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Mackay AS, Maxwell JWC, Bedding MJ, Kulkarni SS, Byrne SA, Kambanis L, Popescu MV, Paton RS, Malins LR, Ashhurst AS, Corcilius L, Payne RJ. Electrochemical Modification of Polypeptides at Selenocysteine. Angew Chem Int Ed Engl 2023; 62:e202313037. [PMID: 37818778 DOI: 10.1002/anie.202313037] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2023] [Revised: 10/06/2023] [Accepted: 10/10/2023] [Indexed: 10/13/2023]
Abstract
Mild strategies for the selective modification of peptides and proteins are in demand for applications in therapeutic peptide and protein discovery, and in the study of fundamental biomolecular processes. Herein, we describe the development of an electrochemical selenoetherification (e-SE) platform for the efficient site-selective functionalization of polypeptides. This methodology utilizes the unique reactivity of the 21st amino acid, selenocysteine, to effect formation of valuable bioconjugates through stable selenoether linkages under mild electrochemical conditions. The power of e-SE is highlighted through late-stage C-terminal modification of the FDA-approved cancer drug leuprolide and assembly of a library of anti-HER2 affibody conjugates bearing complex cargoes. Following assembly by e-SE, the utility of functionalized affibodies for in vitro imaging and targeting of HER2 positive breast and lung cancer cell lines is also demonstrated.
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Affiliation(s)
- Angus S Mackay
- School of Chemistry, The University of Sydney, Sydney, NSW 2006, Australia
- Australian Research Council Centre of Excellence for Innovations in Peptide and Protein Science, The University of Sydney, Sydney, NSW 2006, Australia
| | - Joshua W C Maxwell
- School of Chemistry, The University of Sydney, Sydney, NSW 2006, Australia
- Australian Research Council Centre of Excellence for Innovations in Peptide and Protein Science, The University of Sydney, Sydney, NSW 2006, Australia
| | - Max J Bedding
- School of Chemistry, The University of Sydney, Sydney, NSW 2006, Australia
- Australian Research Council Centre of Excellence for Innovations in Peptide and Protein Science, The University of Sydney, Sydney, NSW 2006, Australia
| | - Sameer S Kulkarni
- School of Chemistry, The University of Sydney, Sydney, NSW 2006, Australia
- Australian Research Council Centre of Excellence for Innovations in Peptide and Protein Science, The University of Sydney, Sydney, NSW 2006, Australia
| | - Stephen A Byrne
- School of Chemistry, The University of Sydney, Sydney, NSW 2006, Australia
- Australian Research Council Centre of Excellence for Innovations in Peptide and Protein Science, The University of Sydney, Sydney, NSW 2006, Australia
| | - Lucas Kambanis
- School of Chemistry, The University of Sydney, Sydney, NSW 2006, Australia
- Australian Research Council Centre of Excellence for Innovations in Peptide and Protein Science, The University of Sydney, Sydney, NSW 2006, Australia
| | - Mihai V Popescu
- Department of Chemistry, Colorado State University, Fort Collins, CO 80523, USA
| | - Robert S Paton
- Department of Chemistry, Colorado State University, Fort Collins, CO 80523, USA
| | - Lara R Malins
- Research School of Chemistry, Australian National University, Canberra, ACT 2601, Australia
- Australian Research Council Centre of Excellence for Innovations in Peptide and Protein Science, Australian National University, Canberra, ACT 2601, Australia
| | - Anneliese S Ashhurst
- School of Chemistry, The University of Sydney, Sydney, NSW 2006, Australia
- School of Medical Sciences, Faculty of Medicine and Health, The University of Sydney, Sydney, NSW 2006, Australia
| | - Leo Corcilius
- School of Chemistry, The University of Sydney, Sydney, NSW 2006, Australia
