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Chen W, Xie H, Chen Z, Qu Z, Ren H, Li X. Influence of Singlet Oxygen in H + O 2 Collision Reaction. J Phys Chem A 2024. [PMID: 39140992 DOI: 10.1021/acs.jpca.4c03317] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/15/2024]
Abstract
The collision reaction of H + O2 = OH + O is a pivotal step in combustion. To investigate the influence of singlet oxygen on this reaction, we computed potential energy surfaces (PESs) for all six lowest states using high-level ab initio methods and coupled them with embedded atom neural network (EANN) fitting. By integrating quasi-classical trajectory (QCT) with trajectory surface hopping (TSH) based on the fitted PESs, we simulated the dynamics of both ground- and excited-states to derive the reaction rate constants for the forward and reverse processes. The results reveal that the forward reaction facilitates radical generation, promoting combustion reactions. Furthermore, calculations of reverse reaction rate constants indicate that all electronic states ultimately yield ground-state oxygen, leading to radical deactivation and exerting an inhibitory effect on combustion processes.
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Affiliation(s)
- Wenlan Chen
- School of Chemical Engineering, Sichuan University, Chengdu 610065, China
| | - Haohan Xie
- Institute of Theoretical Chemistry, College of Chemistry, Jilin University, Changchun 130023, China
| | - Zhizhou Chen
- Institute of Theoretical Chemistry, College of Chemistry, Jilin University, Changchun 130023, China
| | - Zexing Qu
- Institute of Theoretical Chemistry, College of Chemistry, Jilin University, Changchun 130023, China
| | - Haisheng Ren
- School of Chemical Engineering, Sichuan University, Chengdu 610065, China
- Engineering Research Center of Combustion and Cooling for Aerospace Power, Ministry of Education, Sichuan University, Chengdu 610065, China
| | - Xiangyuan Li
- School of Chemical Engineering, Sichuan University, Chengdu 610065, China
- Engineering Research Center of Combustion and Cooling for Aerospace Power, Ministry of Education, Sichuan University, Chengdu 610065, China
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Medhi B, Sarma M. Deciphering the Internal Conversion Processes Involved in the Photochemical Ring-Opening of 1,3-Cyclohexadiene by Symmetric sp 2-Carbon Substitutions. J Phys Chem A 2024; 128:2025-2037. [PMID: 38426433 DOI: 10.1021/acs.jpca.4c00406] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/02/2024]
Abstract
Chemical substituents hold the potential to markedly influence the photochemical behavior in molecular systems and assist in gaining a comprehensive understanding of nonadiabatic phenomena. In this study, we have conducted a comparative analysis of the influence of chemical substituents on the photochemical ring-opening of 1,3-cyclohexadiene (CHD), considering four systems: CHD, 2,3-dimethylcyclohexadiene (CHD-Me2-1), 1,4-dimethylcyclohexadiene (CHD-Me2-2), and 1,2,3,4-tetramethylcyclohexadiene (CHD-Me4), using electronic structure theory calculations and nonadiabatic molecular dynamics simulations. Employing extended multistate complete active space second-order perturbation (XMS-CASPT2) theory, we optimized reactants, S1 states, conical intersections (CIns), and products, revealing structural and energetic variations consistent with prior research. Nonadiabatic molecular dynamics simulation was used to gain insights into photochemical dynamics at state-averaged complete active space self-consistent field (SA-CASSCF) theory. CHD-Me4 exhibited reduced carbon-carbon single bond rupture rates, responsible for ring-opening, due to substituent proximity. Further, CHD-Me2-2 and CHD-Me4 displayed prolonged excited-state relaxation times, highlighting notable substituents' impact. Analysis of kinetic energy profiles of specific carbon atoms also revealed restrained atomic displacements, particularly in CHD-Me2-2 and CHD-Me4. These findings advance our understanding of how substituents modulate photochemical reactions in cyclohexadiene derivatives, guiding new molecular design and future research.
