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Hattori K, Wang D, Fujii A. Influence of the microsolvation on hemibonded and protonated hydrogen sulfide: infrared spectroscopy of [(H 2S) n(X) 1] + and H +(H 2S) n(X) 1 (n = 1 and 2, X = water, methanol, and ethanol). Phys Chem Chem Phys 2019; 21:16064-16074. [PMID: 31259331 DOI: 10.1039/c9cp03159f] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Changes of the excess charge accommodation motif in hemibonded and protonated hydrogen sulfide by microsolvation are studied by infrared spectroscopy of [(H2S)n(X)1]+ and H+(H2S)n(X)1 (n = 1 and 2, X = water, methanol, and ethanol) clusters. While the hemibond in the (H2S)2+ ion core is stable to the microhydration by a single water molecule, the hemibond is broken by the proton transfer with the microsolvation by a single methanol or ethanol molecule. Hetero hemibond formation between hydrogen sulfide and these solvent molecules is not observed. On the other hand, the excess proton in H+(H2S)n can be easily transferred to the solvent molecule, even though the proton affinity of the solvent molecule is lower than that of hydrogen sulfide. Implications of these results to the charge accommodation by sulfur under the biological conditions are discussed.
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Affiliation(s)
- Keigo Hattori
- Department of Chemistry, Graduate School of Science, Tohoku University, Sendai 980-8578, Japan.
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2
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Dreux KM, Tschumper GS. Examination of the structures, energetics, and vibrational frequencies of small sulfur‐containing prototypical dimers, (H
2
S)
2
and H
2
O/H
2
S. J Comput Chem 2018; 40:229-236. [DOI: 10.1002/jcc.25578] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2018] [Revised: 08/13/2018] [Accepted: 08/13/2018] [Indexed: 11/08/2022]
Affiliation(s)
- Katelyn M. Dreux
- Department of Chemistry and Biochemistry University of Mississippi University Mississippi, 38677‐1848
| | - Gregory S. Tschumper
- Department of Chemistry and Biochemistry University of Mississippi University Mississippi, 38677‐1848
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3
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Floris SD, Talbot JJ, Wilkinson MJ, Herr JD, Steele RP. Quantum molecular motion in the mixed ion-radical complex, [(H 2O)(H 2S)] . Phys Chem Chem Phys 2016; 18:27450-27459. [PMID: 27711703 DOI: 10.1039/c6cp05299a] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Abstract
The cation dimer of water and hydrogen sulfide, [(H2O)(H2S)]+, serves as a fundamental model for the oxidation chemistry of H2S. The known oxidative metabolism of H2S by biological species in sulfur-rich environments has motivated the study of the inherent properties of this benchmark complex, with possible mechanistic implications for modern water oxidation chemistry. The low-energy isomer of this open-shell ion is a proton-transferred (PT) structure, H3O+SH˙. An alternative PT structure, H3S+OH˙, and a hemibonded (HB) isomer, [H2O·SH2]+, are also stable isomers, placing this complex intermediate to known (H2O)2+ (PT) and (H2S)2+ (HB) limiting regimes. This intermediate character suggested the possibility of unique molecular motion, even in the vibrational ground state. Path integral molecular dynamics and anharmonic vibrational spectroscopy simulations have been performed in this study, in order to understand the inherent quantum molecular motion of this complex. The resulting structural distributions were found to deviate significantly from both classical and harmonic analyses, including the observation of large-amplitude anharmonic motion of the central proton and nearly free rotation of the terminal hydrogens. The predicted vibrational spectra are particularly unique and suggest characteristic signatures of the strong electronic interactions and anharmonic vibrational mode couplings in this radical cation.
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Affiliation(s)
- S D Floris
- Department of Chemistry and Henry Eyring Center for Theoretical Chemistry, University of Utah, Salt Lake City, UT, USA.
| | - J J Talbot
- Department of Chemistry and Henry Eyring Center for Theoretical Chemistry, University of Utah, Salt Lake City, UT, USA.
| | - M J Wilkinson
- Department of Chemistry and Henry Eyring Center for Theoretical Chemistry, University of Utah, Salt Lake City, UT, USA.
| | - J D Herr
- Department of Chemistry and Henry Eyring Center for Theoretical Chemistry, University of Utah, Salt Lake City, UT, USA.
| | - R P Steele
- Department of Chemistry and Henry Eyring Center for Theoretical Chemistry, University of Utah, Salt Lake City, UT, USA.
