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Ismail TM, Patkar D, Sajith PK, Deshmukh MM. Interplay of Hydrogen, Pnicogen, and Chalcogen Bonding in X(H 2O) n=1-5 (X = NO, NO +, and NO -) Complexes: Energetics Insights via a Molecular Tailoring Approach. J Phys Chem A 2023. [PMID: 38029408 DOI: 10.1021/acs.jpca.3c04181] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2023]
Abstract
Nitric oxide (NO) and its redox congeners (NO+ and NO-), designated as X, play vital roles in various atmospheric and biological events. Understanding the interaction between X and water is inevitable to explain the different reactions that occur during these events. The present study is a unified attempt to explore the noncovalent interactions in microhydrated networks of X using the MP2/aug-cc-pVTZ//MP2/6-311++G(d,p) level of theory. The interactions between X and water have been probed by the molecular electrostatic potential (MESP) by exploiting the features of the most positive (Vmax) and most negative potential (Vmin) sites. The individual energy and cooperativity contributions of various types of noncovalent interactions present in X(H2O)n=1-5 complexes are estimated with the help of a molecular tailoring-based approach (MTA-based). The MTA-based analysis reveals that among various possible interactions in NO(H2O)n complexes, the water···water hydrogen bonds (HBs) are the strongest. Neutral NO can form hydrogen and pnicogen bonds (PBs) with water depending on the orientation; however, such HBs and PBs are the weakest. On the other hand, in the NO+(H2O)n complexes, the NO+···water interactions that occur through PBs are the strongest; the next one is the chalcogen bonding (CB), and the water···water HBs are the weakest. In the case of the NO-(H2O)n complexes, the HB interactions via both N and O atoms of NO- and water molecules are the strongest ones. The strength of water···water HB interactions is also seen to increase with the increase in the number of water molecules in NO-(H2O)n. The present study exemplifies the applicability of MTA-based calculations for quantifying various types of individual noncovalent interactions and their interplay in microhydrated networks of NO and its related ions.
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Affiliation(s)
- Thufail M Ismail
- Department of Chemistry, Farook College, Kozhikode, Kerala 673632, India
| | - Deepak Patkar
- Department of Chemistry, Dr. Harisingh Gour Vishwavidyalaya (A Central University), Sagar 470003, India
| | - Pookkottu K Sajith
- Department of Chemistry, Farook College, Kozhikode, Kerala 673632, India
| | - Milind M Deshmukh
- Department of Chemistry, Dr. Harisingh Gour Vishwavidyalaya (A Central University), Sagar 470003, India
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2
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Guardado JL, Urquilla JA, Kidwell NM, Petit AS. Reactive quenching of NO (A 2Σ +) with H 2O leads to HONO: a theoretical analysis of the reactive and nonreactive electronic quenching mechanisms. Phys Chem Chem Phys 2022; 24:26717-26730. [DOI: 10.1039/d2cp04214b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
In this study, we develop a mechanistic understanding of the pathways for nonreactive and reactive electronic quenching of NO (A2Σ+) with H2O. In doing so, we identify a photochemical mechanism for HONO production in the upper atmosphere.