- Australian Research Council Centre of Excellence for Innovations in Peptide and Protein Science, The University of Sydney, Sydney, NSW 2006, Australia
| | - Richard J Payne
- School of Chemistry, The University of Sydney, Sydney, NSW 2006, Australia
- Australian Research Council Centre of Excellence for Innovations in Peptide and Protein Science, The University of Sydney, Sydney, NSW 2006, Australia
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2
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Dowman LJ, Kulkarni SS, Alegre-Requena JV, Giltrap AM, Norman AR, Sharma A, Gallegos LC, Mackay AS, Welegedara AP, Watson EE, van Raad D, Niederacher G, Huhmann S, Proschogo N, Patel K, Larance M, Becker CFW, Mackay JP, Lakhwani G, Huber T, Paton RS, Payne RJ. Site-selective photocatalytic functionalization of peptides and proteins at selenocysteine. Nat Commun 2022; 13:6885. [PMID: 36371402 PMCID: PMC9653470 DOI: 10.1038/s41467-022-34530-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2022] [Accepted: 10/27/2022] [Indexed: 11/15/2022] Open
Abstract
The importance of modified peptides and proteins for applications in drug discovery, and for illuminating biological processes at the molecular level, is fueling a demand for efficient methods that facilitate the precise modification of these biomolecules. Herein, we describe the development of a photocatalytic method for the rapid and efficient dimerization and site-specific functionalization of peptide and protein diselenides. This methodology, dubbed the photocatalytic diselenide contraction, involves irradiation at 450 nm in the presence of an iridium photocatalyst and a phosphine and results in rapid and clean conversion of diselenides to reductively stable selenoethers. A mechanism for this photocatalytic transformation is proposed, which is supported by photoluminescence spectroscopy and density functional theory calculations. The utility of the photocatalytic diselenide contraction transformation is highlighted through the dimerization of selenopeptides, and by the generation of two families of protein conjugates via the site-selective modification of calmodulin containing the 21st amino acid selenocysteine, and the C-terminal modification of a ubiquitin diselenide.
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Affiliation(s)
- Luke J. Dowman
- grid.1013.30000 0004 1936 834XSchool of Chemistry, The University of Sydney, Sydney, NSW 2006 Australia ,grid.1013.30000 0004 1936 834XAustralian Research Council Centre of Excellence for Innovations in Peptide and Protein Science, The University of Sydney, Sydney, NSW 2006 Australia
| | - Sameer S. Kulkarni
- grid.1013.30000 0004 1936 834XSchool of Chemistry, The University of Sydney, Sydney, NSW 2006 Australia ,grid.1013.30000 0004 1936 834XAustralian Research Council Centre of Excellence for Innovations in Peptide and Protein Science, The University of Sydney, Sydney, NSW 2006 Australia
| | - Juan V. Alegre-Requena
- grid.47894.360000 0004 1936 8083Department of Chemistry, Colorado State University, Fort Collins, CO 80523-1872 USA
| | - Andrew M. Giltrap
- grid.1013.30000 0004 1936 834XSchool of Chemistry, The University of Sydney, Sydney, NSW 2006 Australia ,grid.1013.30000 0004 1936 834XAustralian Research Council Centre of Excellence for Innovations in Peptide and Protein Science, The University of Sydney, Sydney, NSW 2006 Australia
| | - Alexander R. Norman
- grid.1013.30000 0004 1936 834XSchool of Chemistry, The University of Sydney, Sydney, NSW 2006 Australia ,grid.1013.30000 0004 1936 834XAustralian Research Council Centre of Excellence for Innovations in Peptide and Protein Science, The University of Sydney, Sydney, NSW 2006 Australia
| | - Ashish Sharma
- grid.1013.30000 0004 1936 834XSchool of Chemistry, The University of Sydney, Sydney, NSW 2006 Australia ,grid.1013.30000 0004 1936 834XAustralian Research Council Centre of Excellence in Exciton Science, The University of Sydney, Sydney, NSW 2006 Australia
