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Manna D, Lo R, Miriyala VM, Nachtigallová D, Trávníček Z, Hobza P. Impact of dielectric constant of solvent on the formation of transition metal-ammine complexes. J Comput Chem 2024; 45:204-209. [PMID: 37752737 DOI: 10.1002/jcc.27230] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2023] [Revised: 08/29/2023] [Accepted: 09/04/2023] [Indexed: 09/28/2023]
Abstract
The DFT-level computational investigations into Gibbs free energies (ΔG) demonstrate that as the dielectric constant of the solvent increases, the stabilities of [M(NH3 )n ]2+/3+ (n = 4, 6; M = selected 3d transition metals) complexes decrease. However, there is no observed correlation between the stability of the complex and the solvent donor number. Analysis of the charge transfer and Wiberg bond indices indicates a dative-bond character in all the complexes. The solvent effect assessed through solvation energy is determined by the change in the solvent accessible surface area (SASA) and the change in the charge distribution that occurs during complex formation. It has been observed that the SASA and charge transfer are different in the different coordination numbers, resulting in a variation in the solvent effect on complex stability in different solvents. This ultimately leads to a change between the relative stability of complexes with different coordination numbers while increasing the solvent polarity for a few complexes. Moreover, the findings indicate a direct relationship between ΔΔG (∆Gsolvent -∆Ggas ) and ΔEsolv , which enables the computation of ΔG for the compounds in a particular solvent using only ΔGgas and ΔEsolv . This approach is less computationally expensive.
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Affiliation(s)
- Debashree Manna
- Czech Academy of Sciences, Institute of Organic Chemistry and Biochemistry, Prague, Czech Republic
| | - Rabindranath Lo
- Czech Academy of Sciences, Institute of Organic Chemistry and Biochemistry, Prague, Czech Republic
- Regional Centre of Advanced Technologies and Materials, Czech Advanced Technology and Research Institute, Palacký University, Olomouc, Czech Republic
| | - Vijay Madhav Miriyala
- Czech Academy of Sciences, Institute of Organic Chemistry and Biochemistry, Prague, Czech Republic
- Regional Centre of Advanced Technologies and Materials, Czech Advanced Technology and Research Institute, Palacký University, Olomouc, Czech Republic
| | - Dana Nachtigallová
- Czech Academy of Sciences, Institute of Organic Chemistry and Biochemistry, Prague, Czech Republic
- IT4Innovations, VŠB-Technical University of Ostrava, Ostrava, Czech Republic
| | - Zdeněk Trávníček
- Regional Centre of Advanced Technologies and Materials, Czech Advanced Technology and Research Institute, Palacký University, Olomouc, Czech Republic
| | - Pavel Hobza
- Czech Academy of Sciences, Institute of Organic Chemistry and Biochemistry, Prague, Czech Republic
- IT4Innovations, VŠB-Technical University of Ostrava, Ostrava, Czech Republic
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2
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Ayarde-Henríquez L, Guerra C, Duque-Noreña M, Chamorro E. Revisiting the bonding evolution theory: a fresh perspective on the ammonia pyramidal inversion and bond dissociations in ethane and borazane. Phys Chem Chem Phys 2023; 25:27394-27408. [PMID: 37792471 DOI: 10.1039/d3cp03572g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/05/2023]
Abstract
This work offers a comprehensive and fresh perspective on the bonding evolution theory (BET) framework, originally proposed by Silvi and collaborators [X. Krokidis, S. Noury and B. Silvi, Characterization of elementary chemical processes by catastrophe theory, J. Phys. Chem. A, 1997, 101, 7277-7282]. By underscoring Thom's foundational work, we identify the parametric function characterizing bonding events along a reaction pathway through a three-step sequence to establish such association rigorously, namely: (a) computing the determinant of the Hessian matrix at all potentially degenerate critical points, (b) computing the relative distance between these points, and (c) assigning the unfolding based on these computations and considering the maximum number of critical points for each unfolding. In-depth examination of the ammonia inversion and the dissociation of ethane and ammonia borane molecules yields a striking discovery: no elliptic umbilic flag is detected along the reactive coordinate for any of the systems, contradicting previous reports. Our findings indicate that the core mechanisms of these chemical reactions can be understood using only two folds, the simplest polynomial of Thom's theory, leading to considerable simplification. In contrast to previous reports, no signatures of the elliptic umbilic unfolding were detected in any of the systems examined. This finding dramatically simplifies the topological rationalization of electron rearrangements within the BET framework, opening new approaches for investigating complex reactions.
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Affiliation(s)
- Leandro Ayarde-Henríquez
- Trinity College Dublin, The university of Dublin. School of Physics, College Green Dublin 2, Ireland.
- Universidad Andrés Bello, Centro de Química Teórica y Computacional (CQT&C), Facultad de Ciencias Exactas, Santiago de Chile, Chile.
| | - Cristian Guerra
- Universidad Andrés Bello, Centro de Química Teórica y Computacional (CQT&C), Facultad de Ciencias Exactas, Santiago de Chile, Chile.