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Affiliation(s)
- José L. Guardado
- Department of Chemistry and Biochemistry, California State University – Fullerton, Fullerton, CA 92834-6866, USA
| | - Justin A. Urquilla
- Department of Chemistry and Biochemistry, California State University – Fullerton, Fullerton, CA 92834-6866, USA
| | - Nathanael M. Kidwell
- Department of Chemistry, The College of William and Mary, Williamsburg, VA 23187-8795, USA
| | - Andrew S. Petit
- Department of Chemistry and Biochemistry, California State University – Fullerton, Fullerton, CA 92834-6866, USA
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3
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Feldman VI, Ryazantsev SV, Kameneva SV. Matrix isolation in laboratory astrochemistry: state-of-the-art, implications and perspective. RUSSIAN CHEMICAL REVIEWS 2021. [DOI: 10.1070/rcr4995] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Brás EM, Fischer TL, Suhm MA. The Hydrates of TEMPO: Water Vibrations Reveal Radical Microsolvation. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202104496] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Elisa M. Brás
- CQC Department of Chemistry University of Coimbra 3004-535 Coimbra Portugal
- Institut für Physikalische Chemie Georg-August-Universität Göttingen Tammannstr. 6 37077 Göttingen Germany
| | - Taija L. Fischer
- Institut für Physikalische Chemie Georg-August-Universität Göttingen Tammannstr. 6 37077 Göttingen Germany
| | - Martin A. Suhm
- Institut für Physikalische Chemie Georg-August-Universität Göttingen Tammannstr. 6 37077 Göttingen Germany
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Brás EM, Fischer TL, Suhm MA. The Hydrates of TEMPO: Water Vibrations Reveal Radical Microsolvation. Angew Chem Int Ed Engl 2021; 60:19013-19017. [PMID: 34165885 PMCID: PMC8456822 DOI: 10.1002/anie.202104496] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2021] [Revised: 06/01/2021] [Indexed: 12/12/2022]
Abstract
An organic radical monohydrate complex is detected in vacuum isolation at low temperature by FTIR supersonic jet spectroscopy for the first time. It is shown to exhibit a rich conformational and vibrational coupling dynamics, which can be drastically reduced by appropriate isotope substitution. Its detection with a new gas recycling infrared spectrometer demonstrates the thermal metastability of the gaseous TEMPO radical even under humid gas conditions. Compared to its almost isoelectronic and isostructural, closed shell ketone analogue, the hydrogen bond of the solvating water is found to be less directional, but stronger and more strongly downshifting the bonded water OH stretch vibration. A second solvent water directs the first one into a metastable hydrogen bond position to solvate the nitrogen center and the first water at the same time.
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Affiliation(s)
- Elisa M. Brás
- CQCDepartment of ChemistryUniversity of Coimbra3004-535CoimbraPortugal
- Institut für Physikalische ChemieGeorg-August-Universität GöttingenTammannstr. 637077GöttingenGermany
| | - Taija L. Fischer
- Institut für Physikalische ChemieGeorg-August-Universität GöttingenTammannstr. 637077GöttingenGermany
| | - Martin A. Suhm
- Institut für Physikalische ChemieGeorg-August-Universität GöttingenTammannstr. 637077GöttingenGermany
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6
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Affiliation(s)
- Jongbaik Ree
- Department of Chemistry EducationChonnam National University Gwangju 61186 South Korea
| | - Yoo Hang Kim
- Department of ChemistryInha University Incheon 22212 South Korea
| | - Hyung Kyu Shin
- Department of ChemistryUniversity of Nevada Reno 89557 USA
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Dong X, Deng G, Xu J, Li H, Zeng X. Decomposition of Sulfonyl Azide Isocyanate and Sulfonyl Diazide: The Oxygen-Shifted Curtius Rearrangement via Sulfonyl Nitrenes. J Phys Chem A 2018; 122:8511-8519. [DOI: 10.1021/acs.jpca.8b06655] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Xuelin Dong
- College of Chemistry, Chemical Engineering and Materials Science, Soochow University, 215123 Suzhou, China
| | - Guohai Deng
- College of Chemistry, Chemical Engineering and Materials Science, Soochow University, 215123 Suzhou, China
| | - Jian Xu
- College of Chemistry, Chemical Engineering and Materials Science, Soochow University, 215123 Suzhou, China
| | - Hongmin Li
- College of Chemistry, Chemical Engineering and Materials Science, Soochow University, 215123 Suzhou, China
| | - Xiaoqing Zeng
- College of Chemistry, Chemical Engineering and Materials Science, Soochow University, 215123 Suzhou, China
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Mardyukov A, Schreiner PR. Atmospherically Relevant Radicals Derived from the Oxidation of Dimethyl Sulfide. Acc Chem Res 2018; 51:475-483. [PMID: 29393624 DOI: 10.1021/acs.accounts.7b00536] [Citation(s) in RCA: 30] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