| | - Liliana C. Gallegos
- grid.47894.360000 0004 1936 8083Department of Chemistry, Colorado State University, Fort Collins, CO 80523-1872 USA
| | - Angus S. Mackay
- grid.1013.30000 0004 1936 834XSchool of Chemistry, The University of Sydney, Sydney, NSW 2006 Australia ,grid.1013.30000 0004 1936 834XAustralian Research Council Centre of Excellence for Innovations in Peptide and Protein Science, The University of Sydney, Sydney, NSW 2006 Australia
| | - Adarshi P. Welegedara
- grid.1001.00000 0001 2180 7477Research School of Chemistry, Australian National University, Canberra, ACT 2601 Australia
| | - Emma E. Watson
- grid.1013.30000 0004 1936 834XSchool of Chemistry, The University of Sydney, Sydney, NSW 2006 Australia ,grid.1013.30000 0004 1936 834XAustralian Research Council Centre of Excellence for Innovations in Peptide and Protein Science, The University of Sydney, Sydney, NSW 2006 Australia
| | - Damian van Raad
- grid.1001.00000 0001 2180 7477Research School of Chemistry, Australian National University, Canberra, ACT 2601 Australia
| | - Gerhard Niederacher
- grid.10420.370000 0001 2286 1424Institute of Biological Chemistry, Faculty of Chemistry, University of Vienna, Vienna, Austria
| | - Susanne Huhmann
- grid.10420.370000 0001 2286 1424Institute of Biological Chemistry, Faculty of Chemistry, University of Vienna, Vienna, Austria
| | - Nicholas Proschogo
- grid.1013.30000 0004 1936 834XSchool of Chemistry, The University of Sydney, Sydney, NSW 2006 Australia
| | - Karishma Patel
- grid.1013.30000 0004 1936 834XSchool of Life and Environmental Sciences, The University of Sydney, Sydney, NSW 2006 Australia
| | - Mark Larance
- grid.1013.30000 0004 1936 834XCharles Perkins Centre and School of Medical Sciences, The University of Sydney, Sydney, NSW 2006 Australia
| | - Christian F. W. Becker
- grid.10420.370000 0001 2286 1424Institute of Biological Chemistry, Faculty of Chemistry, University of Vienna, Vienna, Austria
| | - Joel P. Mackay
- grid.1013.30000 0004 1936 834XSchool of Life and Environmental Sciences, The University of Sydney, Sydney, NSW 2006 Australia
| | - Girish Lakhwani
- grid.1013.30000 0004 1936 834XSchool of Chemistry, The University of Sydney, Sydney, NSW 2006 Australia ,grid.1013.30000 0004 1936 834XAustralian Research Council Centre of Excellence in Exciton Science, The University of Sydney, Sydney, NSW 2006 Australia
| | - Thomas Huber
- grid.1001.00000 0001 2180 7477Research School of Chemistry, Australian National University, Canberra, ACT 2601 Australia
| | - Robert S. Paton
- grid.47894.360000 0004 1936 8083Department of Chemistry, Colorado State University, Fort Collins, CO 80523-1872 USA
| | - Richard J. Payne
- grid.1013.30000 0004 1936 834XSchool of Chemistry, The University of Sydney, Sydney, NSW 2006 Australia ,grid.1013.30000 0004 1936 834XAustralian Research Council Centre of Excellence for Innovations in Peptide and Protein Science, The University of Sydney, Sydney, NSW 2006 Australia
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3
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Hernández-Ayala LF, Reina M, Flores-Alamo M, Ruiz-Azuara L. Pyridyl based mono and di-selenoethers: Synthesis, characterization and DFT study. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2019.127449] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Agouridas V, El Mahdi O, Diemer V, Cargoët M, Monbaliu JCM, Melnyk O. Native Chemical Ligation and Extended Methods: Mechanisms, Catalysis, Scope, and Limitations. Chem Rev 2019; 119:7328-7443. [DOI: 10.1021/acs.chemrev.8b00712] [Citation(s) in RCA: 243] [Impact Index Per Article: 48.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Vangelis Agouridas
- UMR CNRS 8204, Centre d’Immunité et d’Infection de Lille, University of Lille, CNRS, Institut Pasteur de Lille, F-59000 Lille, France
