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Gleeson R, Aggelund PA, Østergaard FC, Schaltz KF, Sauer SPA. Exploring Alternate Methods for the Calculation of High-Level Vibrational Corrections of NMR Spin-Spin Coupling Constants. J Chem Theory Comput 2024. [PMID: 38299500 DOI: 10.1021/acs.jctc.3c01223] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2024]
Abstract
Traditional nuclear magnetic resonance (NMR) calculations typically treat systems with a Born-Oppenheimer-derived electronic wave function that is solved for a fixed nuclear geometry. One can numerically account for this neglected nuclear motion by averaging over property values for all nuclear geometries with a vibrational wave function and adding this expectation value as a correction to an equilibrium geometry property value. Presented are benchmark coupled-cluster singles and doubles (CCSD) vibrational corrections to spin-spin coupling constants (SSCCs) computed at the level of vibrational second-order perturbation theory (VPT2) using the vibrational averaging driver of the CFOUR program. As CCSD calculations of vibrational corrections are very costly, cheaper electronic structure methods are explored via a newly developed Python vibrational averaging program within the Dalton Project. Namely, results obtained with the second-order polarization propagator approximation (SOPPA) and density functional theory (DFT) with the B3LYP and PBE0 exchange-correlation functionals are compared to the benchmark CCSD//CCSD(T) and experimental values. CCSD//CCSD(T) corrections are also combined with literature CC3 equilibrium geometry values to form the highest-order vibrationally corrected values available (i.e., CC3//CCSD(T) + CCSD//CCSD(T)). CCSD//CCSD(T) statistics showed favorable statistics in comparison to experimental values, albeit at an unfavorably high computational cost. A cheaper CCSD//CCSD(T) + B3LYP method showed quite similar mean absolute deviation (MAD) values as CCSD//CCSD(T), concluding that CCSD//CCSD(T) + B3LYP is optimal in terms of cost and accuracy. With reference to experimental values, a vibrational correction was not worth the cost for all of the other methods tested. Finally, deviation statistics showed that CC3//CCSD(T) + CCSD//CCSD(T) vibrational-corrected equilibrium values deteriorated in comparison to CCSD//CCSD(T) attributed to the use of a smaller basis set or lack of solvation effects for the CC3 equilibrium calculations.
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Affiliation(s)
- Ronan Gleeson
- Department of Chemistry, University of Copenhagen, 2100 Copenhagen, Denmark
| | - Patrick A Aggelund
- Department of Chemistry, University of Copenhagen, 2100 Copenhagen, Denmark
| | | | - Kasper F Schaltz
- Department of Chemistry, University of Copenhagen, 2100 Copenhagen, Denmark
| | - Stephan P A Sauer
- Department of Chemistry, University of Copenhagen, 2100 Copenhagen, Denmark
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2
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Schenberg LA, Ducati LC, Autschbach J. Inquiring 199Hg NMR Parameters by Combining Ab Initio Molecular Dynamics and Relativistic NMR Calculations. Inorg Chem 2024; 63:2082-2089. [PMID: 38207278 DOI: 10.1021/acs.inorgchem.3c03878] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2024]
Abstract
Ab initio molecular dynamics (AIMD) sampling followed by relativistic density functional theory (DFT) 199Hg NMR calculations were performed for Hg organometallic complexes in water, dimethyl sulfoxide, and chloroform. The spin-orbit coupling, a relativistic effect, is a key factor for predicting δ(Hg) and 1J(Hg-C) accurately, in conjunction with a dynamic treatment of the systems. Good agreement between the theoretical and experimental results is reached by adopting implicit (based on a continuum model) and explicit (solvent molecules treated quantum mechanically) solvation models. Broader trends appearing in the experimental data available in the literature are reproduced by the calculations, and therefore, quantum chemistry is able to assist in the assignment and interpretation of 199Hg NMR data. Less pronounced trends, such as changes in the 199Hg chemical shift in different systems with the same atom types bound to Hg, are too weak to be predicted reliably by the current state-of-the-art theoretical methods based on AIMD sampling and relativistic DFT with hybrid functionals for NMR calculations.