The large number and amounts of volatile organosulfur compounds emitted to the atmosphere and the enormous variety of their reactions in various oxidation states make experimental measurements of even a small fraction of them a daunting task. Dimethyl sulfide (DMS) is a product of biological processes involving marine phytoplankton, and it is estimated to account for approximately 60% of the total natural sulfur gases released to the atmosphere. Ocean-emitted DMS has been suggested to play a role in atmospheric aerosol formation and thereby cloud formation. The reaction of ·OH with DMS is known to proceed by two independent channels: abstraction and addition. The oxidation of DMS is believed to be initiated by the reaction with ·OH and NO3· radicals, which eventually leads to the formation of sulfuric acid (H2SO4) and methanesulfonic acid (CH3SO3H). The reaction of DMS with NO3· appears to proceed exclusively by hydrogen abstraction. The oxidation of DMS consists of a complex sequence of reactions. Depending on the time of the day or altitude, it may take a variety of pathways. In general, however, the oxidation proceeds via chains of radical reactions. Dimethyl sulfoxide (DMSO) has been reported to be a major product of the addition channel. Dimethyl sulfone (DMSO2), SO2, CH3SO3H, and methanesulfinic acid (CH3S(O)OH) have been observed as products of further oxidation of DMSO. Understanding the details of DMS oxidation requires in-depth knowledge of the elementary steps of this seemingly simple transformation, which in turn requires a combination of experimental and theoretical methods. The methylthiyl (CH3S·), methylsulfinyl (CH3SO·), methylsulfonyl (CH3SO2·), and methylsulfonyloxyl (CH3SO3·) radicals have been postulated as intermediates in the oxidation of DMS. Therefore, studying the chemistry of sulfur-containing free radicals in the laboratory also is the basis for understanding the mechanism of DMS oxidation in the atmosphere. The application of matrix-isolation techniques in combination with quantum-mechanical calculations on the generation and structural elucidation of CH3SOx (x = 0-3) radicals is reviewed in the present Account. Experimental matrix IR and UV/vis data for all known species of this substance class are summarized together with data obtained using other spectroscopic techniques, including time-resolved spectroscopy, electron paramagnetic resonance spectroscopy, and others. We also discuss the reactivity and experimental characterization of these species to illustrate their practical relevance and highlight spectroscopic techniques available for the elucidation of their geometric and electronic structures. The present Account summarizes recent results regarding the preparation, characterization, and reactivity of various radical species with the formula CH3SOx (x = 0-3).
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Affiliation(s)
- Artur Mardyukov
- Institute of Organic Chemistry, Justus-Liebig University, Heinrich-Buff-Ring 17, 35392 Giessen, Germany
| | - Peter R. Schreiner
- Institute of Organic Chemistry, Justus-Liebig University, Heinrich-Buff-Ring 17, 35392 Giessen, Germany
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Orenha RP, San Gregorio LR, Galembeck SE. Computational study of the interaction between NO, NO +, and NO - with H 2O. J Mol Model 2016; 22:276. [PMID: 27783233 DOI: 10.1007/s00894-016-3148-0] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2016] [Accepted: 10/09/2016] [Indexed: 11/25/2022]
Abstract
In this computational study the interaction of NO., NO+, and NO- with H2O: [NO--H2O]., 1 ., [NO--H2O]+, 1 + , and [NO--H2O]-, 1 - was analysed. The optimized geometries indicate that the relative position of NO and H2O depends on the total charge: (ON.--H-OH), (NO---H-OH), and (ON+--OH2). Moreover, atomic spin density along with frontier molecular orbitals help to identify the preferred reduction or oxidation sites on the nitric oxide. Thus, quantum theory of atoms in molecules (QTAIM), electron localization function (ELF), and natural bond-bond polarizability (NBBP) methods aid to quantify the electron delocalization level between NO and H2O, 1 + > 1 . > 1 - , and show the predominantly ionic, and covalent character to inter-molecular, and intra-molecular chemical bonds, respectively. Furthermore, the natural bond orbital (NBO) and localized molecular orbital energy decomposition analysis (LMO-EDA) methods enable energy analyses of the interaction between NO and H2O in the complexes 1 ., 1 + , and 1 - . Where, the first method showed that the interaction between the natural bond orbitals in 1 - is more favorable, than in 1 + , and less in 1 ., however, the second method designates that the total interaction energy is lower for 1 + in relation to 1 - and 1 ., due mainly to the electrostatic component. As a final point, analysis of the electrostatic potential surfaces provides a clear and direct explanation for the relative position of the monomers. It also shows that the predominant Coulombic attraction between H2O and the charged NO+, and NO- compounds will be stronger in relation to the neutral NO.. Graphical abstract ᅟ.