| | - Ouafâa El Mahdi
- Faculté Polydisciplinaire de Taza, University Sidi Mohamed Ben Abdellah, BP 1223 Taza Gare, Morocco
| | - Vincent Diemer
- UMR CNRS 8204, Centre d’Immunité et d’Infection de Lille, University of Lille, CNRS, Institut Pasteur de Lille, F-59000 Lille, France
| | - Marine Cargoët
- UMR CNRS 8204, Centre d’Immunité et d’Infection de Lille, University of Lille, CNRS, Institut Pasteur de Lille, F-59000 Lille, France
| | - Jean-Christophe M. Monbaliu
- Center for Integrated Technology and Organic Synthesis, Department of Chemistry, University of Liège, Building B6a, Room 3/16a, Sart-Tilman, B-4000 Liège, Belgium
| | - Oleg Melnyk
- UMR CNRS 8204, Centre d’Immunité et d’Infection de Lille, University of Lille, CNRS, Institut Pasteur de Lille, F-59000 Lille, France
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5
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Kheirabadi R, Izadyar M. Computational Modeling of the Catalytic Cycle of Glutathione Peroxidase Nanomimic. J Phys Chem A 2016; 120:10108-10115. [PMID: 27983850 DOI: 10.1021/acs.jpca.6b11437] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Abstract
To elucidate the role of a derivative of ebselen as a mimic of the antioxidant selenoenzyme glutathione peroxidase, density functional theory and solvent-assisted proton exchange (SAPE) were applied to model the reaction mechanism in a catalytic cycle. This mimic plays the role of glutathione peroxidase through a four-step catalytic cycle. The first step is described as the oxidation of 1 in the presence of hydrogen peroxide, while selenoxide is reduced by methanthiol at the second step. In the third step of the reaction, the reduction of selenenylsulfide occurs by methanthiol, and the selenenic acid is dehydrated at the final step. Based on the kinetic parameters, step 4 is the rate-determining step (RDS) of the reaction. The bond strength of the atoms involved in the RDS is discussed with the quantum theory of atoms in molecules (QTAIM). Low value of electron density, ρ(r), and positive Laplacian values are the evidence for the covalent nature of the hydrogen bonds rupture (O30-H31, O33-H34). A change in the sign of the Laplacian, L(r), from the positive value in the reactant to a negative character at the transition state indicates the depletion of the charge density, confirming the N5-H10 and O11-Se1 bond breaking. The analysis of electron location function (ELF) and localized orbital locator (LOL) of the Se1-N5 and Se1-O11 bonds have been done by multi-WFN program. High values of ELF and LOL at the transition state regions between the Se, N, and O atoms display the bond formation. Finally, the main donor-acceptor interaction energies were analyzed using the natural bond orbital analysis for investigation of their stabilization effects on the critical bonds at the RDS.
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Affiliation(s)
- Ramesh Kheirabadi
- Department of Chemistry, Faculty of Sciences, Ferdowsi University of Mashhad, International Campus , Mashhad, Iran
| | - Mohammad Izadyar
- Computational Chemistry Center, Department of Chemistry, Faculty of Sciences, Ferdowsi University of Mashhad , Mashhad, Iran
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6
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Thapa B, Schlegel HB. Theoretical Calculation of pKa’s of Selenols in Aqueous Solution Using an Implicit Solvation Model and Explicit Water Molecules. J Phys Chem A 2016; 120:8916-8922. [DOI: 10.1021/acs.jpca.6b09520] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Bishnu Thapa
- Department of Chemistry, Wayne State University, Detroit, Michigan 48202, United States
| | - H. Bernhard Schlegel
- Department of Chemistry, Wayne State University, Detroit, Michigan 48202, United States
