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Verhoeven J, Deraet X, Pande V, Sun W, Alonso M, De Proft F, Meerpoel L, Thuring JW, Verniest G. Synthesis and Reactivity of Spirocarbocycles as Scaffolds for Nucleoside Analogues. J Org Chem 2020; 85:14989-15005. [PMID: 33196210 DOI: 10.1021/acs.joc.0c01825] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
A novel class of substituted spiro[3.4]octanes can be accessed via a [2 + 2]-cycloaddition of dichloroketene on a readily prepared exo-methylene cyclopentane building block. This reaction sequence was found to be robust on a multigram scale and afforded a central spirocyclobutanone scaffold for carbocyclic nucleosides. The reactivity of this constrained building block was evaluated and compared to the corresponding 4'-spirocyclic furanose analogues. Density functional theory calculations were performed to support the observed selectivity in the carbonyl reduction of spirocyclobutanone building blocks. Starting from novel spirocyclic intermediates, we exemplified the preparation of an undescribed class of carbocyclic nucleoside analogues and provided a proof of concept for application as inhibitors for the protein methyltransferase target PRMT5.
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Affiliation(s)
- Jonas Verhoeven
- Research Group of Organic Chemistry (ORGC), Department of Chemistry and Department of Bio-Engineering Sciences, Faculty of Science and Bio-Engineering Sciences, Vrije Universiteit Brussel (VUB) Pleinlaan 2, 1050 Brussels, Belgium.,Janssen Pharmaceutica NV Turnhoutseweg 30, 2340 Beerse, Belgium
| | - Xavier Deraet
- Research Group of General Chemistry (ALGC), Vrije Universiteit Brussel (VUB), 1050 Brussels, Belgium
| | - Vineet Pande
- Janssen Pharmaceutica NV Turnhoutseweg 30, 2340 Beerse, Belgium
| | - Weimei Sun
- Janssen Pharmaceutica NV Turnhoutseweg 30, 2340 Beerse, Belgium
| | - Mercedes Alonso
- Research Group of General Chemistry (ALGC), Vrije Universiteit Brussel (VUB), 1050 Brussels, Belgium
| | - Frank De Proft
- Research Group of General Chemistry (ALGC), Vrije Universiteit Brussel (VUB), 1050 Brussels, Belgium
| | - Lieven Meerpoel
- Janssen Pharmaceutica NV Turnhoutseweg 30, 2340 Beerse, Belgium
| | | | - Guido Verniest
- Research Group of Organic Chemistry (ORGC), Department of Chemistry and Department of Bio-Engineering Sciences, Faculty of Science and Bio-Engineering Sciences, Vrije Universiteit Brussel (VUB) Pleinlaan 2, 1050 Brussels, Belgium.,Janssen Pharmaceutica NV Turnhoutseweg 30, 2340 Beerse, Belgium
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2
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Deraet X, Voets L, Van Lommel R, Verniest G, De Proft F, De Borggraeve W, Alonso M. Stereoselective Reductions of 3-Substituted Cyclobutanones: A Comparison between Experiment and Theory. J Org Chem 2020; 85:7803-7816. [PMID: 32441520 DOI: 10.1021/acs.joc.0c00464] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Abstract
The stereoselective reduction of carbonyls is of key importance in the total synthesis of natural products and in medicinal chemistry. Nevertheless, models for rationalizing the stereoselectivity of the hydride reductions of cyclobutanones toward cyclobutanols are largely lacking, unlike cyclohexanone reductions. In order to elucidate the factors that control the stereoselectivity of these reductions, we have investigated the effect of the reaction temperature, solvent, substituent, and type of reducing agent using a synergistic experimental-computational approach. On the experimental side, the hydride reduction of 3-substituted cyclobutanones was proven to be highly selective for the formation of cis alcohol (>90%), irrespective of the size of the hydride reagent. The pronounced selectivity can be further enhanced by lowering the reaction temperature or decreasing the solvent polarity. On the computational side, density functional theory and noncovalent interaction analysis reveal that torsional strain plays a major role in the preference for the antifacial hydride approach, consistent with the Felkin-Anh model. In the presence of the benzyloxy substituent, the high selectivity for the cis isomer is also driven by repulsive electrostatic interactions in the case of a syn-facial hydride attack. The computed cis/trans ratios are in good agreement with the experimental ones and thus show the potential of computational chemistry for predicting and rationalizing the stereoselectivity of hydride reductions of cyclobutanones.