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4
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Li X, Li AY. Hemi bonds and noncovalent interactions in the cational systems (XH2P: SHY)+. Chem Phys Lett 2016. [DOI: 10.1016/j.cplett.2016.07.011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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5
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Substituent effects on the properties of the hemi-bonded complexes (XH2P···NH2Y)+ (X, Y=H, F, Cl, Br, NH2, CH3, OH). J Mol Model 2015; 22:1. [DOI: 10.1007/s00894-015-2876-x] [Citation(s) in RCA: 57] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2015] [Accepted: 11/22/2015] [Indexed: 11/26/2022]
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6
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Marín-Luna M, Alkorta I, Elguero J. A computational study on [(PH2X)2]·+ homodimers involving intermolecular two-center three-electron bonds. Struct Chem 2015. [DOI: 10.1007/s11224-015-0617-5] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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7
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Structures and stabilities of hemi-bonded vs proton-transferred isomers of dimer radical cation systems (XH 3 YH 3 ) + (X,Y = N, P, As). Chem Phys Lett 2015. [DOI: 10.1016/j.cplett.2014.11.033] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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8
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Alday B, Johnson R, Li J, Guo H. Hemibond complexes between H2S and free radicals (F, Cl, Br, and OH). Theor Chem Acc 2014. [DOI: 10.1007/s00214-014-1540-3] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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9
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Structures and stabilities of asymmetrical dimer radical cation systems (AH3–H2O)+ (A=N, P, As). Struct Chem 2014. [DOI: 10.1007/s11224-014-0472-9] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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10
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11
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Hydrogen bonding interaction between HO2 radical and selected organic acids, RCOOH (R=CH3, H, Cl and F). Chem Phys Lett 2013. [DOI: 10.1016/j.cplett.2013.08.025] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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12
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Do H, Besley NA. Proton transfer or hemibonding? The structure and stability of radical cation clusters. Phys Chem Chem Phys 2013; 15:16214-9. [DOI: 10.1039/c3cp52922c] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
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13
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Joshi R, Ghanty TK, Mukherjee T, Naumov S. Hydrogen Bonding in Neutral and Cation Dimers of H2Se with H2O, H2S, and H2Se. J Phys Chem A 2012; 116:11965-72. [DOI: 10.1021/jp308735j] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
| | | | | | - Sergej Naumov
- Department
of Interface Physics, University of Leipzig, Linnestrasse 5, D-04103 Leipzig,
Germany
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14
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JALBOUT ABRAHAMF. HYDROGEN SULFIDE STABILIZATION OF AN EXCESS ELECTRON ON MOLECULAR SURFACES. JOURNAL OF THEORETICAL & COMPUTATIONAL CHEMISTRY 2011. [DOI: 10.1142/s0219633608003666] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
In the present work, a set of cyclooctane and cyclohexane molecular surfaces were used to solvate excess electrons using hydrogen sulfide ( H 2 S ). The compounds implemented have been constructed with OH groups on one side of the hydrocarbon surfaces and hydrogen atoms on the opposite side. These OH groups increased the dipole moment of systems. Simultaneously the hydrogen atoms on the opposite side of the surface for a pocket of positive charge that can attach excess electrons via dipole-bound states. The solvated anions formed between the molecular surfaces and hydrogen sulfide are stable with respect to vertical electron detachment (VDE). The effect of basis sets was also addressed in the context of VDE calculations.