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7
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Zaccaria F, Wolters LP, Fonseca Guerra C, Orian L. Insights on selenium and tellurium diaryldichalcogenides: A benchmark DFT study. J Comput Chem 2016; 37:1672-80. [DOI: 10.1002/jcc.24383] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2016] [Revised: 03/17/2016] [Accepted: 03/17/2016] [Indexed: 02/03/2023]
Affiliation(s)
- Francesco Zaccaria
- Department of Theoretical Chemistry and Amsterdam Center for Multiscale Modeling; Vrije Universiteit Amsterdam; De Boelelaan 1083 Amsterdam 1081 HV the Netherlands
| | - Lando P. Wolters
- Dipartimento Di Scienze Chimiche; Università Studi Di Padova; via Marzolo 1 Padova 35129 Italy
| | - Célia Fonseca Guerra
- Department of Theoretical Chemistry and Amsterdam Center for Multiscale Modeling; Vrije Universiteit Amsterdam; De Boelelaan 1083 Amsterdam 1081 HV the Netherlands
| | - Laura Orian
- Dipartimento Di Scienze Chimiche; Università Studi Di Padova; via Marzolo 1 Padova 35129 Italy
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8
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Rizvi MA, Zaki M, Afzal M, Mane M, Kumar M, Shah BA, Srivastav S, Srikrishna S, Peerzada GM, Tabassum S. Nuclear blebbing of biologically active organoselenium compound towards human cervical cancer cell (HeLa): In vitro DNA/HSA binding, cleavage and cell imaging studies. Eur J Med Chem 2015; 90:876-88. [PMID: 25535953 DOI: 10.1016/j.ejmech.2014.12.014] [Citation(s) in RCA: 52] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2014] [Revised: 12/06/2014] [Accepted: 12/09/2014] [Indexed: 11/26/2022]
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9
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Bushnell EAC, Burns TD, Boyd RJ. The one-electron reduction of dithiolate and diselenolate ligands. Phys Chem Chem Phys 2014; 16:10897-902. [PMID: 24763493 DOI: 10.1039/c4cp01105h] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Herein we present an assessment to determine which of nine well-established DFT functionals best describes the reduction of C2H2Se2(-)˙. In addition, we have also studied the effects of changing the substituents bound to the alkene functional group of dithiolene and diselenolene ligands. Such ligands are important due to their unique electrochemical and physical properties when ligated to metals. The M06-L functional shows best agreement with the QCISD/cc-pVTZ value of -2.45 V for the reduction potential of the (C2H2Se2˙(-)/C2H2Se2(-2)) redox couple. At the M06-L/6-311+G(d,p) level of theory the calculated reduction potential for the (C2H2Se2˙(-)/C2H2Se2(-2)) redox couple is only 0.09 V in error. However, as a result of the nature of the oxidized species for the respective ligands the absolute reduction potential of the (C2H2Se2˙(-)/C2H2Se2(-2)) redox couple is 0.57 V more oxidizing than the (C2H2S2˙(-)/C2H2S2(-2)) redox couple. This is due to the radical electron in C2H2S2˙(-) being delocalized within the alkene backbone, whereas in C2H2Se2˙(-) the electron is largely localized on the Se atoms. The relative reducing power of the S- and Se-containing redox couples is shown to vary depending on the choice of substituents. In particular the reduction potential of the various S-containing redox couples range from being 0.34 V more reducing to 0.28 V more oxidizing than the analogous Se-containing redox couples. This difference in the relative reducing power appears to be a result of the nature of the oxidized ligand. Thus, depending on the choice of moiety very different chemistry is seen between the analogous dithiolate and diselenolate ligands.
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Affiliation(s)
- Eric A C Bushnell
- Department of Chemistry, Dalhousie University, Halifax, Nova Scotia, Canada B3H 4R2.