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Affiliation(s)
- Leonardo Araujo Schenberg
- Department of Fundamental Chemistry, Institute of Chemistry University of Sao Paulo, Sao Paulo, Sao Paulo 05508-000, Brazil
| | - Lucas Colucci Ducati
- Department of Fundamental Chemistry, Institute of Chemistry University of Sao Paulo, Sao Paulo, Sao Paulo 05508-000, Brazil
| | - Jochen Autschbach
- Department of Chemistry, University at Buffalo State University of New York, Buffalo, New York 14260-3000, United States
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Rusakova IL, Rusakov YY, Krivdin LB. Computational 199 Hg NMR. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2022; 60:929-953. [PMID: 35737297 DOI: 10.1002/mrc.5296] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/14/2022] [Revised: 06/20/2022] [Accepted: 06/21/2022] [Indexed: 06/15/2023]
Abstract
Theoretical background and fundamental results dealing with the computation of mercury chemical shifts and spin-spin coupling constants are reviewed with a special emphasis on their stereochemical behavior and applications.
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Affiliation(s)
- Irina L Rusakova
- A.E. Favorsky Irkutsk Institute of Chemistry, Siberian Branch of the Russian Academy of Sciences, Irkutsk, Russia
| | - Yuriy Yu Rusakov
- A.E. Favorsky Irkutsk Institute of Chemistry, Siberian Branch of the Russian Academy of Sciences, Irkutsk, Russia
| | - Leonid B Krivdin
- A.E. Favorsky Irkutsk Institute of Chemistry, Siberian Branch of the Russian Academy of Sciences, Irkutsk, Russia
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Krivdin LB. Computational NMR of heavy nuclei involving 109Ag, 113Cd, 119Sn, 125Te, 195Pt, 199Hg, 205Tl, and 207Pb. RUSSIAN CHEMICAL REVIEWS 2021. [DOI: 10.1070/rcr4976] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Faber R, Kaminsky J, Sauer SPA. Rovibrational and Temperature Effects in Theoretical Studies of NMR Parameters. GAS PHASE NMR 2016. [DOI: 10.1039/9781782623816-00218] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
The demand for high precision calculations of NMR shieldings (or their related values, chemical shifts δ) and spin–spin coupling constants facilitating and supporting detailed interpretations of NMR spectra increases hand in hand with the development of computational techniques and hardware resources. Highly sophisticated calculations including even relativistic effects are nowadays possible for these properties. However, NMR parameters depend not only on molecular structure and environment but also on molecular flexibility and temperature and the apparent success of theoretical predictions for molecular equilibrium geometries creates a demand for zero-point vibrational and temperature corrections. In this chapter we describe briefly the theory behind rovibrational corrections and review then some important contributions to this field.
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Affiliation(s)
- Rasmus Faber
- Department of Chemistry, University of Copenhagen Universitetsparken 5 DK-2100 Copenhagen Ø Denmark
| | - Jakub Kaminsky
- Department of Molecular Spectroscopy, Institute of Organic Chemistry and Biochemistry 166 10 Prague Czech Republic
| | - Stephan P. A. Sauer
- Department of Chemistry, University of Copenhagen Universitetsparken 5 DK-2100 Copenhagen Ø Denmark
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6
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Flórez E, Maldonado AF, Aucar GA, David J, Restrepo A. Microsolvation of methylmercury: structures, energies, bonding and NMR constants (199Hg,13C and17O). Phys Chem Chem Phys 2016; 18:1537-50. [DOI: 10.1039/c5cp04826e] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Hartree–Fock (HF) and second order perturbation theory (MP2) calculations within the scalar and full relativistic frames were carried out in order to determine the equilibrium geometries and interaction energies between cationic methylmercury (CH3Hg+) and up to three water molecules.
