1
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Biswas R, Chen Y, Vela J, Rossini AJ. Relativistic DFT Calculations of Cadmium and Selenium Solid-State NMR Spectra of CdSe Nanocrystal Surfaces. ACS OMEGA 2023; 8:44362-44371. [PMID: 38027327 PMCID: PMC10666156 DOI: 10.1021/acsomega.3c07680] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/03/2023] [Revised: 10/11/2023] [Accepted: 10/16/2023] [Indexed: 12/01/2023]
Abstract
Solid-state NMR spectra have been used to probe the structure of CdSe nanocrystals and propose detailed models of their surface structures. Density functional theory (DFT)-optimized cluster models that represent probable molecular structures of carboxylate-coordinated surface sites have been proposed. However, to the best of our knowledge, 113Cd and 77Se chemical shifts have not been calculated for these surface models. We performed relativistic DFT calculations of cadmium and selenium magnetic shielding tensors on model compounds with previously measured solid-state NMR spectra with (i) the four-component Dirac-Kohn-Sham (DKS) Hamiltonian and (ii) the scalar and (iii) spin-orbit levels within the ZORA Hamiltonian. Molecular clusters with Cd and Se sites in varying bonding environments were used to model CdSe (100) and CdSe(111) surfaces capped with carboxylic acid ligands. Our calculations identify the observed 113Cd isotropic chemical shifts δ(iso) of -465, -318, and -146 ppm arising from CdSeO3, CdSe2O2, and CdSe3O surface groups, respectively, with very good agreement with experimental measurements. The 113Cd chemical shifts linearly decrease with the number of O-neighbors. The calculated spans (δ11 - δ33) encompass the experimental values for CdSe3O and CdSe2O2 clusters but are slightly larger than the measured value for CdSeO3 clusters. Relativistic DFT calculations predicted a one-bond 113Cd-77Se scalar coupling of 258 Hz, which is in good agreement with the experimental values of 250 Hz. With a dense coverage of carboxylic acid ligands, the CdSe (100) surface shows a distribution of Cd-Se bond lengths and J-couplings. Relativistic DFT simulations thus aid in interpretation of NMR spectra of CdSe nanocrystals and related nanomaterials.
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Affiliation(s)
- Rana Biswas
- U.S.
Department of Energy Ames National Laboratory, Ames, Iowa 50011. United States
- Department
of Physics and Astronomy; Electrical & Computer Engineering; Microelectronics
Research Center, Iowa State University, Ames, Iowa 50011. United States
| | - Yunhua Chen
- U.S.
Department of Energy Ames National Laboratory, Ames, Iowa 50011. United States
- Department
of Chemistry, Iowa State University, Ames, Iowa 50011. United States
| | - Javier Vela
- U.S.
Department of Energy Ames National Laboratory, Ames, Iowa 50011. United States
- Department
of Chemistry, Iowa State University, Ames, Iowa 50011. United States
| | - Aaron J. Rossini
- U.S.