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10
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McNeil NMR, Matz MC, Back TG. Fluxional Cyclic Seleninate Ester: NMR and Computational Studies, Glutathione Peroxidase-like Behavior, and Unexpected Rearrangement. J Org Chem 2013; 78:10369-82. [DOI: 10.1021/jo401757m] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Affiliation(s)
- Nicole M. R. McNeil
- Department of Chemistry, University of Calgary, Calgary, Alberta, Canada T2N 1N4
| | - Marie C. Matz
- Department of Chemistry, University of Calgary, Calgary, Alberta, Canada T2N 1N4
| | - Thomas G. Back
- Department of Chemistry, University of Calgary, Calgary, Alberta, Canada T2N 1N4
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11
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The Se–H bond of benzeneselenols (ArSe-H): Relationship between bond dissociation enthalpy and spin density of radicals. Chem Phys 2013. [DOI: 10.1016/j.chemphys.2013.02.008] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
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12
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Press DJ, McNeil NMR, Rauk A, Back TG. NMR and Computational Studies of the Configurational Properties of Spirodioxyselenuranes. Are Dynamic Exchange Processes or Temperature-Dependent Chemical Shifts Involved? J Org Chem 2012; 77:9268-76. [DOI: 10.1021/jo301846a] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- David J. Press
- Department
of Chemistry, University of Calgary, Calgary, Alberta, Canada T2N 1N4
| | - Nicole M. R. McNeil
- Department
of Chemistry, University of Calgary, Calgary, Alberta, Canada T2N 1N4
| | - Arvi Rauk
- Department
of Chemistry, University of Calgary, Calgary, Alberta, Canada T2N 1N4
| | - Thomas G. Back
- Department
of Chemistry, University of Calgary, Calgary, Alberta, Canada T2N 1N4
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Heverly-Coulson GS, Boyd RJ. Mechanism of the Reduction of an Oxidized Glutathione Peroxidase Mimic with Thiols. J Chem Theory Comput 2012; 8:5052-7. [DOI: 10.1021/ct300622r] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Affiliation(s)
| | - Russell J. Boyd
- Department of Chemistry, Dalhousie University, Halifax, Nova Scotia, Canada
B3H 4R2
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Collins SP, Heverly-Coulson GS, Boyd RJ. Reaction of group 16 analogues of ethoxyquin with hydrogen peroxide: A computational study. COMPUT THEOR CHEM 2012. [DOI: 10.1016/j.comptc.2011.11.047] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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15
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Heverly-Coulson GS, Boyd RJ. Systematic Study of the Performance of Density Functional Theory Methods for Prediction of Energies and Geometries of Organoselenium Compounds. J Phys Chem A 2011; 115:4827-31. [DOI: 10.1021/jp201455f] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
| | - Russell J. Boyd
- Department of Chemistry, Dalhousie University, Halifax, Nova Scotia, Canada B3H 4J3
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16
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Ali ST, Karamat S, Kóňa J, Fabian WMF. Theoretical Prediction of pKa Values of Seleninic, Selenenic, Sulfinic, and Carboxylic Acids by Quantum-Chemical Methods. J Phys Chem A 2010; 114:12470-8. [DOI: 10.1021/jp102266v] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Affiliation(s)
- S. Tahir Ali
- Institut für Chemie, Karl Franzens Universität Graz, Heinrichstrasse 28, A-8010 Graz, Austria, and Institute of Chemistry, Center for Glycomics, Slovak Academy of Sciences, 845 38 Bratislava, Slovak Republic
| | - Sajjad Karamat
- Institut für Chemie, Karl Franzens Universität Graz, Heinrichstrasse 28, A-8010 Graz, Austria, and Institute of Chemistry, Center for Glycomics, Slovak Academy of Sciences, 845 38 Bratislava, Slovak Republic
| | - Juraj Kóňa
- Institut für Chemie, Karl Franzens Universität Graz, Heinrichstrasse 28, A-8010 Graz, Austria, and Institute of Chemistry, Center for Glycomics, Slovak Academy of Sciences, 845 38 Bratislava, Slovak Republic
| | - Walter M. F. Fabian
- Institut für Chemie, Karl Franzens Universität Graz, Heinrichstrasse 28, A-8010 Graz, Austria, and Institute of Chemistry, Center for Glycomics, Slovak Academy of Sciences, 845 38 Bratislava, Slovak Republic
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17
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Heverly-Coulson GS, Boyd RJ. Theoretical Investigations on the Reaction of Monosubstituted Tertiary-Benzylamine Selenols with Hydrogen Peroxide. J Phys Chem A 2010; 114:10706-11. [DOI: 10.1021/jp105651x] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Affiliation(s)
| | - Russell J. Boyd
- Department of Chemistry, Dalhousie University, Halifax, Nova Scotia, Canada B3H 4J3
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18
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Hurtado M, Mó O, Yáñez M. Homoselenocysteine — An oxygen or selenium acid in the gas phase? CAN J CHEM 2010. [DOI: 10.1139/v10-034] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
