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Gassoumi B, Chaabene M, Ghalla H, Chaabane RB. Role of hydrogen bonding interactions within of the conformational preferences of calix[n = 4,6,8]arene: DFT and QTAIM analysis. J Mol Model 2019; 26:12. [PMID: 31834480 DOI: 10.1007/s00894-019-4255-5] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2019] [Accepted: 11/12/2019] [Indexed: 12/30/2022]
Abstract
Understanding the interactions of the cage molecules with a variety of invited molecules is getting very important. But, the hydrogen bonds can also play a crucial role in the interaction phenomenon. In this work, natural population analysis (NPA), chemical shifts, and atom in molecules (AIM) analysis have been used to identify the role of hydrogen bonds in the stability of CX[n] molecules. According to our calculation, the 13C NMR spectra are also sensitive to the nature of hydrogen bonds. We note that the DFT calculations have reproduced with a very good agreement, the experimentally observed chemical shifts of CX[4].
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Affiliation(s)
- Bouzid Gassoumi
- Laboratory of Advanced Materials and Interfaces (LIMA), Faculty of Science of Monastir, University of Monastir, Avenue of Environment, 5000, Monastir, Tunisia. .,Institute of Light and Matter, UMR5306, University of Lyon, 69622 Villeurbanne Cedex, Lyon, France.
| | - Marwa Chaabene
- Laboratory of Advanced Materials and Interfaces (LIMA), Faculty of Science of Monastir, University of Monastir, Avenue of Environment, 5000, Monastir, Tunisia
| | - Houcine Ghalla
- Quantum Physics Laboratory, Faculty of Science, University of Monastir, 5079, Monastir, Tunisia
| | - Rafik Ben Chaabane
- Laboratory of Advanced Materials and Interfaces (LIMA), Faculty of Science of Monastir, University of Monastir, Avenue of Environment, 5000, Monastir, Tunisia
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2
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Swamy P CA, Solel E, Reany O, Keinan E. Synthetic Evolution of the Multifarene Cavity from Planar Predecessors. Chemistry 2018; 24:15319-15328. [PMID: 30058729 DOI: 10.1002/chem.201803189] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2018] [Revised: 07/28/2018] [Indexed: 01/08/2023]
Abstract
The stepwise evolution of curved multifarene structures from planar precursors is demonstrated, highlighting three architectural design elements: 1) employment of various aromatic units, 2) changing the hybridization of the linking atoms from sp2 to sp3 , and 3) rigidification of the system by the introduction of five-membered rings. Similar design elements have been employed to transform graphene sheets into curved carbon structures. Specifically, the stepwise synthetic evolution of multifarene[2+2], which has a curved, quite rigid structure, begins with a planar, tetraimine precursor, conversion to pairs of vicinal diamines, and the transformation of these pairs to cyclic thiourea groups. This process was probed by NMR spectroscopy and X-ray crystallography. Since varying the carbonylation conditions resulted in carbamates or thiocarbamates rather than the urea or thiourea isomers, the isomeric interconversion was studied both experimentally and by DFT computations. The carbamate versus urea preference was found to reflect either kinetic or thermodynamic control, respectively.