Department of Energy Ames National Laboratory, Ames, Iowa 50011. United States
- Department
of Chemistry, Iowa State University, Ames, Iowa 50011. United States
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2
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Dey S, Roesler F, Höfler MV, Bruhn C, Gutmann T, Pietschnig R. Synthesis, Structure and Cu‐Phenylacetylide Coordination of an Unsymmetrically Substituted Bulky dppf‐Analog. Eur J Inorg Chem 2021. [DOI: 10.1002/ejic.202100939] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Subhayan Dey
- Institute for Chemistry and CINSaT University of Kassel Heinrich Plett-Straße 40 34132 Kassel Germany
| | - Fabian Roesler
- Institute for Chemistry and CINSaT University of Kassel Heinrich Plett-Straße 40 34132 Kassel Germany
| | - Mark V. Höfler
- Technical University Darmstadt Eduard Zintl-Institute for Inorganic and Physical Chemistry Alarich-Weiss-Straße 8 64287 Darmstadt Germany
| | - Clemens Bruhn
- Institute for Chemistry and CINSaT University of Kassel Heinrich Plett-Straße 40 34132 Kassel Germany
| | - Torsten Gutmann
- Technical University Darmstadt Eduard Zintl-Institute for Inorganic and Physical Chemistry Alarich-Weiss-Straße 8 64287 Darmstadt Germany
| | - Rudolf Pietschnig
- Institute for Chemistry and CINSaT University of Kassel Heinrich Plett-Straße 40 34132 Kassel Germany
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3
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Mames A, Pietrzak M, Bernatowicz P, Kubas A, Luboradzki R, Ratajczyk T. NMR Crystallography Enhanced by Quantum Chemical Calculations and Liquid State NMR Spectroscopy for the Investigation of Se-NHC Adducts*. Chemistry 2021; 27:16477-16487. [PMID: 34606111 DOI: 10.1002/chem.202102800] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2021] [Indexed: 11/11/2022]
Abstract
N-heterocyclic carbene ligands (NHC) are widely utilized in catalysis and material science. They are characterized by their steric and electronic properties. Steric properties are usually quantified on the basis of their static structure, which can be determined by X-ray diffraction. The electronic properties are estimated in the liquid state; for example, via the 77 Se liquid state NMR of Se-NHC adducts. We demonstrate that 77 Se NMR crystallography can contribute to the characterization of the structural and electronic properties of NHC in solid and liquid states. Selected Se-NHC adducts are investigated via 77 Se solid state NMR and X-ray crystallography, supported by quantum chemical calculations. This investigation reveals a correlation between the molecular structure of adducts and NMR parameters, including not only isotropic chemical shifts but also the other chemical shift tensor components. Afterwards, the liquid state 77 Se NMR data is presented and interpreted in terms of the quantum chemistry modelling. The discrepancy between the structural and electronic properties, and in particular the π-accepting abilities of adducts in the solid and liquid states is discussed. Finally, the 13 C isotropic chemical shift from the liquid state NMR and the 13 C tensor components are also discussed, and compared with their 77 Se counterparts. 77 Se NMR crystallography can deliver valuable information about NHC ligands, and together with liquid state 77 Se NMR can provide an in-depth outlook on the properties of NHC ligands.
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Affiliation(s)
- Adam Mames
- Institute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224, Warsaw, Poland
| | - Mariusz Pietrzak
- Institute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224, Warsaw, Poland
| | - Piotr Bernatowicz
- Institute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224, Warsaw, Poland
| | - Adam Kubas
- Institute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224, Warsaw, Poland
| | - Roman Luboradzki
- Institute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224, Warsaw, Poland
| | - Tomasz Ratajczyk
- Institute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224, Warsaw, Poland
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4
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Rusakova IL, Rusakov YY. Quantum chemical calculations of 77 Se and 125 Te nuclear magnetic resonance spectral parameters and their structural applications. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2021; 59:359-407. [PMID: 33095923 DOI: 10.1002/mrc.5111] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/12/2020] [Revised: 09/01/2020] [Accepted: 10/07/2020] [Indexed: 06/11/2023]
Abstract
An accurate quantum chemical (QC) modeling of 77 Se and 125 Te nuclear magnetic resonance (NMR) spectra is deeply involved in the NMR structural assignment for selenium and tellurium compounds that are of utmost importance both in organic and inorganic chemistry nowadays due to their huge application potential in many fields, like biology, medicine, and metallurgy. The main interest of this review is focused on the progress in QC computations of 77 Se and 125 Te NMR chemical shifts and indirect spin-spin coupling constants involving these nuclei. Different computational methodologies that have been used to simulate the NMR spectra of selenium and tellurium compounds since the middle of the 1990s are discussed with a strong emphasis on their accuracy. A special accent is placed on the calculations resorting to the relativistic methodologies, because taking into account the relativistic effects appreciably influences the precision of NMR calculations of selenium and, especially, tellurium compounds. Stereochemical applications of quantum chemical calculations of 77 Se and 125 Te NMR parameters are discussed so as to exemplify the importance of integrated approach of experimental and computational NMR techniques.