The potential energy surface of l-homoselenocysteine (HSEC) has been explored through the use of B3LYP/6-311+G(d,p) calculations. In this survey, seventy-seven different conformers have been located. These local minima can be classified in four groups, A–D. Structures A, B, and D are stabilized by intramolecular hydrogen bonds (IMHBs) with the amino group acting as the hydrogen bond (HB) donor and the carbonyl group (structures A and D) or the hydroxyl group (structure B) as HB acceptors. The structures in set C present an IMHB with the amino group acting as the HB acceptor and the hydroxyl group as the HB donor. The stability order decreases in the following order: A > B > C > D. From their relative stabilities it can be concluded that only three of these conformers, namely A1, A4, and A5, would exist in the gas phase at room temperature. The most stable deprotonated form corresponds to a Se-deprotated species stabilized by a strong IMHB between the hydroxyl group and the Se atom. However, a direct deprotonation of the most stable neutrals lead to O-deprotonated species, which eventually isomerize to yield the global minimum. Hence, we can conclude that, quite unexpectedly, HSEC behaves as a Se acid in the gas phase, its intrinsic acidity being 1374 kJ mol–1at the B3LYP/6-311++G(3df,2p) level of theory. The most stable protonated forms are systematically the N-protonated ones, the global minimum being a structure stabilized through an IMHB involving the protonated amino group as the HB donor and the SeH group as the HB acceptor. The calculated gas-phase proton affinity (PA) at the B3LYP/6-311++G(3df,2p) level of theory is 930 kJ mol–1.
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Affiliation(s)
- Marcela Hurtado
- Departamento de Química, C-9, Universidad Autónoma de Madrid, Campus de Excelencia UAM-CSIC, Cantoblanco, 28049-Madrid, Spain
| | - Otilia Mó
- Departamento de Química, C-9, Universidad Autónoma de Madrid, Campus de Excelencia UAM-CSIC, Cantoblanco, 28049-Madrid, Spain
| | - Manuel Yáñez
- Departamento de Química, C-9, Universidad Autónoma de Madrid, Campus de Excelencia UAM-CSIC, Cantoblanco, 28049-Madrid, Spain
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19
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Heverly-Coulson GS, Boyd RJ. Reduction of Hydrogen Peroxide by Glutathione Peroxidase Mimics: Reaction Mechanism and Energetics. J Phys Chem A 2009; 114:1996-2000. [DOI: 10.1021/jp910368u] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
| | - Russell J. Boyd
- Department of Chemistry, Dalhousie University, Halifax, Nova Scotia, Canada B3H 4J3
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Trujillo C, Mó O, Yáñez M, Silvi B. On the Bonding of Selenocyanates and Isoselenocyanates and Their Protonated Derivatives. J Chem Theory Comput 2008; 4:1593-9. [DOI: 10.1021/ct800178x] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Cristina Trujillo
- Departamento de Química, C-9. Universidad Autónoma de Madrid. Cantoblanco. 28049-Madrid. Spain, and Laboratoire de Chimie Théorique, UMR-CNRS-7616, Université de Paris 06, F-94000 Ivry, France
| | - Otilia Mó
- Departamento de Química, C-9. Universidad Autónoma de Madrid. Cantoblanco. 28049-Madrid. Spain, and Laboratoire de Chimie Théorique, UMR-CNRS-7616, Université de Paris 06, F-94000 Ivry, France
| | - Manuel Yáñez
- Departamento de Química, C-9. Universidad Autónoma de Madrid. Cantoblanco. 28049-Madrid. Spain, and Laboratoire de Chimie Théorique, UMR-CNRS-7616, Université de Paris 06, F-94000 Ivry, France
| | - Bernard Silvi
- Departamento de Química, C-9. Universidad Autónoma de Madrid. Cantoblanco. 28049-Madrid. Spain, and Laboratoire de Chimie Théorique, UMR-CNRS-7616, Université de Paris 06, F-94000 Ivry, France
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21
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Pearson JK, Boyd RJ. Effect of Substituents on the GPx-like Activity of Ebselen: Steric versus Electronic. J Phys Chem A 2008; 112:1013-7. [DOI: 10.1021/jp076404w] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Jason K. Pearson
- Department of Chemistry, Dalhousie University, Halifax, Nova Scotia, Canada B3H 4J3
| | - Russell J. Boyd
- Department of Chemistry, Dalhousie University, Halifax, Nova Scotia, Canada B3H 4J3
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22
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Sureshkumar D, Ganesh V, Chandrasekaran S. Conformationally Locked Bridged Bicyclic Diselenides: Synthesis, Structure, Se···O Interaction, and Theoretical Studies. J Org Chem 2007; 72:5313-9. [PMID: 17567077 DOI: 10.1021/jo070705k] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
A general synthetic methodology has been developed for the synthesis of a conformationally locked, bridged diselena-bicyclo[3.2.1]octane skeleton by regio- and stereospecific tandem nucleophilic ring opening of cis-1,4-aziridino-epoxides with tetraethylammonium tetraselenotungstate [Et4N]2WSe4, 1, in a one-pot synthesis. Some correlations have been made on the physicochemical characteristics of the diselenides with a change in the dihedral angles.