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Affiliation(s)
- Chinna Ayya Swamy P
- The Schulich faculty of Chemistry, Technion-Israel Institute of Technology, Technion city, 32000, Haifa, Israel
| | - Ephrath Solel
- The Schulich faculty of Chemistry, Technion-Israel Institute of Technology, Technion city, 32000, Haifa, Israel
| | - Ofer Reany
- The Avinoam Adam Department of Natural Sciences, The Open University of Israel, 1 University road, P. O. Box 808, Ra'anana, 4353701, Israel
| | - Ehud Keinan
- The Schulich faculty of Chemistry, Technion-Israel Institute of Technology, Technion city, 32000, Haifa, Israel
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3
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Lande DN, Gejji SP. Exploring Chimeric Calix[4]tetrolarene Molecular Scaffolds: Theoretical Investigations. J Phys Chem A 2018; 122:4189-4197. [DOI: 10.1021/acs.jpca.8b01686] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Affiliation(s)
- Dipali N. Lande
- Department of Chemistry, Savitribai Phule Pune University, Pune 411 007, India
| | - Shridhar P. Gejji
- Department of Chemistry, Savitribai Phule Pune University, Pune 411 007, India
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4
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Thorave RG, Lande DN, Athare SV, Gejji SP, Gonnade RG, Malkhede DD. X-ray structure, spectral characteristics, thermal and redox behavior of quinoline encapsulated in sulfonatocalix[4]arene. J Mol Liq 2017. [DOI: 10.1016/j.molliq.2017.09.061] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
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5
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Kim I, Ko KC, Lee WR, Cho J, Moon JH, Moon D, Sharma A, Lee JY, Kim JS, Kim S. Calix[n]triazoles and Related Conformational Studies. Org Lett 2017; 19:5509-5512. [DOI: 10.1021/acs.orglett.7b02557] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Affiliation(s)
- Illan Kim
- College
of Pharmacy, Seoul National University, 1 Gwanak-ro, Gwanak-gu, Seoul 08826, Korea
| | - Kyoung Chul Ko
- Department
of Chemistry, Sungkyunkwan University, Suwon 16419, Korea
| | - Woo Ram Lee
- Department
of Chemistry, Sejong University, Seoul 05006, Korea
| | - Jihee Cho
- College
of Pharmacy, Seoul National University, 1 Gwanak-ro, Gwanak-gu, Seoul 08826, Korea
| | - Jong Hun Moon
- Department
of Chemistry, Sungkyunkwan University, Suwon 16419, Korea
| | - Dohyun Moon
- Beamline
Division, Pohang Accelerator Laboratory, Pohang 790-784, Korea
| | - Amit Sharma
- Department
of Chemistry, Korea University, Seoul 02841, Korea
| | - Jin Yong Lee
- Department
of Chemistry, Sungkyunkwan University, Suwon 16419, Korea
| | - Jong Seung Kim
- Department
of Chemistry, Korea University, Seoul 02841, Korea
| | - Sanghee Kim
- College
of Pharmacy, Seoul National University, 1 Gwanak-ro, Gwanak-gu, Seoul 08826, Korea
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6
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Lande DN, Gejji SP. Cooperative Hydrogen Bonding, Molecular Electrostatic Potentials, and Spectral Characteristics of Partial Thia-Substituted Calix[4]arene Macrocycles. J Phys Chem A 2016; 120:7385-97. [DOI: 10.1021/acs.jpca.6b07568] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Dipali N. Lande
- Department of Chemistry, Savitribai Phule Pune University, 411 007 Pune, India
| | - Shridhar P. Gejji
- Department of Chemistry, Savitribai Phule Pune University, 411 007 Pune, India
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7
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de Lara LS, Wrobel EC, Lazzarotto M, de Lázaro SR, Camilo A, Wohnrath K. An experimental and theoretical study of the aggregate structure of calix[6]arenes in Langmuir films at the water/air interface. Phys Chem Chem Phys 2016; 18:22906-13. [PMID: 27485988 DOI: 10.1039/c6cp04565k] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
In this paper, the aggregate formation of para-tert-butylcalix[6]arene molecules (Calix6) in dimeric structures was investigated at the water/air interface using experimental and theoretical studies. A specific orientation for such Calix6 molecules was observed with an average area of 133 Å(2), which corresponds to a flat-on orientation with the OH groups parallel to the interface. By varying the pressure on the Calix6 monolayer, the molecules tend to organize at the water/air interface and subsequently, at higher pressures, aggregates were formed atop the monolayer as cluster structures. Morphological characterization by the Brewster Angle Microscopy technique showed the formation of larger domains at lower pressures. Based on such experimental evidence, molecular dynamics (MD) simulations were performed to investigate possible dimeric structures for aggregated Calix6 molecules, which are localized at the water/air interface, where one molecule remains in the water phase and the other remains in the air phase. By increasing surface pressure, experimental and theoretical results corroborate the intermolecular interactions among Calix6 molecules. These results are relevant because a dimeric structure has a molecular cavity, which is a candidate for host-guest chemistry, an ion receptor or a drug-delivery system.