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Affiliation(s)
- Irina L Rusakova
- A. E. Favorsky Irkutsk Institute of Chemistry, Siberian Branch of the Russian Academy of Sciences, Irkutsk, Russian Federation
| | - Yuriy Yu Rusakov
- A. E. Favorsky Irkutsk Institute of Chemistry, Siberian Branch of the Russian Academy of Sciences, Irkutsk, Russian Federation
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5
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Hernández-Ayala LF, Reina M, Flores-Alamo M, Ruiz-Azuara L. Pyridyl based mono and di-selenoethers: Synthesis, characterization and DFT study. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2019.127449] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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6
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Chernyshov IY, Vener MV, Shenderovich IG. Local-structure effects on 31P NMR chemical shift tensors in solid state. J Chem Phys 2019; 150:144706. [PMID: 30981271 DOI: 10.1063/1.5075519] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022] Open
Abstract
The effect of the local structure on the 31P NMR chemical shift tensor (CST) has been studied experimentally and simulated theoretically using the density functional theory gauge-independent-atomic-orbital approach. It has been shown that the dominating impact comes from a small number of noncovalent interactions between the phosphorus-containing group under question and the atoms of adjacent molecules. These interactions can be unambiguously identified using the Bader analysis of the electronic density. A robust and computationally effective approach designed to attribute a given experimental 31P CST to a certain local morphology has been elaborated. This approach can be useful in studies of surfaces, complex molecular systems, and amorphous materials.
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Affiliation(s)
- Ivan Yu Chernyshov
- Department of Quantum Chemistry, D. Mendeleev University of Chemical Technology, Moscow 125047, Russia
| | - Mikhail V Vener
- Department of Quantum Chemistry, D. Mendeleev University of Chemical Technology, Moscow 125047, Russia
| | - Ilya G Shenderovich
- Institute of Organic Chemistry, University of Regensburg, 93053 Regensburg, Germany
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Rusakov YY, Rusakova IL, Krivdin LB. MP2 calculation of (77) Se NMR chemical shifts taking into account relativistic corrections. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2015; 53:485-492. [PMID: 25998325 DOI: 10.1002/mrc.4226] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/17/2014] [Revised: 01/26/2015] [Accepted: 01/29/2015] [Indexed: 06/04/2023]
Abstract
The main factors affecting the accuracy and computational cost of the Second-order Möller-Plesset perturbation theory (MP2) calculation of (77) Se NMR chemical shifts (methods and basis sets, relativistic corrections, and solvent effects) are addressed with a special emphasis on relativistic effects. For the latter, paramagnetic contribution (390-466 ppm) dominates over diamagnetic term (192-198 ppm) resulting in a total shielding relativistic correction of about 230-260 ppm (some 15% of the total values of selenium absolute shielding constants). Diamagnetic term is practically constant, while paramagnetic contribution spans over 70-80 ppm. In the (77) Se NMR chemical shifts scale, relativistic corrections are about 20-30 ppm (some 5% of the total values of selenium chemical shifts). Solvent effects evaluated within the polarizable continuum solvation model are of the same order of magnitude as relativistic corrections (about 5%). For the practical calculations of (77) Se NMR chemical shifts of the medium-sized organoselenium compounds, the most efficient computational protocols employing relativistic Dyall's basis sets and taking into account relativistic and solvent corrections are suggested. The best result is characterized by a mean absolute error of 17 ppm for the span of (77) Se NMR chemical shifts reaching 2500 ppm resulting in a mean absolute percentage error of 0.7%.