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Affiliation(s)
- Devarajulu Sureshkumar
- Department of Organic Chemistry, Indian Institute of Science, Bangalore-560012, Karnataka, India
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Pearson JK, Boyd RJ. Density Functional Theory Study of the Reaction Mechanism and Energetics of the Reduction of Hydrogen Peroxide by Ebselen, Ebselen Diselenide, and Ebselen Selenol. J Phys Chem A 2007; 111:3152-60. [PMID: 17407273 DOI: 10.1021/jp071499n] [Citation(s) in RCA: 42] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Density functional theory calculations at the B3LYP/6-311++G(3df,3pd)//B3LYP/6-31G(d,p) level have been performed to elucidate the mechanism and reaction energetics for the reduction of hydrogen peroxide by ebselen, ebselen diselenide, ebselen selenol, and their sulfur analogues. The effects of solvation have been included with the CPCM model, and in the case of the selenol anion reaction, diffuse functions were used on heavy atoms for the geometry optimizations and thermochemical calculations. The topology of the electron density in each system was investigated using the quantum theory of atoms in molecules, and a detailed interpretation of the electronic charge and population data as well as the atomic energies is presented. Reaction free energy barriers for the oxidation of ebselen, ebselen diselenide, and ebselen selenol are 36.8, 38.4, and 32.5 kcal/mol, respectively, in good qualitative agreement with experiment. It is demonstrated that the oxidized selenium atom is significantly destabilized in all cases and that the exothermicity of the reactions is attributed to the peroxide oxygen atoms via reduction. The lower barrier to oxidation exhibited by the selenol is largely due to entropic effects in the reactant complex.
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Affiliation(s)
- Jason K Pearson
- Department of Chemistry, Dalhousie University, Halifax, Nova Scotia, Canada B3H 4J3
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Pearson JK, Boyd RJ. Modeling the Reduction of Hydrogen Peroxide by Glutathione Peroxidase Mimics. J Phys Chem A 2006; 110:8979-85. [PMID: 16836462 DOI: 10.1021/jp0615196] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Theoretical calculations have been performed on three model reactions representing the reduction of hydrogen peroxide by ebselen, ebselen selenol, and ebselen diselenide. The reaction surfaces have been investigated at the B3PW91/6-311G(2df,p) level, and single-point energies were calculated using the 6-311++G(3df,3pd) basis set. Solvent effects were included implicitly with the conductor-like polarizable continuum model and in one case with explicit inclusion of three water molecules. Mechanistic information is gained from investigating the critical points using the quantum theory of atoms in molecules. The barriers for the reduction of hydrogen peroxide with the ebselen, ebselen selenol, and ebselen diselenide models are 56.7, 53.4, and 35.3 kcal/mol, respectively, suggesting that ebselen diselenide may be the most active antioxidant in the ebselen GPx redox pathway. Results are also compared to that of the sulfur analogues of the model compounds.
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Affiliation(s)
- Jason K Pearson
- Department of Chemistry, Dalhousie University, Halifax, Nova Scotia B3H 4J3, Canada
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