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Affiliation(s)
- Biman Medhi
- Department of Chemistry, Indian Institute of Technology Guwahati, Guwahati, Assam 781039, India
| | - Manabendra Sarma
- Department of Chemistry, Indian Institute of Technology Guwahati, Guwahati, Assam 781039, India
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Shu Y, Akher FB, Guo H, Truhlar DG. Parametrically Managed Activation Functions for Improved Global Potential Energy Surfaces for Six Coupled 5A' States and Fourteen Coupled 3A' States of O + O 2. J Phys Chem A 2024; 128:1207-1217. [PMID: 38349764 DOI: 10.1021/acs.jpca.3c06823] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/15/2024]
Abstract
We report new potential energy surfaces for six coupled 5A' states and 14 coupled 3A' states of O3. The new surfaces are created by parametrically managed diabatization by deep neural network (PM-DDNN). The PM-DDNN method uses calculated adiabatic potential energy surfaces to discover and fit an underlying adiabatic-equivalent set of diabatic surfaces and their couplings and obtains the fit to the adiabatic surfaces by diagonalization of the diabatic potential energy matrix (DPEM). The procedure yields the adiabatic surfaces and their gradients, as well as the DPEM and its gradient. If desired one can also compute the nonadiabatic coupling due to the transformation. The present work improves on previous work by using a new coordinate to guide the decay of the neural network contribution to the many-body fit to the whole DPEM. The main objective was to obtain smoother potentials than the previous ones with better suitability for dynamics calculations, and this was achieved. Furthermore, we obtained suitably small deviations from the input reference data. For the six coupled 5A' surfaces, the 60,366 data below 10 eV are fit with a mean unsigned error (MUE) of 49 meV, and for the 14 coupled 3A' surfaces, the 76,733 data below 10 eV are fit with an MUE of 28 meV. The data below 5 eV fit even more accurately with MUEs of 37 meV (5A') and 20 meV (3A').
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Affiliation(s)
- Yinan Shu
- Department of Chemistry, Chemical Theory Center and Minnesota Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United States
| | - Farideh Badichi Akher
- Department of Chemistry, Chemical Theory Center and Minnesota Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United States
| | - Hua Guo
- Department of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131, United States
| | - Donald G Truhlar
- Department of Chemistry, Chemical Theory Center and Minnesota Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United States
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4
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Shchepanovska D, Shannon RJ, Curchod BFE, Glowacki DR. Nonadiabatic Kinetics in the Intermediate Coupling Regime: Comparing Molecular Dynamics to an Energy-Grained Master Equation. J Phys Chem A 2021; 125:3473-3488. [PMID: 33880919 DOI: 10.1021/acs.jpca.1c01260] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
We propose and test an extension of the energy-grained master equation (EGME) for treating nonadiabatic (NA) hopping between different potential energy surfaces, which enables us to model the competition between stepwise collisional relaxation and kinetic processes which transfer population between different electronic states of the same spin symmetry. By incorporating Zhu-Nakamura theory into the EGME, we are able to treat NA passages beyond the simple Landau-Zener approximation, along with the corresponding treatments of zero-point energy and tunneling probability. To evaluate the performance of this NA-EGME approach, we carried out detailed studies of the UV photodynamics of the volatile organic compound C6-hydroperoxy aldehyde (C6-HPALD) using on-the-fly ab initio molecular dynamics and trajectory surface hopping. For this multichromophore molecule, we show that the EGME is able to capture important aspects of the dynamics, including kinetic timescales, and diabatic trapping. Such an approach provides a promising and efficient strategy for treating the long-time dynamics of photoexcited molecules in regimes which are difficult to capture using atomistic on-the-fly molecular dynamics.