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Affiliation(s)
- Yury Yu Rusakov
- Siberian Branch of the Russian Academy of Sciences, A. E. Favorsky Irkutsk Institute of Chemistry, Favorsky St 1, Irkutsk, 664033, Russia
| | - Irina L Rusakova
- Siberian Branch of the Russian Academy of Sciences, A. E. Favorsky Irkutsk Institute of Chemistry, Favorsky St 1, Irkutsk, 664033, Russia
| | - Leonid B Krivdin
- Siberian Branch of the Russian Academy of Sciences, A. E. Favorsky Irkutsk Institute of Chemistry, Favorsky St 1, Irkutsk, 664033, Russia
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8
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Struppe J, Zhang Y, Rozovsky S. (77)Se chemical shift tensor of L-selenocystine: experimental NMR measurements and quantum chemical investigations of structural effects. J Phys Chem B 2015; 119:3643-50. [PMID: 25654666 DOI: 10.1021/jp510857s] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
The genetically encoded amino acid selenocysteine and its dimeric form, selenocystine, are both utilized by nature. They are found in active sites of selenoproteins, enzymes that facilitate a diverse range of reactions, including the detoxification of reactive oxygen species and regulation of redox pathways. Due to selenocysteine and selenocystine's specialized biological roles, it is of interest to examine their (77)Se NMR properties and how those can in turn be employed to study biological systems. We report the solid-state (77)Se NMR measurements of the L-selenocystine chemical shift tensor, which provides the first experimental chemical shift tensor information on selenocysteine-containing systems. Quantum chemical calculations of L-selenocystine models were performed to help understand various structural effects on (77)Se L-selenocystine's chemical shift tensor. The effects of protonation state, protein environment, and substituent of selenium-bonded carbon on the isotropic chemical shift were found to be in a range of ca. 10-20 ppm. However, the conformational effect was found to be much larger, spanning ca. 600 ppm for the C-Se-Se-C dihedral angle range of -180° to +180°. Our calculations show that around the minimum energy structure with a C-Se-Se-C dihedral angle of ca. -90°, the energy costs to alter the dihedral angle in the range from -120° to -60° are within only 2.5 kcal/mol. This makes it possible to realize these conformations in a protein or crystal environment. (77)Se NMR was found to be a sensitive probe to such changes and has an isotropic chemical shift range of 272 ± 30 ppm for this energetically favorable conformation range. The energy-minimized structures exhibited calculated isotropic shifts that lay within 3-9% of those reported in previous solution NMR studies. The experimental solid-state NMR isotropic chemical shift is near the lower bound of this calculated range for these readily accessible conformations. These results suggest that the dihedral information may be deduced for a protein with appropriate structural models. These first-time experimental and theoretical results will facilitate future NMR studies of selenium-containing compounds and proteins.
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Affiliation(s)
- Jochem Struppe
- Bruker BioSpin Corporation, 15 Fortune Drive, Manning Park, Billerica, Massachusetts 01821, United States
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9
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Wrackmeyer B, Klimkina EV, Milius W. Reactions of 1,3,2‐Diselenaphospholanes with Lewis Acids: Borane and (Pentamethylcyclopentadienyl)rhodium and ‐iridium Dichloride. Eur J Inorg Chem 2014. [DOI: 10.1002/ejic.201402486] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Bernd Wrackmeyer
- Anorganische Chemie II, Universität Bayreuth, 95440 Bayreuth, Germany, http://www.ac2.uni‐bayreuth.de
| | - Elena V. Klimkina
- Anorganische Chemie II, Universität Bayreuth, 95440 Bayreuth, Germany, http://www.ac2.uni‐bayreuth.de
| | - Wolfgang Milius
- Anorganische Chemie I, Universität Bayreuth, 95440 Bayreuth, Germany
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10
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Viger-Gravel J, Meyer JE, Korobkov I, Bryce DL. Probing halogen bonds with solid-state NMR spectroscopy: observation and interpretation of J(77Se,31P) coupling in halogen-bonded PSe⋯I motifs. CrystEngComm 2014. [DOI: 10.1039/c4ce00345d] [Citation(s) in RCA: 43] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
Intra-halogen bond J couplings measured via NMR spectroscopy and interpreted using natural localized molecular orbitals offer novel insights into this class of non-covalent interaction.