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Affiliation(s)
- Renato P Orenha
- Departamento de Química, FFCLRP, Universidade de São Paulo, 14040-901, Ribeirão Preto, SP, Brazil
| | - Letícia R San Gregorio
- Departamento de Química, FFCLRP, Universidade de São Paulo, 14040-901, Ribeirão Preto, SP, Brazil
| | - Sérgio E Galembeck
- Departamento de Química, FFCLRP, Universidade de São Paulo, 14040-901, Ribeirão Preto, SP, Brazil.
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Cao Q, Berski S, Räsänen M, Latajka Z, Khriachtchev L. Spectroscopic and Computational Characterization of the HCO···H2O Complex. J Phys Chem A 2013; 117:4385-93. [DOI: 10.1021/jp4009477] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Qian Cao
- Department of Chemistry, P.O. Box 55, FIN-00014, University of Helsinki, Finland
| | - Slawomir Berski
- Faculty of Chemistry, University of Wroclaw, 14, F. Joliot-Curie Str., 50-383 Wroclaw, Poland
| | - Markku Räsänen
- Department of Chemistry, P.O. Box 55, FIN-00014, University of Helsinki, Finland
| | - Zdzislaw Latajka
- Faculty of Chemistry, University of Wroclaw, 14, F. Joliot-Curie Str., 50-383 Wroclaw, Poland
| | - Leonid Khriachtchev
- Department of Chemistry, P.O. Box 55, FIN-00014, University of Helsinki, Finland
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12
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Poad BLJ, Johnson CJ, Continetti RE. Photoelectron–photofragment coincidence studies of NO−-X clusters (X = H2O, CD4). Faraday Discuss 2011; 150:481-92; discussion 505-32. [DOI: 10.1039/c0fd00006j] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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13
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Salmi T, Runeberg N, Halonen L, Lane JR, Kjaergaard HG. Computational Vibrational and Electronic Spectroscopy of the Water Nitric Oxide Complex. J Phys Chem A 2010; 114:4835-42. [DOI: 10.1021/jp909441u] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
- Teemu Salmi
- Laboratory of Physical Chemistry, Department of Chemistry, University of Helsinki, P.O. Box 55 (A.I. Virtasen aukio 1), FIN-00014 University of Helsinki, Finland, Department of Chemistry, University of Otago, P.O. Box 56, 9054 Dunedin, New Zealand, Department of Chemistry, University of Waikato, Private Bag 3105, Hamilton 3240, New Zealand, and Department of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen Ø, Denmark
| | - Nino Runeberg
- Laboratory of Physical Chemistry, Department of Chemistry, University of Helsinki, P.O. Box 55 (A.I. Virtasen aukio 1), FIN-00014 University of Helsinki, Finland, Department of Chemistry, University of Otago, P.O. Box 56, 9054 Dunedin, New Zealand, Department of Chemistry, University of Waikato, Private Bag 3105, Hamilton 3240, New Zealand, and Department of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen Ø, Denmark
| | - Lauri Halonen
- Laboratory of Physical Chemistry, Department of Chemistry, University of Helsinki, P.O. Box 55 (A.I. Virtasen aukio 1), FIN-00014 University of Helsinki, Finland, Department of Chemistry, University of Otago, P.O. Box 56, 9054 Dunedin, New Zealand, Department of Chemistry, University of Waikato, Private Bag 3105, Hamilton 3240, New Zealand, and Department of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen Ø, Denmark
| | - Joseph R. Lane
- Laboratory of Physical Chemistry, Department of Chemistry, University of Helsinki, P.O. Box 55 (A.I. Virtasen aukio 1), FIN-00014 University of Helsinki, Finland, Department of Chemistry, University of Otago, P.O. Box 56, 9054 Dunedin, New Zealand, Department of Chemistry, University of Waikato, Private Bag 3105, Hamilton 3240, New Zealand, and Department of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen Ø, Denmark
