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Tao Y, Wu Y, Zhang L. Advancements of two dimensional correlation spectroscopy in protein researches. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2018; 197:185-193. [PMID: 29409703 DOI: 10.1016/j.saa.2018.01.039] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2017] [Revised: 01/09/2018] [Accepted: 01/13/2018] [Indexed: 05/26/2023]
Abstract
The developments of two-dimensional correlation spectroscopy (2DCOS) applications in protein studies are discussed, especially for the past two decades. The powerful utilities of 2DCOS combined with various analytical techniques in protein studies are summarized. The emphasis is on the vibration spectroscopic techniques including IR, NIR, Raman and optical activity (ROA), as well as vibration circular dichroism (VCD) and fluorescence spectroscopy. In addition, some new developments, such as hetero-spectral 2DCOS, moving-window correlation, and model based correlation, are also reviewed for their utility in the investigation of the secondary structure, denaturation, folding and unfolding changes of protein. Finally, the new possibility and challenges of 2DCOS in protein research are highlighted as well.
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Affiliation(s)
- Yanchun Tao
- State Key Laboratory of Supramolecular Structure and Materials, Institute of Theoretical Chemistry, Jilin University, No. 2699 Qianjin Street, Changchun 130012, China
| | - Yuqing Wu
- State Key Laboratory of Supramolecular Structure and Materials, Institute of Theoretical Chemistry, Jilin University, No. 2699 Qianjin Street, Changchun 130012, China.
| | - Liping Zhang
- Department of Foundation, Jilin Business and Technology College, No. 1666 Kalunhu Street, Changchun 130507, China.
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Wu Y, Zhang L, Jung YM, Ozaki Y. Two-dimensional correlation spectroscopy in protein science, a summary for past 20years. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2018; 189:291-299. [PMID: 28823970 DOI: 10.1016/j.saa.2017.08.014] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/30/2017] [Accepted: 08/04/2017] [Indexed: 05/26/2023]
Abstract
Two-dimensional correlation spectroscopy (2DCOS) has been widely used to Infrared, Raman, Near IR, Optical Activity (ROA), Vibrational Circular Dichroism (VCD) and Fluorescence spectroscopy. In addition, several new developments, such as 2D hetero-correlation analysis, moving-window two-dimensional (MW2D) correlation, model based correlation (βν and kν correlation analyses) have also well incorporated into protein research. They have been used to investigate secondary structure, denaturation, folding and unfolding changes of protein, and have contributed greatly to the field of protein science. This review provides an overview of the applications of 2DCOS in the field of protein science for the past 20 year, especially to memory our old friend, Dr. Boguslawa Czarnik-Matusewicz, for her great contribution in this research field. The powerful utility of 2DCOS combined with various analytical techniques in protein studies is summarized. The noteworthy developments and perspective of 2DCOS in this field are highlighted finally.
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Affiliation(s)
- Yuqing Wu
- State Key Laboratory of Supramolecular Structure and Materials, Institute of Theoretical Chemistry, Jilin University, No. 2699 Qianjin Street, Changchun 130012, China
| | - Liping Zhang
- Department of Foundation, Jilin Business and Technology College, No. 1666 Kalunhu Street, Changchun 130507, China.
| | - Young Mee Jung
- Department of Chemistry, Institute for Molecular Science and Fusion Technology, Kangwon National University, Chuncheon 24341, Republic of Korea
| | - Yukihiro Ozaki
- School of Science and Technology, Kwansei-Gakuin University, 2-1 Gakuen, Sanda, Hyogo 669-1337, Japan
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Solanas C, Herrero S, Dasari A, Plaza GR, Llorca J, Pérez-Rigueiro J, Elices M, Guinea GV. Insights into the production and characterization of electrospun fibers from regenerated silk fibroin. Eur Polym J 2014. [DOI: 10.1016/j.eurpolymj.2014.08.030] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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Yao T, Jiang T, Pan D, Xu ZX, Zhou P. Effect of Al(iii) and curcumin on silk fibroin conformation and aggregation morphology. RSC Adv 2014. [DOI: 10.1039/c4ra04712e] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Al(iii) can accelerate the conformation transition of silk fibroin from random coils into β-sheets, and curcumin can reverse the transition.