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Affiliation(s)
- Jasmine Viger-Gravel
- Department of Chemistry and Center for Catalysis Research and Innovation
- University of Ottawa
- Ottawa, Canada
| | - Julia E. Meyer
- Department of Chemistry and Center for Catalysis Research and Innovation
- University of Ottawa
- Ottawa, Canada
| | - Ilia Korobkov
- Department of Chemistry and Center for Catalysis Research and Innovation
- University of Ottawa
- Ottawa, Canada
| | - David L. Bryce
- Department of Chemistry and Center for Catalysis Research and Innovation
- University of Ottawa
- Ottawa, Canada
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12
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Oxidation of 1,3,2-diselenaphospholanes with an annelated dicarba-closo-dodecaborane(12) unit by addition of sulfur and selenium. Molecular structure of a novel 1,2,4,5-tetraselena-3-phospha heterocycle. J Organomet Chem 2013. [DOI: 10.1016/j.jorganchem.2013.03.028] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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13
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Zielińska-Błajet M, Boratyński PJ, Palus J, Skarżewski J. Chiral benzisoselenazolones: conformational analysis based on experimental and DFT calculated 77Se NMR. Tetrahedron 2013. [DOI: 10.1016/j.tet.2013.10.049] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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14
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Wrackmeyer B, Klimkina EV, Milius W. Selective Consecutive Insertion of Alkynes into the B-Se Bonds of 1,3,2-Diselenaborolane Derivatives: Synthesis and Molecular Structures of Nine-Membered Rings. Eur J Inorg Chem 2012. [DOI: 10.1002/ejic.201200471] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
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15
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Wrackmeyer B, Klimkina EV, Milius W. 2‐Halogeno‐1,3,2‐diselenaphospholanes with an Annelated Dicarba‐
closo
‐dodecaborane(12) Unit: Synthesis, Molecular Structure and Reactivity. Eur J Inorg Chem 2012. [DOI: 10.1002/ejic.201200163] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Bernd Wrackmeyer
- Anorganische Chemie II, Universität Bayreuth, 95440 Bayreuth, Germany, Fax: +49‐921‐552157
| | - Elena V. Klimkina
- Anorganische Chemie II, Universität Bayreuth, 95440 Bayreuth, Germany, Fax: +49‐921‐552157
| | - Wolfgang Milius
- Anorganische Chemie I, Universität Bayreuth, 95440 Bayreuth, Germany
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16
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Wrackmeyer B, Klimkina EV, Milius W. Molecular Structures, Reactivity, and NMR Spectroscopic Studies of Cyclic and Non-cyclic Silyl-substituted 1, 2-Dicarba-closo-dodecaborane(12) Derivatives. Z Anorg Allg Chem 2012. [DOI: 10.1002/zaac.201200027] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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17
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Jakobsen HJ, Bildsøe H, Skibsted J, Brorson M, Hung I, Gan Z. Synthesis of 17O-Labeled Cs2WO4 and Its Ambient- and Low-Temperature Solid-State 17O MAS NMR Spectra. Inorg Chem 2011; 50:7676-84. [DOI: 10.1021/ic200722a] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Hans J. Jakobsen
- Instrument Centre for Solid-State NMR Spectroscopy and Interdisciplinary Nanoscience Center (iNANO), Department of Chemistry, DK-8000 Aarhus C, Denmark
| | - Henrik Bildsøe
- Instrument Centre for Solid-State NMR Spectroscopy and Interdisciplinary Nanoscience Center (iNANO), Department of Chemistry, DK-8000 Aarhus C, Denmark
| | - Jørgen Skibsted