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Affiliation(s)
- Lucas S de Lara
- Department of Physics, Universidade Estadual de Ponta Grossa, Ponta Grossa, Paraná 84030-900, Brazil
| | - Ellen C Wrobel
- Department of Chemistry, Universidade Estadual de Ponta Grossa, Ponta Grossa, Paraná 84030-900, Brazil.
| | - Márcio Lazzarotto
- Department of Organic Chemistry, Universidade Federal do Rio Grande do Sul, Porto Alegre, Rio Grande do Sul 91501-970, Brazil
| | - Sérgio R de Lázaro
- Department of Chemistry, Universidade Estadual de Ponta Grossa, Ponta Grossa, Paraná 84030-900, Brazil.
| | - Alexandre Camilo
- Department of Physics, Universidade Estadual de Ponta Grossa, Ponta Grossa, Paraná 84030-900, Brazil
| | - Karen Wohnrath
- Department of Chemistry, Universidade Estadual de Ponta Grossa, Ponta Grossa, Paraná 84030-900, Brazil.
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8
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Ali SM, Joshi JM, Singha Deb AK, Boda A, Shenoy KT, Ghosh SK. Dual mode of extraction for Cs+ and Na+ ions with dicyclohexano-18-crown-6 and bis(2-propyloxy)calix[4]crown-6 in ionic liquids: density functional theoretical investigation. RSC Adv 2014. [DOI: 10.1039/c4ra02246g] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Experimentally observed distribution constant and theoretically predicted values of ΔGext for Cs+ and Na+ ions with DCH18C6 and BPC6 ligand in ionic liquid and octanol.
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Affiliation(s)
- Sk. M. Ali
- Chemical Engineering Division
- Chemical Engineering Group
- Bhabha Atomic Research Centre
- Mumbai, India
- Homi Bhabha National Institute
| | - J. M. Joshi
- Chemical Engineering Division
- Chemical Engineering Group
- Bhabha Atomic Research Centre
- Mumbai, India
| | - A. K. Singha Deb
- Chemical Engineering Division
- Chemical Engineering Group
- Bhabha Atomic Research Centre
- Mumbai, India
| | - A. Boda
- Chemical Engineering Division
- Chemical Engineering Group
- Bhabha Atomic Research Centre
- Mumbai, India
| | - K. T. Shenoy
- Chemical Engineering Division
- Chemical Engineering Group
- Bhabha Atomic Research Centre
- Mumbai, India
| | - S. K. Ghosh
- Chemical Engineering Division
- Chemical Engineering Group
- Bhabha Atomic Research Centre
- Mumbai, India
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9
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Manzano S, Zambrano CH, Mendez MA, Dueno EE, Cazar RA, Torres FJ. A theoretical study of the conformational preference of alkyl- and aryl-substituted pyrogallol[4]arenes and evidence of the accumulation of negative electrostatic potential within the cavity of theirrcccconformers. MOLECULAR SIMULATION 2013. [DOI: 10.1080/08927022.2013.806806] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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10
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Muthu Mareeswaran P, Prakash M, Subramanian V, Rajagopal S. Recognition of aromatic amino acids and proteins with p
-sulfonatocalix[4]arene - A luminescence and theoretical approach. J PHYS ORG CHEM 2013. [DOI: 10.1002/poc.2996] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
| | - Muthuramalingam Prakash
- Chemical Laboratory; Central Leather Research Institute, Council of Scientific and Industrial Research; Adyar Chennai 600 020 India
| | - Venkatesan Subramanian
- Chemical Laboratory; Central Leather Research Institute, Council of Scientific and Industrial Research; Adyar Chennai 600 020 India
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11
