the (μ-oxo)(μ-nitrosyl)dicopper complex in the quartet state and the (μ-η²:η²-NO₂)dicopper complex in the doublet state, the latter of which was found to be the ground state. Then, we investigated the reactivities of the (μ-η²:η²-NO₂)dicopper complex toward methane and benzene by considering the conversions of N₂O to N₂ in the presence and the absence of methane or benzene. In the presence of methane and benzene, the calculated activation energies were 27.0 and 21.0 kcal/mol, respectively, whereas that with N₂O alone was prohibitively high (61.9 kcal/mol). Thus, the (μ-η²:η²-NO₂)dicopper complex prefers the reactions with methane and benzene to that with N₂O. The reaction of the (μ-η²:η²-NO₂)dicopper complex with methane or benzene generated the (μ-nitrosyl)dicopper complex. The (μ-nitrosyl)dicopper complex then reacted with N₂O to regenerate the (μ-η²:η²-NO₂)dicopper complex and N₂ with an activation barrier of 31.5 kcal/mol. The overall reactions for methane and benzene hydroxylation were calculated to be exothermic by 41.7 and 54.1 kcal/mol, respectively. These results suggest that the catalytic reduction of NO_x using hydrocarbons is feasible at certain operating temperatures. Thus, our calculations provide new insights into the design of catalysts for NO_x purification.

Propene Activation by the Oxo-Iron Active Species of Taurine/α-Ketoglutarate Dioxygenase (TauD) Enzyme. How Does the Catalysis Compare to Heme-Enzymes?

Density functional calculations on the oxygenation reaction of propene by a model for taurine/alpha-ketoglutarate dioxygenase (TauD) enzyme are presented. The oxo-iron active species of TauD is shown to be a powerful and aggressive oxidant, which is able to hydroxylate C-H bonds and epoxidize C=C bonds with low barriers. In the case of propene oxygenation, the hydroxylation and epoxidation mechanisms are competitive on a dominant quintet spin state surface. We have compared the mechanism and thermodynamics of TauD with oxo-iron heme catalysts, such as the cytochromes P450, and found some critical differences. The TauD model is found to be much more reactive toward oxygenation of substrates than oxo-iron complexes in a heme environment with much lower reaction barriers. We have analyzed this and assigned this to the strength of the O-H bond formed after hydrogen abstraction from a substrate, which is at least 10 kcal mol(-)(1) stronger in five-coordinated oxo-iron nonheme complexes than in six-coordinated oxo-iron heme complexes. Since, the metal in TauD enzymes is five-coordinated, whereas in heme-enzymes it is six-coordinated there are some critical differences in the valence molecular orbitals. Thus, in oxo-iron heme catalysts one of the antibonding pi orbitals is replaced by a low-lying nonbonding delta orbital resulting in a lower overall spin state. Moreover, heme-enzymes have an extra oxidation equivalent located on the heme, which is missing in non-heme oxo-iron catalysts. As a result, the oxo-iron species of TauD reacts via single-state reactivity on a dominant quintet spin state surface, whereas oxo-iron heme catalysts react via two-state reactivity on competing doublet and quartet spin states.