- Instrument Centre for Solid-State NMR Spectroscopy and Interdisciplinary Nanoscience Center (iNANO), Department of Chemistry, DK-8000 Aarhus C, Denmark
| | - Michael Brorson
- Haldor Topsøe A/S, Nymøllevej 55, Aarhus University, DK-8000 Aarhus C, Denmark
| | - Ivan Hung
- National High Magnetic Field Laboratory, 1800 East Paul Dirac Drive, Tallahassee, Florida 32310, United States
| | - Zhehong Gan
- National High Magnetic Field Laboratory, 1800 East Paul Dirac Drive, Tallahassee, Florida 32310, United States
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18
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Nakanishi W, Hayashi S, Katsura Y, Hada M. Relativistic Effect on 77Se NMR Chemical Shifts of Various Selenium Species in the Framework of Zeroth-Order Regular Approximation. J Phys Chem A 2011; 115:8721-30. [DOI: 10.1021/jp202278f] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Affiliation(s)
- Waro Nakanishi
- Department of Material Science and Chemistry, Faculty of Systems Engineering, Wakayama University, 930 Sakaedani, Wakayama 640-8510, Japan
| | - Satoko Hayashi
- Department of Material Science and Chemistry, Faculty of Systems Engineering, Wakayama University, 930 Sakaedani, Wakayama 640-8510, Japan
| | - Yoshifumi Katsura
- Department of Material Science and Chemistry, Faculty of Systems Engineering, Wakayama University, 930 Sakaedani, Wakayama 640-8510, Japan
| | - Masahiko Hada
- Department of Chemistry, Graduate School of Science, Tokyo Metropolitan University, 1-1 Minami-Osawa, Hachioji-shi, Tokyo 192-0397, Japan
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Wrackmeyer B, Klimkina EV, Milius W, Bauer T, Kempe R. Synthesis and reactivity of 4,5-[1,2-dicarba-closo-dodecaborano(12)]-1,3-diselenacyclopentane: opening of the icosahedron to give a zwitterionic intermediate and conversion into 7,8-dicarba-nido-undecaborate(1-). Chemistry 2011; 17:3238-51. [PMID: 21308806 DOI: 10.1002/chem.201002277] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2010] [Indexed: 12/21/2022]
Abstract
The reaction of the 1,2-diselenolato-1,2-dicarba-closo-dodecaborane(12) dianion [1,2-(1,2-C(2)B(10)H(10))Se(2)](2-) with dichloromethane (CH(2)Cl(2) or CD(2)Cl(2)) in the presence of donor solvents gave 4,5-[1,2-dicarba-closo-dodecaborano(12)]-1,3-diselenacyclopentane, the title compound, which was characterized by X-ray structural analysis and NMR spectroscopy ((1)H, (11)B, (13)C, and (77)Se). In the presence of pyridine, opening of the icosahedron took place, and a zwitterionic intermediate was isolated and fully characterized in the solid state by X-ray diffraction and in solution by multinuclear magnetic resonance techniques. Although such types of intermediates, prior to deboronation of the ortho-carborane cage, have been proposed several times, this is first example for which the structure has been confirmed unambiguously. This intermediate possesses a nido structure and contains a 7,8-dicarba-nido-undecaborate(1-) anion and a boronium cation, the latter with two pyridine rings linked to the boron atom, which has been extruded from the cage. It was shown that this process is reversible as long as the deboronation is not complete. The formation of the intermediate is accompanied by deboronation, which leads to the 7,8-dicarba-nido-undecaborate(1-) anion. The latter was prepared independently by conventional routes from the title compound, isolated as crystalline material as the tetrabutyl ammonium salt, and characterized by X-ray structural analysis and multinuclear magnetic resonance spectroscopy ((1)H, (11)B, (13)C, and (77)Se).
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Affiliation(s)
- Bernd Wrackmeyer
- Anorganische Chemie II, Universität Bayreuth, Universitätsstrasse 30, NW I, 95440 Bayreuth, Germany.