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Affiliation(s)
| | - Robin J Shannon
- School of Chemistry, University of Bristol, Bristol BS8 1TS, U.K
| | | | - David R Glowacki
- School of Chemistry, University of Bristol, Bristol BS8 1TS, U.K.,Intangible Realities Laboratory, University of Bristol, Bristol BS8 1UB, U.K.,Department of Computer Science, University of Bristol, Bristol BS8 1UB, U.K
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Sakaushi K. Quantum electrocatalysts: theoretical picture, electrochemical kinetic isotope effect analysis, and conjecture to understand microscopic mechanisms. Phys Chem Chem Phys 2020; 22:11219-11243. [DOI: 10.1039/d0cp01052a] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
The fundamental aspects of quantum electrocatalysts are discussed together with the newly developed electrochemical kinetic isotope effect (EC-KIE) approach.
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Affiliation(s)
- Ken Sakaushi
- Center for Green Research on Energy and Environmental Materials
- National Institute for Materials Science
- Tsukuba
- Japan
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Lykhin AO, Varganov SA. Intersystem crossing in tunneling regime: T 1 → S 0 relaxation in thiophosgene. Phys Chem Chem Phys 2020; 22:5500-5508. [PMID: 32101195 DOI: 10.1039/c9cp06956a] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
The T1 excited state relaxation in thiophosgene has attracted much attention as a relatively simple model for the intersystem crossing (ISC) transitions in polyatomic molecules. The very short (20-40 ps) T1 lifetime predicted in several theoretical studies strongly disagrees with the experimental values (∼20 ns) indicating that the kinetics of T1 → S0 ISC is not well understood. We use the nonadiabatic transition state theory (NA-TST) with the Zhu-Nakamura transition probability and the multireference perturbation theory (CASPT2) to show that the T1 → S0 ISC occurs in the quantum tunneling regime. We also introduce a new zero-point vibrational energy correction scheme that improves the accuracy of the predicted ISC rate constants at low internal energies. The predicted lifetimes of the T1 vibrational states are between one and two orders of magnitude larger than the experimental values. This overestimation is attributed to the multidimensional nature of quantum tunneling that facilitates ISC transitions along the non-minimum energy path and is not accounted for in the one-dimensional NA-TST.
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Affiliation(s)
- Aleksandr O Lykhin
- Department of Chemistry, University of Nevada, 1664 N. Virginia Street, Reno, Nevada 89557-0216, USA.
| | - Sergey A Varganov
- Department of Chemistry, University of Nevada, 1664 N. Virginia Street, Reno, Nevada 89557-0216, USA.
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Jansen TLC, Saito S, Jeon J, Cho M. Theory of coherent two-dimensional vibrational spectroscopy. J Chem Phys 2019; 150:100901. [DOI: 10.1063/1.5083966] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Thomas la Cour Jansen
- University of Groningen, Zernike Institute for Advanced Materials, Nijenborgh 4, 9747 AG Groningen, The Netherlands
| | - Shinji Saito
- Institute for Molecular Science, Myodaiji, Okazaki, Aichi 444-8585, Japan and The Graduate University for Advanced Studies, Myodaiji, Okazaki, Aichi 444-8585, Japan
| | - Jonggu Jeon
- Center for Molecular Spectroscopy and Dynamics, Institute for Basic Science (IBS), Seoul 02841, South Korea
| | - Minhaeng Cho
- Center for Molecular Spectroscopy and Dynamics, Institute for Basic Science (IBS), Seoul 02841, South Korea
- Department of Chemistry, Korea University, Seoul 02841, South Korea
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Ohta A, Kobayashi O, Danielache SO, Nanbu S. Nonadiabatic ab initio molecular dynamics with PME-ONIOM scheme of photoisomerization reaction between 1,3-cyclohexadiene and 1,3,5-cis-hexatriene in solution phase. Chem Phys 2017. [DOI: 10.1016/j.chemphys.2017.01.006] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
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9
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Kondorskiy AD, Nanbu S. Electronically nonadiabatic wave packet propagation using frozen Gaussian scattering. J Chem Phys 2015; 143:114103. [DOI: 10.1063/1.4930923] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Alexey D. Kondorskiy
- P. N. Lebedev Physical Institute of the Russian Academy of Sciences, 53, Leninsky Prospekt, Moscow 119991, Russia
| | - Shinkoh Nanbu
- Department of Materials and Life Sciences, Faculty of Science and Technology, Sophia University, 7-1 Kioi-cho, Chiyoda-ku, Tokyo 102-8554, Japan
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Nonadiabatic ab initio molecular dynamics of photoisomerization reaction between 1,3-cyclohexadiene and 1,3,5-cis-hexatriene. Chem Phys 2015. [DOI: 10.1016/j.chemphys.2015.07.024] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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11