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Boda A, Sheikh MA. Density Functional Theoretical Investigation of Remarkably High Selectivity of the Cs+ Ion over the Na+ Ion toward Macrocyclic Hybrid Calix-Bis-Crown Ether. J Phys Chem A 2012; 116:8615-23. [DOI: 10.1021/jp303817s] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Anil Boda
- Chemical Engineering Division, Bhabha Atomic Research Centre, Mumbai,
India 400085
| | - Musharaf A. Sheikh
- Chemical Engineering Division, Bhabha Atomic Research Centre, Mumbai,
India 400085
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12
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Zhao GZ, Lu M. Density Functional Theory Studies on Intermolecular Interactions of 4-Amino-3,5-dinitropyrazole with NH3and H2O. J CHIN CHEM SOC-TAIP 2012. [DOI: 10.1002/jccs.201100378] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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13
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Lawson MN, Blanda MT, Staggs SJ, Sederholm LN, Easter DC. Computational studies of the cone and 1,2,3 alternate calix[6]arene bis-crown-4 isomers: structures, NMR shifts, atomic charges, and steric compression. J PHYS ORG CHEM 2009. [DOI: 10.1002/poc.1621] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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14
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Boulet B, Joubert L, Cote G, Bouvier-Capely C, Cossonnet C, Adamo C. Theoretical Study of the Uranyl Complexation by Hydroxamic and Carboxylic Acid Groups. Inorg Chem 2008; 47:7983-91. [DOI: 10.1021/ic7018633] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Béatrice Boulet
- IRSN/DRPH/SDI/LRC, BP 17; 92262 Fontenay-aux-Roses Cedex, France, and Laboratoire d’Electrochimie et Chimie Analytique, UMR CNRS-ENSCP 7575 Ecole Nationale Supérieure de Chimie de Paris, 11 rue Pierre et Marie Curie, F-75231 Paris Cedex 05, France
| | - Laurent Joubert
- IRSN/DRPH/SDI/LRC, BP 17; 92262 Fontenay-aux-Roses Cedex, France, and Laboratoire d’Electrochimie et Chimie Analytique, UMR CNRS-ENSCP 7575 Ecole Nationale Supérieure de Chimie de Paris, 11 rue Pierre et Marie Curie, F-75231 Paris Cedex 05, France
| | - Gérard Cote
- IRSN/DRPH/SDI/LRC, BP 17; 92262 Fontenay-aux-Roses Cedex, France, and Laboratoire d’Electrochimie et Chimie Analytique, UMR CNRS-ENSCP 7575 Ecole Nationale Supérieure de Chimie de Paris, 11 rue Pierre et Marie Curie, F-75231 Paris Cedex 05, France
| | - Céline Bouvier-Capely
- IRSN/DRPH/SDI/LRC, BP 17; 92262 Fontenay-aux-Roses Cedex, France, and Laboratoire d’Electrochimie et Chimie Analytique, UMR CNRS-ENSCP 7575 Ecole Nationale Supérieure de Chimie de Paris, 11 rue Pierre et Marie Curie, F-75231 Paris Cedex 05, France
| | - Catherine Cossonnet
- IRSN/DRPH/SDI/LRC, BP 17; 92262 Fontenay-aux-Roses Cedex, France, and Laboratoire d’Electrochimie et Chimie Analytique, UMR CNRS-ENSCP 7575 Ecole Nationale Supérieure de Chimie de Paris, 11 rue Pierre et Marie Curie, F-75231 Paris Cedex 05, France
| | - Carlo Adamo
- IRSN/DRPH/SDI/LRC, BP 17; 92262 Fontenay-aux-Roses Cedex, France, and Laboratoire d’Electrochimie et Chimie Analytique, UMR CNRS-ENSCP 7575 Ecole Nationale Supérieure de Chimie de Paris, 11 rue Pierre et Marie Curie, F-75231 Paris Cedex 05, France
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15
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Liu JM, Zheng QY, Chen CF, Huang ZT. Selectively formylated and bridged calix[6]arene derivatives at the upper rim. Tetrahedron 2007. [DOI: 10.1016/j.tet.2007.07.054] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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