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20
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Sutrisno A, Lo AY, Tang JA, Dutton JL, Farrar GJ, Ragogna PJ, Zheng S, Autschbach J, Schurko RW. Experimental and theoretical investigations of selenium nuclear magnetic shielding tensors in Se–N heterocycles. CAN J CHEM 2009. [DOI: 10.1139/v09-100] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
A preliminary study involving solid-state 77Se NMR spectroscopy and first principles calculations of 77Se NMR parameters in Se–N heterocycles is reported. 77Se CP/MAS NMR spectra of the ring systems reveal expansive selenium chemical shift (CS) tensors, which are extremely sensitive to molecular geometry, symmetry, ligand substitution, and intermolecular contacts. For systems with known crystal structures, hybrid density functional theory (DFT) calculations of selenium nuclear magnetic shielding (NMS) tensors were carried out, and tensor orientations in the molecular frames examined. Additional DFT calculations of selenium NMS tensors are presented, along with a detailed analysis of pairs of occupied and virtual molecular orbitals that give rise to the Se NMS tensors. A new naturalized local molecular orbital (NLMO) analysis under the same DFT framework is also discussed. Collectively, the NMR data and first principles calculations provide understanding of the influences of electronic structure, bonding, and intermolecular interactions on the selenium NMS tensors, allowing for (i) prediction of unknown molecular structures and (ii) insight into the positions of the stereochemically active selenium lone pairs.
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Affiliation(s)
- Andre Sutrisno
- Department of Chemistry and Biochemistry, University of Windsor, Windsor, ON N9B 3P4, Canada
- Department of Chemistry, The University of Western Ontario, London, ON N6A 5B7, Canada
- Department of Chemistry, The State University of New York, Buffalo, NY 14260-3000, USA
| | - Andy Y.H. Lo
- Department of Chemistry and Biochemistry, University of Windsor, Windsor, ON N9B 3P4, Canada
- Department of Chemistry, The University of Western Ontario, London, ON N6A 5B7, Canada
- Department of Chemistry, The State University of New York, Buffalo, NY 14260-3000, USA
| | - Joel A. Tang
- Department of Chemistry and Biochemistry, University of Windsor, Windsor, ON N9B 3P4, Canada
- Department of Chemistry, The University of Western Ontario, London, ON N6A 5B7, Canada
- Department of Chemistry, The State University of New York, Buffalo, NY 14260-3000, USA
| | - Jason L. Dutton
- Department of Chemistry and Biochemistry, University of Windsor, Windsor, ON N9B 3P4, Canada
- Department of Chemistry, The University of Western Ontario, London, ON N6A 5B7, Canada
- Department of Chemistry, The State University of New York, Buffalo, NY 14260-3000, USA
| | - Gregg J. Farrar
- Department of Chemistry and Biochemistry, University of Windsor, Windsor, ON N9B 3P4, Canada
- Department of Chemistry, The University of Western Ontario, London, ON N6A 5B7, Canada
- Department of Chemistry, The State University of New York, Buffalo, NY 14260-3000, USA
| | - Paul J. Ragogna
- Department of Chemistry and Biochemistry, University of Windsor, Windsor, ON N9B 3P4, Canada
- Department of Chemistry, The University of Western Ontario, London, ON N6A 5B7, Canada
- Department of Chemistry, The State University of New York, Buffalo, NY 14260-3000, USA
| | - Shaohui Zheng
- Department of Chemistry and Biochemistry, University of Windsor, Windsor, ON N9B 3P4, Canada
- Department of Chemistry, The University of Western Ontario, London, ON N6A 5B7, Canada
- Department of Chemistry, The State University of New York, Buffalo, NY 14260-3000, USA
| | - Jochen Autschbach
- Department of Chemistry and Biochemistry, University of Windsor, Windsor, ON N9B 3P4, Canada
- Department of Chemistry, The University of Western Ontario, London, ON N6A 5B7, Canada
- Department of Chemistry, The State University of New York, Buffalo, NY 14260-3000, USA
| | - Robert W. Schurko