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Affiliation(s)
- Ting Yao
- State Key Laboratory of Molecular Engineering of Polymers
- Department of Macromolecular Science
- Fudan University
- Shanghai 200433, China
| | - Teng Jiang
- State Key Laboratory of Molecular Engineering of Polymers
- Department of Macromolecular Science
- Fudan University
- Shanghai 200433, China
| | - Deng Pan
- State Key Laboratory of Molecular Engineering of Polymers
- Department of Macromolecular Science
- Fudan University
- Shanghai 200433, China
| | - Zhi-Xue Xu
- State Key Laboratory of Molecular Engineering of Polymers
- Department of Macromolecular Science
- Fudan University
- Shanghai 200433, China
| | - Ping Zhou
- State Key Laboratory of Molecular Engineering of Polymers
- Department of Macromolecular Science
- Fudan University
- Shanghai 200433, China
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Zhang R, He X, Fu W, Chen T, Sun P, Li B, Ding D. Efficient Identification of Different Types of Carbons in Organic Solids by 2D Solid-State NMR Spectroscopy. J Phys Chem A 2011; 115:11665-70. [DOI: 10.1021/jp2071293] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Rongchun Zhang
- Key Laboratory of Functional Polymer Materials, Ministry of Education, College of Chemistry and ‡School of Physics, Nankai University, Tianjin 300071, People's Republic of China
| | - Xin He
- Key Laboratory of Functional Polymer Materials, Ministry of Education, College of Chemistry and ‡School of Physics, Nankai University, Tianjin 300071, People's Republic of China
| | - Weigui Fu
- Key Laboratory of Functional Polymer Materials, Ministry of Education, College of Chemistry and ‡School of Physics, Nankai University, Tianjin 300071, People's Republic of China
| | - Tiehong Chen
- Key Laboratory of Functional Polymer Materials, Ministry of Education, College of Chemistry and ‡School of Physics, Nankai University, Tianjin 300071, People's Republic of China
| | - Pingchuan Sun
- Key Laboratory of Functional Polymer Materials, Ministry of Education, College of Chemistry and ‡School of Physics, Nankai University, Tianjin 300071, People's Republic of China
| | - Baohui Li
- Key Laboratory of Functional Polymer Materials, Ministry of Education, College of Chemistry and ‡School of Physics, Nankai University, Tianjin 300071, People's Republic of China
| | - Datong Ding
- Key Laboratory of Functional Polymer Materials, Ministry of Education, College of Chemistry and ‡School of Physics, Nankai University, Tianjin 300071, People's Republic of China
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Lefèvre T, Paquet-Mercier F, Rioux-Dubé JF, Pézolet M. Review structure of silk by raman spectromicroscopy: from the spinning glands to the fibers. Biopolymers 2011; 97:322-36. [PMID: 21882171 DOI: 10.1002/bip.21712] [Citation(s) in RCA: 79] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2011] [Accepted: 08/04/2011] [Indexed: 11/06/2022]
Abstract
Raman spectroscopy has long been proved to be a useful tool to study the conformation of protein-based materials such as silk. Thanks to recent developments, linearly polarized Raman spectromicroscopy has appeared very efficient to characterize the molecular structure of native single silk fibers and spinning dopes because it can provide information relative to the protein secondary structure, molecular orientation, and amino acid composition. This review will describe recent advances in the study of the structure of silk by Raman spectromicroscopy. A particular emphasis is put on the spider dragline and silkworm cocoon threads, other fibers spun by orb-weaving spiders, the spinning dope contained in their silk glands and the effect of mechanical deformation. Taken together, the results of the literature show that Raman spectromicroscopy is particularly efficient to investigate all aspects of silk structure and production. The data provided can lead to a better understanding of the structure of the silk dope, transformations occurring during the spinning process, and structure and mechanical properties of native fibers.
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Affiliation(s)
- Thierry Lefèvre
- Département de Chimie - Centre de recherche sur les matériaux avancés (CERMA) - Centre québécois sur les matériaux fonctionnels (CQMF), Université Laval, Pavillon Alexandre-Vachon, QC G1V 0A6, Canada.
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An application of concatenated 2D correlation spectroscopy: Exploration of the reversibility of the temperature-induced hydration variation of poly(N-isopropylmethacrylamide) in aqueous solution. J Mol Struct 2010. [DOI: 10.1016/j.molstruc.2009.11.045] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Dang Q, Lu S, Yu S, Sun P, Yuan Z. Silk Fibroin/Montmorillonite Nanocomposites: Effect of pH on the Conformational Transition and Clay Dispersion. Biomacromolecules 2010; 11:1796-801. [DOI: 10.1021/bm1002398] [Citation(s) in RCA: 58] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Qinqin Dang
- Key Laboratory of Functional Polymer Materials, Ministry of Education, Institute of Polymer Chemistry and College of Chemistry, Nankai University, Tianjin, 300071, People's Republic of China
| | - Shoudong Lu
- Key Laboratory of Functional Polymer Materials, Ministry of Education, Institute of Polymer Chemistry and College of Chemistry, Nankai University, Tianjin, 300071, People's Republic of China
| | - Shen Yu
- Key Laboratory of Functional Polymer Materials, Ministry of Education, Institute of Polymer Chemistry and College of Chemistry, Nankai University, Tianjin, 300071, People's Republic of China
| | - Pingchuan Sun
- Key Laboratory of Functional Polymer Materials, Ministry of Education, Institute of Polymer Chemistry and College of Chemistry, Nankai University, Tianjin, 300071, People's Republic of China
| | - Zhi Yuan
- Key Laboratory of Functional Polymer Materials, Ministry of Education, Institute of Polymer Chemistry and College of Chemistry, Nankai University, Tianjin, 300071, People's Republic of China
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Kharlampieva E, Jung CM, Kozlovskaya V, Tsukruk VV. Secondary structure of silaffin at interfaces and titania formation. ACTA ACUST UNITED AC 2010. [DOI: 10.1039/c0jm00600a] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
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Ruan QX, Zhou P, Hu BW, Ji D. An investigation into the effect of potassium ions on the folding of silk fibroin studied by generalized two-dimensional NMR-NMR correlation and Raman spectroscopy. FEBS J 2007; 275:219-32. [DOI: 10.1111/j.1742-4658.2007.06191.x] [Citation(s) in RCA: 47] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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