Dynamics of Oligonucleotides Adsorbed on Thermosensitive Core−Shell Latex Particles

New fluorescent pH sensors based on covalently linkable PET rhodamines

A new class of rhodamines for the application as indicator dyes in fluorescent pH sensors is presented. Their pH-sensitivity derives from photoinduced electron transfer between non-protonated amino groups and the excited chromophore which results in effective fluorescence quenching at increasing pH. The new indicator class carries a pentafluorophenyl group at the 9-position of the xanthene core where other rhodamines bear 2-carboxyphenyl substituents instead. The pentafluorophenyl group is used for covalent coupling to sensor matrices by "click" reaction with mercapto groups. Photophysical properties are similar to "classical" rhodamines carrying 2'-carboxy groups. pH sensors have been prepared with two different matrix materials, silica gel and poly(2-hydroxyethylmethacrylate). Both sensors show high luminescence brightness (absolute fluorescence quantum yield Φ(F)≈0.6) and high pH-sensitivity at pH 5-7 which makes them suitable for monitoring biotechnological samples. To underline practical applicability, a dually lifetime referenced sensor containing Cr(III)-doped Al(2)O(3) as reference material is presented.

Fluorescence of oligonucleotides adsorbed onto the thermoresponsive poly(isopropyl acrylamide) shell of polymer nanoparticles: Application to bioassays

The fluorescence of a rhodamine X dye covalently linked to the 5' terminus of a 25-mers thymine oligodeoxynucleotide (dT25-ROX), adsorbed on the shell of thermoresponsive core-shell polymer particles, was used to probe the polarity, mobility, and distribution of the oligodeoxynucleotides (ODNs) in the shell. The particles have a glassy core of poly(methyl methacrylate) (PMMA) with a 67-nm radius, and a thermoresponsive shell of poly(N-isopropyl acrylamide) (PNIPAM) whose thickness changes from 42 nm at 11 ºC to 5 nm at 45 ºC. The variation in polarity of the shell with temperature was obtained both from the lifetimes and from the solvatochromic shifts of the dye and shows a sharp transition at the volume phase transition temperature (TVPT) of the PNIPAM shell. Förster resonance energy transfer (FRET) between dT25-ROX and a malachite green (MG)-labeled ODN (dT25-MG) was used to obtain the distribution of the ODNs in the thermoresponsive shell. Our results show that at 23 ºC (belowTVPT) the ODNs are distributed inside the shell, sensing an environment similar to water. At this temperature, the PNIPAM shell is composed of hydrated chains with high mobility, as probed by the fluorescence anisotropy of dT25-ROX. By increasing the temperature aboveTVPT, the shell collapses and the chain mobility drastically slows down owing to the anchoring of the ODN to the dense shell of PNIPAM. Furthermore, FRET shows that the ODNs are absorbed on the 5-nm-thick collapsed shell but extend into the water. The polarity probed by the ROX averages the dyes distributed in the interior of the particle shell and in water, with 60 % of the dyes outside the particle shell (i.e., sensing pure water). Another indication that above theTVPTmost of the ODNs are oriented with the dye toward the water phase is that the mobility of the dye covalently bound to the ODNs is identical in water and in the collapsed particle shell. The hybridization efficiency between an ODN supported in the particle shell (by adsorbing the ODN belowTVPTand subsequently increasing the temperature aboveTVPT) and the complementary ODN in solution is identical to that of hybridization in water. This result opens good perspectives toward the use of the core-shell thermoresponsive nanoparticles as supports in DNA bioassays.

Rotational diffusion of an ionic solute in polymorphic environments of a block copolymer: influence of interfacial friction on solute rotation

In an attempt to understand the role of interfacial friction on solute rotation, fluorescence anisotropy decays of a cationic solute, rhodamine 110, have been measured in polymorphic environments of a triblock copolymer, (PEO)20-(PPO)70-(PEO)20 (P123) (PEO = poly(ethylene oxide), PPO = poly(propylene oxide)). It has been noticed that even though rhodamine 110 is located in the interfacial region of the micelles, sol-gel transition does not significantly influence its rotation. Micelle-micelle entanglement, which is responsible for gelation, persists even in the micellar solution phase, perhaps to a lesser degree, and this entanglement is responsible for the observed behavior. This hypothesis has been substantiated by undertaking concentration-dependent studies in which it is shown that the reorientation time of the solute increases with an increase in the micellar concentration. In the case of reverse micelles, it has been observed that an enhancement in the water content facilitates solute rotation, which has been rationalized on the basis of solute migration from the hydrated poly(ethylene oxide) region to the poly(ethylene oxide)-water interface within the core.