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Affiliation(s)
- Xavier Deraet
- Department of General Chemistry (ALGC), Vrije Universiteit Brussel (VUB), Pleinlaan 2, Elsene, Brussels 1050, Belgium
| | - Lauren Voets
- Molecular Design and Synthesis, Department of Chemistry, KU Leuven, Celestijnenlaan 200F Leuven Chem&Tech, Box 2404, Leuven 3001, Belgium
| | - Ruben Van Lommel
- Department of General Chemistry (ALGC), Vrije Universiteit Brussel (VUB), Pleinlaan 2, Elsene, Brussels 1050, Belgium.,Molecular Design and Synthesis, Department of Chemistry, KU Leuven, Celestijnenlaan 200F Leuven Chem&Tech, Box 2404, Leuven 3001, Belgium
| | - Guido Verniest
- Research Group of Organic Chemistry (ORGC), Departments of Bio-engineering Sciences and Chemistry, Vrije Universiteit Brussel (VUB), Pleinlaan 2, Elsene, Brussels 1050, Belgium
| | - Frank De Proft
- Department of General Chemistry (ALGC), Vrije Universiteit Brussel (VUB), Pleinlaan 2, Elsene, Brussels 1050, Belgium
| | - Wim De Borggraeve
- Molecular Design and Synthesis, Department of Chemistry, KU Leuven, Celestijnenlaan 200F Leuven Chem&Tech, Box 2404, Leuven 3001, Belgium
| | - Mercedes Alonso
- Department of General Chemistry (ALGC), Vrije Universiteit Brussel (VUB), Pleinlaan 2, Elsene, Brussels 1050, Belgium
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3
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Romero AH. Influence of heteroelement on dipole and quadrupole moments of a series of three-membered rings containing a second, third, fourth, or fifth-row atom: a theoretical investigation. Struct Chem 2019. [DOI: 10.1007/s11224-018-1190-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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4
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Romero AH. Calculations of molecular multipole electric moments of a series of exo-insaturated four-membered heterocycles, Y = CCH 2CH 2X. Mol Phys 2017. [DOI: 10.1080/00268976.2017.1333646] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Affiliation(s)
- Angel H. Romero
- Cátedra de Química General, Facultad de Farmacia, Universidad Central de Venezuela, Apartado, Venezuela
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5
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V.-T. Mai T, Duong MV, Le XT, Huynh LK. Ab initio dynamics of unimolecular decomposition of β-propiolactone and β-propiolactam. Chem Phys Lett 2017. [DOI: 10.1016/j.cplett.2017.08.033] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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6
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Romero AH, Squitieri E. Potential use of small basis set on the calculations of electronic properties of some four-membered heterocycles: a conformational study. Mol Phys 2016. [DOI: 10.1080/00268976.2016.1256506] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Affiliation(s)
- Angel H. Romero
- Laboratorio de Química Computacional y Teórica, Escuela de Química, Facultad de Ciencias, Universidad Central de Venezuela, Caracas, Venezuela
| | - Emilio Squitieri
- Laboratorio de Química Computacional y Teórica, Escuela de Química, Facultad de Ciencias, Universidad Central de Venezuela, Caracas, Venezuela
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7
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Romero AH, Squitieri E. Effect of heterosubstituent and ring puckering angle on linear and nonlinear properties of exo-insaturated four-membered heterocycles, Y=CCH 2CH 2X: a comparative ab initio, DFT and semi-empirical study. Mol Phys 2016. [DOI: 10.1080/00268976.2016.1193243] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
Affiliation(s)
- Angel H. Romero
- Laboratorio de Química Computacional y Teórica, Facultad de Ciencias, Escuela de Química, Universidad Central de Venezuela, Caracas, Venezuela
| | - Emilio Squitieri
- Laboratorio de Química Computacional y Teórica, Facultad de Ciencias, Escuela de Química, Universidad Central de Venezuela, Caracas, Venezuela
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Wright EM, Warner BJ, Foreman HE, McCunn LR, Urness KN. Pyrolysis Reactions of 3-Oxetanone. J Phys Chem A 2015; 119:7966-72. [PMID: 26103787 DOI: 10.1021/acs.jpca.5b04565] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The pyrolysis products of gas-phase 3-oxetanone were identified via matrix-isolation Fourier transform infrared spectroscopy and photoionization mass spectrometry. Pyrolysis was conducted in a hyperthermal nozzle at temperatures from 100 to 1200 °C with the dissociation onset observed at ∼600 °C. The ring strain in the cyclic structure of 3-oxetanone causes the molecule to decompose at relatively low temperatures. Previously, only one dissociation channel, producing formaldehyde and ketene, was considered as significant in photolysis. This study presents the first experimental measurements of the thermal decomposition of 3-oxetanone demonstrating an additional dissociation channel that forms ethylene oxide and carbon monoxide. Major products include formaldehyde, ketene, carbon monoxide, ethylene oxide, ethylene, and methyl radical. The first four products stem from initial decomposition of 3-oxetanone, while the additional products, ethylene and methyl radical, are believed to be due to further reactions involving ethylene oxide.