- Department of Chemistry and Biochemistry, University of Windsor, Windsor, ON N9B 3P4, Canada
- Department of Chemistry, The University of Western Ontario, London, ON N6A 5B7, Canada
- Department of Chemistry, The State University of New York, Buffalo, NY 14260-3000, USA
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Jakobsen HJ, Bildsøe H, Skibsted J, Brorson M, Srinivasan BR, Näther C, Bensch W. New opportunities in acquisition and analysis of natural abundance complex solid-state 33S MAS NMR spectra: (CH3NH3)2WS4. Phys Chem Chem Phys 2009; 11:6981-6. [DOI: 10.1039/b904841n] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Demko BA, Wasylishen RE. Probing solid iminobis(diorganophosphine chalcogenide) systems with multinuclear magnetic resonance. CAN J CHEM 2009. [DOI: 10.1139/v08-150] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
A 31P and 77Se solid-state NMR investigation of the iminobis(diorganophosphine chalcogenide) HN(R2PE)2 (R = Ph,iPr; E = O, S, Se) systems is presented. The NMR results are discussed in terms of the known HN(R2PE)2 structures available from X-ray crystallography. The phosphorus chemical shift tensors are found to be sensitive to the nature of the alkyl and chalcogen substituents. The nature of the R group also influences the selenium chemical shift tensors of HN(R2PSe)2 (R = Ph, iPr), which are shown to be sensitive to hydrogen bonding in the dimer structure of HN(Ph2PSe)2 and to the presence of disorder in the case of HN(iPr2PSe)2. Scalar relativistic ZORA DFT nuclear magnetic shielding tensor calculations were performed yielding the orientations of the corresponding chemical shift tensors. A theoretical investigation into the effect of the E-P···P-E “torsion” angle on the phosphorus and selenium chemical shift tensors of a truncated HN(Me2PSe)2 system indicates that the electronic effect of the alkyl group on the respective nuclear magnetic shielding tensors are more important than the steric effect of the E-P···P-E torsion angle.Key words: iminobis(diorganophosphine chalcogenide), solid-state NMR, 31P NMR, 77Se NMR, ZORA DFT.
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Gajda J, Potrzebowski MJ, Bujacz A, Bujacz G. Application of the 77Se Solid State NMR for Investigation of Bioorganic Compounds—the Case of Selenomethionine. PHOSPHORUS SULFUR 2008. [DOI: 10.1080/10426500801901111] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
Affiliation(s)
- Jarosław Gajda
- a Polish Academy of Sciences , Center of Molecular and Macromolecular Studies , Łódź, Poland
| | - Marek J. Potrzebowski
- a Polish Academy of Sciences , Center of Molecular and Macromolecular Studies , Łódź, Poland
| | - Anna Bujacz
- b Institute of Technical Biochemistry, Technical University of Łódź , Łódź, Poland
| | - Grzegorz Bujacz
- b Institute of Technical Biochemistry, Technical University of Łódź , Łódź, Poland
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Demko BA, Wasylishen RE. Comparing Main Group and Transition-Metal Square-Planar Complexes of the Diselenoimidodiphosphinate Anion: A Solid-State NMR Investigation of M[N(iPr2PSe)2]2 (M = Se, Te; Pd, Pt). Inorg Chem 2008; 47:2786-97. [DOI: 10.1021/ic7019999] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Bryan A. Demko
- Department of Chemistry, Gunning/Lemieux Chemistry Centre, University of Alberta, Edmonton, AB T6G 2G2, Canada
| | - Roderick E. Wasylishen
- Department of Chemistry, Gunning/Lemieux Chemistry Centre, University of Alberta, Edmonton, AB T6G 2G2, Canada
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Demko BA, Wasylishen RE. A solid-state NMR investigation of single-source precursors for group 12 metal selenides; M[N(iPr2PSe)2]2(M = Zn, Cd, Hg). Dalton Trans 2008:481-90. [DOI: 10.1039/b712011g] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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26
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Bayse CA, Antony S. Molecular modeling of bioactive selenium compounds. MAIN GROUP CHEMISTRY 2007. [DOI: 10.1080/10241220801994700] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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