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Jasper AW. Multidimensional Effects in Nonadiabatic Statistical Theories of Spin-Forbidden Kinetics: A Case Study of 3O + CO → CO2. J Phys Chem A 2015; 119:7339-51. [DOI: 10.1021/jp512942w] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Ahren W. Jasper
- Combustion
Research Facility, Sandia National Laboratories, Livermore, California 94551, United States
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Reimers JR, McKemmish LK, McKenzie RH, Hush NS. Non-adiabatic effects in thermochemistry, spectroscopy and kinetics: the general importance of all three Born–Oppenheimer breakdown corrections. Phys Chem Chem Phys 2015. [DOI: 10.1039/c5cp02238j] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Analytical and numerical solutions describing Born–Oppenheimer breakdown in a simple, widely applicable, model depict shortcomings in modern computational methods.
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Affiliation(s)
- Jeffrey R. Reimers
- International Centre for Quantum and Molecular Structure
- College of Sciences, Shanghai University
- Shanghai 200444
- China
- School of Mathematical and Physical Sciences
| | - Laura K. McKemmish
- Department of Physics and Astronomy
- University College London
- London
- UK
- School of Chemistry
| | - Ross H. McKenzie
- School of Mathematics and Physics
- The University of Queensland
- Australia
| | - Noel S. Hush
- School of Chemistry
- The University of Sydney
- Sydney
- Australia
- School of Molecular Biosciences
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13
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Jang S. Nonadiabatic quantum Liouville and master equations in the adiabatic basis. J Chem Phys 2012; 137:22A536. [DOI: 10.1063/1.4748142] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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14
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Shushkov P, Li R, Tully JC. Ring polymer molecular dynamics with surface hopping. J Chem Phys 2012; 137:22A549. [DOI: 10.1063/1.4766449] [Citation(s) in RCA: 90] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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15
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Granucci G, Persico M, Spighi G. Surface hopping trajectory simulations with spin-orbit and dynamical couplings. J Chem Phys 2012; 137:22A501. [DOI: 10.1063/1.4707737] [Citation(s) in RCA: 105] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Murakami T, Nakazono M, Kondorskiy A, Ishida T, Nanbu S. Photochemical dynamics of indolylmaleimide derivatives. Phys Chem Chem Phys 2012; 14:11546-55. [DOI: 10.1039/c2cp41269a] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
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17
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de la Lande A, Řezáč J, Lévy B, Sanders BC, Salahub DR. Transmission coefficients for chemical reactions with multiple states: role of quantum decoherence. J Am Chem Soc 2011; 133:3883-94. [PMID: 21344903 DOI: 10.1021/ja107950m] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Transition-state theory (TST) is a widely accepted paradigm for rationalizing the kinetics of chemical reactions involving one potential energy surface (PES). Multiple PES reaction rate constants can also be estimated within semiclassical approaches provided the hopping probability between the quantum states is taken into account when determining the transmission coefficient. In the Marcus theory of electron transfer, this hopping probability was historically calculated with models such as Landau-Zener theory. Although the hopping probability is intimately related to the question of the transition from the fully quantum to the semiclassical description, this issue is not adequately handled in physicochemical models commonly in use. In particular, quantum nuclear effects such as decoherence or dephasing are not present in the rate constant expressions. Retaining the convenient semiclassical picture, we include these effects through the introduction of a phenomenological quantum decoherence function. A simple modification to the usual TST rate constant expression is proposed: in addition to the electronic coupling, a characteristic decoherence time τ(dec) now also appears as a key parameter of the rate constant. This new parameter captures the idea that molecular systems, although intrinsically obeying quantum mechanical laws, behave semiclassically after a finite but nonzero amount of time (τ(dec)). This new degree of freedom allows a fresh look at the underlying physics of chemical reactions involving more than one quantum state. The ability of the proposed formula to describe the main physical lines of the phenomenon is confirmed by comparison with results obtained from density functional theory molecular dynamics simulations for a triplet to singlet transition within a copper dioxygen adduct relevant to the question of dioxygen activation by copper monooxygenases.