| | - Henrik G. Kjaergaard
- Laboratory of Physical Chemistry, Department of Chemistry, University of Helsinki, P.O. Box 55 (A.I. Virtasen aukio 1), FIN-00014 University of Helsinki, Finland, Department of Chemistry, University of Otago, P.O. Box 56, 9054 Dunedin, New Zealand, Department of Chemistry, University of Waikato, Private Bag 3105, Hamilton 3240, New Zealand, and Department of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen Ø, Denmark
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Beckers H, Zeng X, Willner H. Intermediates Involved in the Oxidation of Nitrogen Monoxide: Photochemistry of thecis-N2O2⋅O2complex and ofsym-N2O4in Solid Ne Matrices. Chemistry 2010; 16:1506-20. [DOI: 10.1002/chem.200902406] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
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Cybulski H, Żuchowski PS, Fernández B, Sadlej J. The water-nitric oxide intermolecular potential-energy surface revisited. J Chem Phys 2009; 130:104303. [DOI: 10.1063/1.3079541] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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Dozova N, Krim L, Alikhani ME, Lacome N. Vibrational Spectra and Structure of CH3Cl:(H2O)2and CH3Cl:(D2O)2Complexes. IR Matrix Isolation and ab Initio Calculations. J Phys Chem A 2007; 111:10055-61. [PMID: 17867658 DOI: 10.1021/jp074028+] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The infrared spectra of CH3Cl + H2O isolated in solid neon at low temperature have been investigated. High concentration studies of water (0.01%-4%) and subsequent annealing lead to the formation of the ternary CH3Cl:(H2O)2 complex. Detailed vibrational assignments were made on the observed spectra of water and deuterated water engaged in the complex. In parallel, structural, energetic, and vibrational properties of the complex have been studied at the second-order Møller-Plesset perturbation theory using several basis sets. Anaharmonic correction to the vibrational frequencies has been done with the standard second-order perturbation approach. It was shown that the ground state of the complex has a cyclic form for which the nonadditive three-body contribution was found to be around 10% of the interaction energy.
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Affiliation(s)
- Nadia Dozova
- Université Pierre et Marie Curie-Paris 6, CNRS, LADIR UMR 7075, Boîte 49, 4 Place Jussieu, 75252 Paris, Cedex 05, France
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Crespo-Otero R, Suardiaz R, Montero LA, de la Vega JMG. Potential energy surfaces and Jahn-Teller effect on CH4⋯NO complexes. J Chem Phys 2007; 127:104305. [PMID: 17867745 DOI: 10.1063/1.2752805] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
The potential energy surface of the CH(4)...NO van der Waals complexes was explored at the RCCSD(T)/aug-cc-pVTZ level including the full counterpoise correction to the basis set superposition error. The Jahn-Teller distortion of the C(3v) configurations for the CH bonded and CH(3) face complexes was analyzed. From this distortion, two A(') and A(") adiabatic surfaces were considered. The estimated zero point energy of C(s) configurations is above the barrier of the C(3v) ones. Therefore, the CH(3) face complexes are dynamic Jahn-Teller systems. The D(0) (140 cm(-1) for A(") state and 100 cm(-1) for A(')) values obtained are in good agreement with the experimental values (103+/-2 cm(-1)) recently reported.
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Affiliation(s)
- Rachel Crespo-Otero
- Laboratorio de Química Computacional y Teórica, Facultad de Química, Universidad de la Habana, 10400 Havana, Cuba
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