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Affiliation(s)
- Edison Flórez
- Instituto de Química
- Universidad de Antioquia UdeA
- Medellín
- Colombia
| | - Alejandro F. Maldonado
- Physics Department
- Natural and Exact Science Faculty
- Northeastern University of Argentina and Institute of Modelling and Innovation on Technology
- IMIT
- Corrientes
| | - Gustavo A. Aucar
- Physics Department
- Natural and Exact Science Faculty
- Northeastern University of Argentina and Institute of Modelling and Innovation on Technology
- IMIT
- Corrientes
| | - Jorge David
- Departamento de Ciencias Físicas
- Universidad EAFIT
- Medellín
- Colombia
| | - Albeiro Restrepo
- Instituto de Química
- Universidad de Antioquia UdeA
- Medellín
- Colombia
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Bowers EV, Murphy GS, Till SN, VandenBussche CJ, Yaroschak MM, Pike RD, Butcher RJ, Bebout DC. Bis-tetradentate complexes of Cd(II) and Hg(II) with N8 coordination: structural and NMR comparisons. Dalton Trans 2014; 43:16475-85. [PMID: 25250538 DOI: 10.1039/c4dt02435d] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Tripodal N4 ligands tris[(1-methylimidazol-2-yl)methyl]amine (L1), bis[(1-methylimidazol-2-yl)methyl][(2-pyridyl)methyl]amine (L2) and [(1-methylimidazol-2-yl)methyl]-bis-[(2-pyridyl)methyl]amine (L3) were used to prepare five new [ML2](ClO4)2 (M = Cd(II), Hg(II)) complexes. All complexes had N8 metal coordination and a trans-bicapped octahedral structure as determined by X-ray crystallography. Metal-nitrogen bond distances generally decreased in the order M-Namine > M-Npyridyl > M-Nimidazoyl, and the perchlorates were well separated from the metal ions. Variable temperature solution state (1)H NMR spectroscopy revealed conditions for slow intramolecular reorganization were more readily accessible for the Cd(II) complexes than for the Hg(II) complexes. Both protons of imidazoyl ring ligand components had large, comparable J((199)Hg(1)H) despite sizable differences in nuclear separation.
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Affiliation(s)
- Edith V Bowers
- The College of William & Mary, Department of Chemistry, Williamsburg, VA, USA.
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Kauch M, Pecul M. What factors influence the metal-proton spin-spin coupling constants in mercury- and cadmium-substutited rubredoxin? J Phys Chem A 2014; 118:4471-9. [PMID: 24884758 DOI: 10.1021/jp501888c] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The indirect metal-proton spin-spin coupling constants between protons in cysteine groups and the mercury or cadmium nucleus have been calculated for a small model of Me-rubredoxin complex (Me = Cd, Hg) by means of density functional theory with zeroth-order regular approximation Hamiltonian (DFT-ZORA). The calculated spin-spin coupling constants, in spite of the moderate size of the model system, are in good agreement with the values measured in NMR experiment, which are in the 0.29-0.56 Hz range for the Cd complex and in the 0.57-2.20 Hz range for the Hg complex. The robustness of the chosen method has been verified by calculations with a number of different exchange-correlation functionals and basis sets. Additionally, it has been shown that the short- and long-distance metal-proton coupling constants are affected mainly by the values of the metal-proton distance and the H-N-C-C dihedral angle.
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Affiliation(s)
- Małgorzata Kauch
- Faculty of Chemistry, University of Warsaw , Pasteura 1, 02-093 Warszawa, Poland
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Alkan F, Dybowski C. Calculation of chemical-shift tensors of heavy nuclei: a DFT/ZORA investigation of 199Hg chemical-shift tensors in solids, and the effects of cluster size and electronic-state approximations. Phys Chem Chem Phys 2014; 16:14298-308. [DOI: 10.1039/c4cp01682c] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A ZORA/DFT investigation of the NMR chemical shielding of a suite of 199Hg-containing solid materials shows the importance of calculations with the molecular-cluster method.