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Affiliation(s)
- Emily M Wright
- Department of Chemistry, Marshall University, One John Marshall Drive, Huntington, West Virginia 25755, United States.,Department of Mechanical Engineering, University of Colorado, Boulder, Colorado 80309, United States
| | - Brian J Warner
- Department of Chemistry, Marshall University, One John Marshall Drive, Huntington, West Virginia 25755, United States.,Department of Mechanical Engineering, University of Colorado, Boulder, Colorado 80309, United States
| | - Hannah E Foreman
- Department of Chemistry, Marshall University, One John Marshall Drive, Huntington, West Virginia 25755, United States.,Department of Mechanical Engineering, University of Colorado, Boulder, Colorado 80309, United States
| | - Laura R McCunn
- Department of Chemistry, Marshall University, One John Marshall Drive, Huntington, West Virginia 25755, United States.,Department of Mechanical Engineering, University of Colorado, Boulder, Colorado 80309, United States
| | - Kimberly N Urness
- Department of Chemistry, Marshall University, One John Marshall Drive, Huntington, West Virginia 25755, United States.,Department of Mechanical Engineering, University of Colorado, Boulder, Colorado 80309, United States
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Carroccia L, Degennaro L, Romanazzi G, Cuocci C, Pisano L, Luisi R. Straightforward access to 4-membered sulfurated heterocycles: introducing a strategy for the single and double functionalization of thietane 1-oxide. Org Biomol Chem 2014; 12:2180-4. [DOI: 10.1039/c4ob00173g] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A strategy for the stereoselective functionalization of thietane 1-oxide has been developed by using the corresponding organometallic intermediates that reacted with electrophiles leaving intact the 4-membered ring.
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Affiliation(s)
- Laura Carroccia
- Department of Pharmacy – Drug Sciences
- University of Bari “A. Moro”
- Bari 70125 – I, Italy
| | - Leonardo Degennaro
- Department of Pharmacy – Drug Sciences
- University of Bari “A. Moro”
- Bari 70125 – I, Italy
| | | | - Corrado Cuocci
- Istituto di Cristallografia (IC-CNR)
- 70125 Bari – I, Italy
| | - Luisa Pisano
- Department of Chemistry and Pharmacy
- University of Sassari
- 07100 Sassari – I, Italy
| | - Renzo Luisi
- Department of Pharmacy – Drug Sciences
- University of Bari “A. Moro”
- Bari 70125 – I, Italy
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10
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Chen Z, van Wijngaarden J. Synchrotron-Based Far-Infrared Spectroscopic Investigation and ab Initio Calculations of 3-Oxetanone: Observation and Analysis of the ν7 Band and the Coriolis Coupled ν16 and ν20 Bands. J Phys Chem A 2012; 116:9490-6. [DOI: 10.1021/jp3076673] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Ziqiu Chen
- Department of Chemistry, University of Manitoba, Winnipeg Manitoba,
R3T 2N2
Canada
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11
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Liu J, Ge Q. Hydrogen Interaction in Ti-Doped LiBH4 for Hydrogen Storage: A Density Functional Analysis. J Chem Theory Comput 2009; 5:3079-87. [DOI: 10.1021/ct900287r] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Affiliation(s)
- Jianjun Liu
- Department of Chemistry and Biochemistry, Southern Illinois University, Carbondale, Illinois 62901
| | - Qingfeng Ge
- Department of Chemistry and Biochemistry, Southern Illinois University, Carbondale, Illinois 62901
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12
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Liu J, Han Y, Ge Q. Effect of Doped Transition Metal on Reversible Hydrogen Release/Uptake from NaAlH4. Chemistry 2009; 15:1685-95. [DOI: 10.1002/chem.200801045] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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13