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Affiliation(s)
- ABRAHAM F. JALBOUT
- Instituto de Química, Universidad Nacional Autónoma de México, México D.F., Mexico
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15
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Kritayakornupong C, Vchirawongkwin V, Rode BM. Determination of Structure and Dynamics of the Solvated Bisulfide (HS−) Ion by ab Initio QMCF Molecular Dynamics. J Phys Chem B 2010; 114:12883-7. [DOI: 10.1021/jp104856q] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Chinapong Kritayakornupong
- Department of Chemistry, Faculty of Science, King Mongkut’s University of Technology Thonburi, Bangkok, 10140 Thailand, Department of Chemistry, Faculty of Science, Chulalongkorn University, Bangkok, 10330 Thailand, and Theoretical Chemistry Division, Institute of General, Inorganic and Theoretical Chemistry, University of Innsbruck, Innrain 52a, A-6020 Innsbruck, Austria
| | - Viwat Vchirawongkwin
- Department of Chemistry, Faculty of Science, King Mongkut’s University of Technology Thonburi, Bangkok, 10140 Thailand, Department of Chemistry, Faculty of Science, Chulalongkorn University, Bangkok, 10330 Thailand, and Theoretical Chemistry Division, Institute of General, Inorganic and Theoretical Chemistry, University of Innsbruck, Innrain 52a, A-6020 Innsbruck, Austria
| | - Bernd M. Rode
- Department of Chemistry, Faculty of Science, King Mongkut’s University of Technology Thonburi, Bangkok, 10140 Thailand, Department of Chemistry, Faculty of Science, Chulalongkorn University, Bangkok, 10330 Thailand, and Theoretical Chemistry Division, Institute of General, Inorganic and Theoretical Chemistry, University of Innsbruck, Innrain 52a, A-6020 Innsbruck, Austria
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16
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Becerra R, Boganov SE, Egorov MP, Faustov VI, Krylova IV, Nefedov OM, Promyslov VM, Walsh R. Gas-Phase Kinetics of Chlorosilylene Reactions. I. ClSiH + Me3SiH: Absolute Rate Measurements and Theoretical Calculations for Prototype Si−H Insertion Reactions. J Phys Chem A 2009; 113:5512-8. [DOI: 10.1021/jp901446t] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Affiliation(s)
- Rosa Becerra
- Instituto de Quimica-Fisica “Rocasolano”, C.S.I.C., C/Serrano 119, 28006 Madrid, Spain
| | - Sergey E. Boganov
- N.D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Leninsky Prospekt 47, 119991 Moscow, Russian Federation
| | - Mikhail P. Egorov
- N.D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Leninsky Prospekt 47, 119991 Moscow, Russian Federation
| | - Valery I. Faustov
- N.D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Leninsky Prospekt 47, 119991 Moscow, Russian Federation
| | - Irina V. Krylova
- N.D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Leninsky Prospekt 47, 119991 Moscow, Russian Federation
| | - Oleg M. Nefedov
- N.D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Leninsky Prospekt 47, 119991 Moscow, Russian Federation
| | - Vladimir M. Promyslov
- N.D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Leninsky Prospekt 47, 119991 Moscow, Russian Federation
| | - Robin Walsh
- Department of Chemistry, University of Reading, Whiteknights, P.O. Box 224, Reading RG6 6AD, United Kingdom
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18
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Maeda S, Ohno K. Microsolvation of Hydrogen Sulfide: Exploration of H2S·(H2O)n and SH-·H3O+·(H2O)n-1 (n = 5−7) Cluster Structures on Ab Initio Potential Energy Surfaces by the Scaled Hypersphere Search Method. J Phys Chem A 2008; 112:2962-8. [DOI: 10.1021/jp710494n] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Satoshi Maeda
- Department of Chemistry, Graduate School of Science, Tohoku University, Aramaki, Aoba-ku, Sendai 980-8578, Japan
| | - Koichi Ohno
- Department of Chemistry, Graduate School of Science, Tohoku University, Aramaki, Aoba-ku, Sendai 980-8578, Japan
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19
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Joshi R, Ghanty TK, Naumov S, Mukherjee T. Ionized State of Hydroperoxy Radical−Water Hydrogen-Bonded Complex: (HO2−H2O)+. J Phys Chem A 2007; 111:13590-4. [PMID: 18052134 DOI: 10.1021/jp074194h] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Ravi Joshi
- Radiation and Photochemistry Division, and Theoretical Chemistry Section, Chemistry Group, Bhabha Atomic Research Centre, Mumbai 400 085, India, and Leibniz Institute of Surface Modification, Permoserstrasse 15, 04303 Leipzig, Germany
| | - Tapan K. Ghanty
- Radiation and Photochemistry Division, and Theoretical Chemistry Section, Chemistry Group, Bhabha Atomic Research Centre, Mumbai 400 085, India, and Leibniz Institute of Surface Modification, Permoserstrasse 15, 04303 Leipzig, Germany
| | - Sergej Naumov
- Radiation and Photochemistry Division, and Theoretical Chemistry Section, Chemistry Group, Bhabha Atomic Research Centre, Mumbai 400 085, India, and Leibniz Institute of Surface Modification, Permoserstrasse 15, 04303 Leipzig, Germany
| | - Tulsi Mukherjee
- Radiation and Photochemistry Division, and Theoretical Chemistry Section, Chemistry Group, Bhabha Atomic Research Centre, Mumbai 400 085, India, and Leibniz Institute of Surface Modification, Permoserstrasse 15, 04303 Leipzig, Germany
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