First observation of two-stage collapsing kinetics of a single synthetic polymer chain

Using a narrowly distributed poly(N-isoporpylacrylamide) (PNIPAM) chain with a degree of polymerization (N) of 3100, randomly labeled with pyrene, we have, for the first time, observed the two-stage kinetics of the coil-to-globule transition. Two characteristic relaxation times, tau(fast) for the crumpling of a random coil (approximately 12 ms) and tau(slow) for the collapsing of the crumpled chain to a compact globule (approximately 270 ms), were measured. To our knowledge, this is the first experimental evidence supporting the two-stage collapsing kinetics of single synthetic polymer chain previously proposed by de Gennes, Dawson, and Grosberg.

Effect of “inverse melting transition” of aqueous triblock copolymer solutions on solute rotational dynamics

Rotational dynamics of two structurally similar hydrophobic solutes, 2,5-dimethyl-1,4-dioxo-3,6-diphenylpyrrolo[3,4-c]pyrrole (DMDPP) and 1,4-dioxo-3,6-diphenylpyrrolo[3,4-c]pyrrole (DPP), has been investigated in 30% wv aqueous solution of triblock copolymer, poly(ethylene oxide)(20)-poly(propylene oxide)(70)-poly(ethylene oxide)(20) as a function of temperature. This study has been undertaken in an attempt to explore how the dynamics of a solute molecule solubilized in a copolymer solution is influenced when it undergoes sol-to-gel transition. It has been observed that the anisotropy decays of both DMDPP and DPP can be described by biexponential functions in the sol as well as in the gel phase. This observation has been rationalized on the basis of the probe molecule undergoing two different kinds of motion rather than being located in two different regions of the micelle. Even in the gel phase, which results as a consequence of micelle-micelle entanglement due to an increase in their volume fraction, the rotational relaxation of the solutes is similar to that observed in the micellar solution. The outcome of this work indicates that even though these gels have very high macroscopic viscosities and hence do not flow, the microenvironments experienced by the solutes are akin to that of a micellar solution.

Study of the Isotropic and Anisotropic Fluorescence of Two Oligothiophenes by Femtosecond Time-Resolved Spectroscopy

The excited-state dynamics of two oligothiophenes, 5,5'-dicarboxyhaldehyde 2,2',5',2' '-terthiophene and 5-carboxyhaldehyde 2,2',5',2' '-terthiophene, were studied by time-resolved fluorescence spectroscopy, in the femtosecond regime. The isotropic and anisotropic parameters of their fluorescence were calculated. The angle (alpha) between the absorption and emission molecular dipoles was estimated from the initial fluorescence anisotropy. The effect of the chemical substituents, at the ends of the main chain of the molecule, on the temporal behavior of the fluorescence was investigated. Particularly, the nonsymmetric oligothiophene molecule (containing one aldehyde group) exhibits shorter excited-state isotropic decay time than the symmetric one (containing two aldehyde groups). This is due to the higher value of the emission dipole moment of the nonsymmetric oligothiophene in comparison with that of the symmetric one. Additionally, the two materials have almost the same anisotropic fluorescence parameters, and this is attributed to the same rotational motions in the excited state due to their similar molecular structures.

How Critical Micelle Temperature Influences Rotational Diffusion of Hydrophobic Probes Solubilized in Aqueous Triblock Copolymer Solutions

Rotational diffusion of two structurally similar hydrophobic probes, 2,5-dimethyl-1,4-dioxo-3,6-diphenylpyrrolo[3,4-c]pyrrole (DMDPP) and 1,4-dioxo-3,6-diphenylpyrrolo[3,4-c]pyrrole (DPP), has been examined in aqueous solutions of poly(ethylene oxide)20-poly(propylene oxide)70-poly(ethylene oxide)20 triblock copolymer as a function of temperature. These studies have been carried out to explore the influence of critical micelle temperature (cmt) on probe dynamics. It has been observed that, below cmt, the anisotropy decays can be adequately described by single-exponential functions with one time constant each for DMDPP and DPP. However, above cmt, biexponential functions with two time constants are needed to satisfactorily fit the anisotropy decays. Another important observation is that both the probes rotate more rapidly below the critical micelle temperature. The dynamics of the probe molecules are akin to that in a homogeneous solution below cmt, whereas above cmt, the rotational diffusion of the probes has been accounted by the two-step model, which is usually employed to explain the results in micelles. A comparison between the microviscosities of these micelles with other nonionic micelles such as Triton X-100 and Brij-35 reveals that the internal environment of the micelles formed with the triblock copolymer is less fluid.