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Affiliation(s)
- Fahri Alkan
- Department of Chemistry and Biochemistry
- University of Delaware
- Newark, USA
| | - C. Dybowski
- Department of Chemistry and Biochemistry
- University of Delaware
- Newark, USA
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Autschbach J. The role of the exchange-correlation response kernel and scaling corrections in relativistic density functional nuclear magnetic shielding calculations with the zeroth-order regular approximation. Mol Phys 2013. [DOI: 10.1080/00268976.2013.796415] [Citation(s) in RCA: 46] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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11
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Autschbach J. Relativistic Effects on NMR Parameters. SCIENCE AND TECHNOLOGY OF ATOMIC, MOLECULAR, CONDENSED MATTER & BIOLOGICAL SYSTEMS 2013. [DOI: 10.1016/b978-0-444-59411-2.00004-6] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
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12
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Wodyński A, Repiský M, Pecul M. A comparison of two-component and four-component approaches for calculations of spin-spin coupling constants and NMR shielding constants of transition metal cyanides. J Chem Phys 2012; 137:014311. [DOI: 10.1063/1.4730944] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Kauch M, Pecul M. Spin-Spin Artificial DNA Intercalated with Silver Cations: Theoretical Prediction. Chemphyschem 2012; 13:1332-8. [DOI: 10.1002/cphc.201100846] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2011] [Revised: 01/20/2012] [Indexed: 11/07/2022]
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14
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Sutter K, Truflandier LA, Autschbach J. NMR J-coupling constants in cisplatin derivatives studied by molecular dynamics and relativistic DFT. Chemphyschem 2011; 12:1448-55. [PMID: 21381179 DOI: 10.1002/cphc.201000997] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2010] [Indexed: 11/06/2022]
Abstract
Solvent effects on J((195)Pt-(15)N) one-bond nuclear spin-spin coupling constants (J(PtN)) of cisplatin [cis-diamminedichloroplatinum(II)] and three cisplatin derivatives are investigated using a combination of density functional theory (DFT) based ab initio molecular dynamics (aiMD) and all-electron relativistic DFT NMR calculations employing the two-component relativistic zeroth-order regular approximation (ZORA). Good agreement with experiment is obtained when explicit solvent molecules are considered and when the computations are performed with a hybrid functional. Spin-orbit coupling causes only small effects on J(PtN) . Key factors contributing to the magnitude of coupling constants are elucidated, with the most significant being the presence of solvent as well as the quality of the density functional and basis set combination. The solvent effects are of the same magnitude as J(PtN) calculated for gas-phase geometries. However, the trends of J(PtN) among the complexes are already present in the gas phase. Results obtained with a continuum solvent model agree quite well with the aiMD results, provided that the Pt solvent-accessible radius is carefully chosen. The aiMD results support the existence of a partial hydrogen-bond-like inverse-hydration-type interaction affording a weak (1)J(Pt⋅⋅⋅H(w)) coupling between the complexes and the coordinating water molecule.
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Affiliation(s)
- Kiplangat Sutter
- Department of Chemistry, University at Buffalo, State University of New York, Buffalo, NY 14260-3000, USA
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15
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Truflandier LA, Brendler E, Wagler J, Autschbach J. 29
Si DFT/NMR Observation of Spin–Orbit Effect in Metallasilatrane Sheds Some Light on the Strength of the Metal→Silicon Interaction. Angew Chem Int Ed Engl 2010; 50:255-9. [DOI: 10.1002/anie.201005431] [Citation(s) in RCA: 64] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Lionel A. Truflandier
- Department of Chemistry, 312 Natural Sciences Complex, State University of New York at Buffalo, Buffalo, NY 14260‐3000 (USA), Fax: (+1) 716‐645‐6963
| | - Erica Brendler
- Institut für Analytische Chemie, Technische Universität Bergakademie Freiberg, 09596 Freiberg (Germany)
| | - Jörg Wagler
- Institut für Anorganische Chemie, Technische Universität Bergakademie Freiberg, 09596 Freiberg (Germany)
| | - Jochen Autschbach
- Department of Chemistry, 312 Natural Sciences Complex, State University of New York at Buffalo, Buffalo, NY 14260‐3000 (USA), Fax: (+1) 716‐645‐6963
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Truflandier LA, Brendler E, Wagler J, Autschbach J. 29
Si DFT/NMR Observation of Spin–Orbit Effect in Metallasilatrane Sheds Some Light on the Strength of the Metal→Silicon Interaction. Angew Chem Int Ed Engl 2010. [DOI: 10.1002/ange.201005431] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Lionel A. Truflandier