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Affiliation(s)
- Aurélien de la Lande
- Laboratoire de Chimie Physique-CNRS UMR 8000, Université Paris-Sud 11, Bât. 349, Campus d'Orsay, 15 rue Jean Perrin, 91 405 Orsay Cedex, France.
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Kondorskiy A, Nanbu S, Teranishi Y, Nakamura H. Control of Chemical Dynamics by Lasers: Theoretical Considerations. J Phys Chem A 2010; 114:6171-87. [DOI: 10.1021/jp911579h] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Alexey Kondorskiy
- Institute for Molecular Science, National Institutes of Natural Sciences, Myodaiji, Okazaki 444-8585, Japan
| | - Shinkoh Nanbu
- Institute for Molecular Science, National Institutes of Natural Sciences, Myodaiji, Okazaki 444-8585, Japan
| | - Yoshiaki Teranishi
- Institute for Molecular Science, National Institutes of Natural Sciences, Myodaiji, Okazaki 444-8585, Japan
| | - Hiroki Nakamura
- Institute for Molecular Science, National Institutes of Natural Sciences, Myodaiji, Okazaki 444-8585, Japan
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Maeda S, Ohno K, Morokuma K. Updated Branching Plane for Finding Conical Intersections without Coupling Derivative Vectors. J Chem Theory Comput 2010; 6:1538-45. [DOI: 10.1021/ct1000268] [Citation(s) in RCA: 117] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Affiliation(s)
- Satoshi Maeda
- Fukui Institute for Fundamental Chemistry, Kyoto University, Kyoto 606-8103, Japan, Toyota Physical and Chemical Research Institute, Nagakute, Aichi 480−1192, Japan, and Department of Chemistry and Cherry L. Emerson Center for Scientific Computation, Emory University, Atlanta, Georgia 30322
| | - Koichi Ohno
- Fukui Institute for Fundamental Chemistry, Kyoto University, Kyoto 606-8103, Japan, Toyota Physical and Chemical Research Institute, Nagakute, Aichi 480−1192, Japan, and Department of Chemistry and Cherry L. Emerson Center for Scientific Computation, Emory University, Atlanta, Georgia 30322
| | - Keiji Morokuma
- Fukui Institute for Fundamental Chemistry, Kyoto University, Kyoto 606-8103, Japan, Toyota Physical and Chemical Research Institute, Nagakute, Aichi 480−1192, Japan, and Department of Chemistry and Cherry L. Emerson Center for Scientific Computation, Emory University, Atlanta, Georgia 30322
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Nanbu S, Ishida T, Nakamura H. Future perspectives of nonadiabatic chemical dynamics. Chem Sci 2010. [DOI: 10.1039/c0sc00274g] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
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21
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Nonadiabatic Chemical Dynamics: Comprehension and Control of Dynamics, and Manifestation of Molecular Functions. ADVANCES IN CHEMICAL PHYSICS 2008. [DOI: 10.1002/9780470259474.ch3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register]
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22
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Gómez-Carrasco S, Luz Hernández M, Alvariño JM. Quantum and quasiclassical state-selected O(1D) + HF reaction dynamics and kinetics on a new MRCI ground singlet potential energy surface. Chem Phys Lett 2007. [DOI: 10.1016/j.cplett.2006.12.073] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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