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Verstraelen T, Van Houteghem M, Van Speybroeck V, Waroquier M. MD-TRACKS: A Productive Solution for the Advanced Analysis of Molecular Dynamics and Monte Carlo simulations. J Chem Inf Model 2008; 48:2414-24. [DOI: 10.1021/ci800233y] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Toon Verstraelen
- Center for Molecular Modeling, Ghent University, Proeftuinstraat 86, 9000 Ghent, Belgium
| | - Marc Van Houteghem
- Center for Molecular Modeling, Ghent University, Proeftuinstraat 86, 9000 Ghent, Belgium
| | | | - Michel Waroquier
- Center for Molecular Modeling, Ghent University, Proeftuinstraat 86, 9000 Ghent, Belgium
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14
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Brandi A, Cicchi S, Cordero FM. Novel Syntheses of Azetidines and Azetidinones. Chem Rev 2008; 108:3988-4035. [DOI: 10.1021/cr800325e] [Citation(s) in RCA: 395] [Impact Index Per Article: 23.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Affiliation(s)
- Alberto Brandi
- Dipartimento di Chimica Organica “Ugo Schiff”, Laboratorio di Progettazione, Sintesi e Studio di Eterocicli Biologicamente Attivi - HeteroBioLab, Università degli Studi di Firenze, via della Lastruccia 13, 50019 Sesto F.no (FI), Italy
| | - Stefano Cicchi
- Dipartimento di Chimica Organica “Ugo Schiff”, Laboratorio di Progettazione, Sintesi e Studio di Eterocicli Biologicamente Attivi - HeteroBioLab, Università degli Studi di Firenze, via della Lastruccia 13, 50019 Sesto F.no (FI), Italy
| | - Franca M. Cordero
- Dipartimento di Chimica Organica “Ugo Schiff”, Laboratorio di Progettazione, Sintesi e Studio di Eterocicli Biologicamente Attivi - HeteroBioLab, Università degli Studi di Firenze, via della Lastruccia 13, 50019 Sesto F.no (FI), Italy
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Mangelinckx S, Speybroeck VV, Vansteenkiste P, Waroquier M, Kimpe ND. Experimental and Computational Study of the Conrotatory Ring Opening of Various 3-Chloro-2-azetines. J Org Chem 2008; 73:5481-8. [DOI: 10.1021/jo800522b] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Sven Mangelinckx
- Department of Organic Chemistry, Faculty of Bioscience Engineering, Ghent University, Coupure Links 653, B-9000 Ghent, Belgium, and Center for Molecular Modeling, Ghent University, Proeftuinstraat 86, B-9000 Ghent, Belgium
| | - Veronique Van Speybroeck
- Department of Organic Chemistry, Faculty of Bioscience Engineering, Ghent University, Coupure Links 653, B-9000 Ghent, Belgium, and Center for Molecular Modeling, Ghent University, Proeftuinstraat 86, B-9000 Ghent, Belgium
| | - Peter Vansteenkiste
- Department of Organic Chemistry, Faculty of Bioscience Engineering, Ghent University, Coupure Links 653, B-9000 Ghent, Belgium, and Center for Molecular Modeling, Ghent University, Proeftuinstraat 86, B-9000 Ghent, Belgium
| | - Michel Waroquier
- Department of Organic Chemistry, Faculty of Bioscience Engineering, Ghent University, Coupure Links 653, B-9000 Ghent, Belgium, and Center for Molecular Modeling, Ghent University, Proeftuinstraat 86, B-9000 Ghent, Belgium
| | - Norbert De Kimpe
- Department of Organic Chemistry, Faculty of Bioscience Engineering, Ghent University, Coupure Links 653, B-9000 Ghent, Belgium, and Center for Molecular Modeling, Ghent University, Proeftuinstraat 86, B-9000 Ghent, Belgium
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Mucsi Z, Hermecz I, Viskolcz B, Csizmadia IG, Keglevich G. The influence of exocyclic phosphorous substituents on the intrinsic stability of four-membered heterophosphetes: a theoretical study. Tetrahedron 2008. [DOI: 10.1016/j.tet.2007.11.094] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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