- Department of Chemistry, 312 Natural Sciences Complex, State University of New York at Buffalo, Buffalo, NY 14260‐3000 (USA), Fax: (+1) 716‐645‐6963
| | - Erica Brendler
- Institut für Analytische Chemie, Technische Universität Bergakademie Freiberg, 09596 Freiberg (Germany)
| | - Jörg Wagler
- Institut für Anorganische Chemie, Technische Universität Bergakademie Freiberg, 09596 Freiberg (Germany)
| | - Jochen Autschbach
- Department of Chemistry, 312 Natural Sciences Complex, State University of New York at Buffalo, Buffalo, NY 14260‐3000 (USA), Fax: (+1) 716‐645‐6963
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Zheng S, Autschbach J. Modeling of heavy-atom-ligand NMR spin-spin coupling in solution: molecular dynamics study and natural bond orbital analysis of Hg-C coupling constants. Chemistry 2010; 17:161-73. [PMID: 21207613 DOI: 10.1002/chem.201001343] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2010] [Indexed: 11/11/2022]
Abstract
Ab initio molecular dynamics (MD) and relativistic density functional NMR methods were applied to calculate the one-bond Hg-C NMR indirect nuclear spin-spin coupling constants (J) of [Hg(CN)(2) ] and [CH(3) HgCl] in solution. The MD averages were obtained as J((199) Hg-(13) C)=3200 and 1575 Hz, respectively. The experimental Hg-C spin-spin coupling constants of [Hg(CN)(2) ] in methanol and [CH(3) HgCl] in DMSO are 3143 and 1674 Hz, respectively. To deal with solvent effects in the calculations, finite "droplet" models of the two systems were set up. Solvent effects in both systems lead to a strong increase of the Hg-C coupling constant. From a relativistic natural localized molecular orbital (NLMO) analysis, it was found that the degree of delocalization of the Hg 5d(σ) nonbonding orbital and of the HgC bonding orbital between the two coupled atoms, the nature of the trans Hg-C/Cl bonding orbital, and the s character of these orbitals, exhibit trends upon solvation of the complexes that, when combined, lead to the strong increase of J(Hg-C).
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Affiliation(s)
- Shaohui Zheng
- Department of Chemistry, University at Buffalo, State University of New York, Buffalo, NY 14260-3000, USA
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Relativistic Effects on Magnetic Resonance Parameters and Other Properties of Inorganic Molecules and Metal Complexes. ACTA ACUST UNITED AC 2010. [DOI: 10.1007/978-1-4020-9975-5_12] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/08/2023]
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Taylor R, Carver CT, Larsen RE, Dmitrenko O, Bai S, Dybowski C. Revisiting HgCl2: A solution- and solid-state 199Hg NMR and ZORA–DFT computational study. J Mol Struct 2009. [DOI: 10.1016/j.molstruc.2009.04.045] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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Autschbach J. Two-component relativistic hybrid density functional computations of nuclear spin-spin coupling tensors using Slater-type basis sets and density-fitting techniques. J Chem Phys 2008; 129:094105. [DOI: 10.1063/1.2969100] [Citation(s) in RCA: 61] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023] Open
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Autschbach J, Sterzel M. Molecular Dynamics Computational Study of the199Hg−199Hg NMR Spin−Spin Coupling Constants of [Hg−Hg−Hg]2+in SO2Solution. J Am Chem Soc 2007; 129:11093-9. [PMID: 17713908 DOI: 10.1021/ja073166+] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The isotropic one-bond and two-bond 199Hg-199Hg nuclear magnetic spin-spin coupling constants (J-couplings) of [Hg-Hg-Hg]2+ were calculated using density functional theory, the zeroth-order regular approximation (ZORA) to treat relativistic effects, and Born-Oppenheimer molecular dynamics (BOMD) including SO2 molecules explicitly for the description of solvent effects. The final BOMD average of 150 kHz for 1J (199Hg-199Hg) agrees well with the experimental spin-spin coupling of 140 kHz measured in liquid SO2, while computations not considering explicit solvation at the quantum-mechanical level yielded one-bond coupling constants between 230 and 260 kHz. The two-bond coupling is similarly strongly affected by solvent effects. An analysis of the BOMD data shows that the effect is mainly due to close contacts between the terminal Hg atoms of [Hg-Hg-Hg]2+ and the solvent's oxygen atoms. The results highlight the importance of solvent effects for the NMR parameter of heavy metals and demonstrate the usefulness of treating such solvent effects with the help of molecular dynamics-based averaging.
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Affiliation(s)
- Jochen Autschbach
- Department of Chemistry, State University of New York at Buffalo, Buffalo, New York 14260-3000, USA.
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