- Universidad Autónoma de Chile, Facultad de Ingeniería, Avenida Pedro de Valdivia 425, 7500912, Santiago de Chile, Chile
- Universidad de Córdoba, Grupo de Química Computacional, Facultad de Ciencias Básicas, Carrera 6 No. 77-305, Montería-Córdoba, Colombia
| | - Mario Duque-Noreña
- Universidad Andrés Bello, Centro de Química Teórica y Computacional (CQT&C), Facultad de Ciencias Exactas, Santiago de Chile, Chile.
- Universidad Andrés Bello, Facultad de Ciencias Exactas, Departamento de Ciencias Químicas, Avenida República 275, 8370146, Santiago de Chile, Chile.
| | - Eduardo Chamorro
- Universidad Andrés Bello, Centro de Química Teórica y Computacional (CQT&C), Facultad de Ciencias Exactas, Santiago de Chile, Chile.
- Universidad Andrés Bello, Facultad de Ciencias Exactas, Departamento de Ciencias Químicas, Avenida República 275, 8370146, Santiago de Chile, Chile.
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3
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Lo R, Manna D, Miriyala VM, Nachtigallová D, Hobza P. Trends in the stability of covalent dative bonds with variable solvent polarity depend on the charge transfer in the Lewis electron-pair system. Phys Chem Chem Phys 2023; 25:25961-25964. [PMID: 37727041 DOI: 10.1039/d3cp03445c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/21/2023]
Abstract
In general, the stability of neutral complexes with dative bonds increases as the polarity of the solvent increases. This is based on the fact that the dipole moment of the complex increases as the charge transferred from the donor to the acceptor increases. As a result, the solvation energy of the complex becomes greater than that of subsystems, causing an increase in the stabilization energy with increasing solvent polarity. Our research confirms this assumption, but only when the charge transfer is sufficiently large. If it is below a certain threshold, the increase in the complex's dipole moment is insufficient to result in a higher solvation energy than subsystems. Thus, the magnitude of the charge transfer in the Lewis electron-pair system determines the stability trends of dative bonds with varying solvent polarity. We used molecular dynamics (MD) simulations based on an explicit solvent model, which is considered more reliable, to verify the results obtained with a continuous solvent model.
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Affiliation(s)
- Rabindranath Lo
- Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, v.v.i., Flemingovo nám. 2, Prague 6 16000, Czech Republic.
- Regional Centre of Advanced Technologies and Materials, Czech Advanced Technology and Research Institute, Palacký University Olomouc, Křížkovského 511/8, Olomouc 77900, Czech Republic
| | - Debashree Manna
- Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, v.v.i., Flemingovo nám. 2, Prague 6 16000, Czech Republic.
| | - Vijay Madhav Miriyala
- Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, v.v.i., Flemingovo nám. 2, Prague 6 16000, Czech Republic.
- Regional Centre of Advanced Technologies and Materials, Czech Advanced Technology and Research Institute, Palacký University Olomouc, Křížkovského 511/8, Olomouc 77900, Czech Republic
| | - Dana Nachtigallová
- Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, v.v.i., Flemingovo nám. 2, Prague 6 16000, Czech Republic.
- IT4Innovations, VŠB-Technical University of Ostrava, 17. listopadu 2172/15, Ostrava-Poruba 70800, Czech Republic
| | - Pavel Hobza
- Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, v.v.i., Flemingovo nám. 2, Prague 6 16000, Czech Republic.
- IT4Innovations, VŠB-Technical University of Ostrava, 17. listopadu 2172/15, Ostrava-Poruba 70800, Czech Republic
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4
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The stability of covalent dative bond significantly increases with increasing solvent polarity. Nat Commun 2022; 13:2107. [PMID: 35440662 PMCID: PMC9018688 DOI: 10.1038/s41467-022-29806-3] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2022] [Accepted: 03/29/2022] [Indexed: 11/29/2022] Open
Abstract
It is generally expected that a solvent has only marginal effect on the stability of a covalent bond. In this work, we present a combined computational and experimental study showing a surprising stabilization of the covalent/dative bond in Me3NBH3 complex with increasing solvent polarity. The results show that for a given complex, its stability correlates with the strength of the bond. Notably, the trends in calculated changes of binding (free) energies, observed with increasing solvent polarity, match the differences in the solvation energies (ΔEsolv) of the complex and isolated fragments. Furthermore, the studies performed on the set of the dative complexes, with different atoms involved in the bond, show a linear correlation between the changes of binding free energies and ΔEsolv. The observed data indicate that the ionic part of the combined ionic-covalent character of the bond is responsible for the stabilizing effects of solvents. Non covalent complexes are often considerably destabilized in the solvent. Here the authors combine vibrational Raman and NMR spectroscopy with a coupled-cluster computational investigation to show that the solvent polarity enhance the complex stability of a Me3NBH3 complex.
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5
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Auride ion interaction with borane: A theoretical study of AuBH3−. Chem Phys Lett 2022. [DOI: 10.1016/j.cplett.2021.139288] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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6
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Smith BA, Vogiatzis KD. σ-Donation and π-Backdonation Effects in Dative Bonds of Main-Group Elements. J Phys Chem A 2021; 125:7956-7966. [PMID: 34477393 DOI: 10.1021/acs.jpca.1c05956] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The nature of donor-acceptor interactions is important for the understanding of dative bonding and can provide vital insights into many chemical processes. Here, we have performed a computational study to elucidate substantial differences between different types of dative interactions. For this purpose, a data set of 20 molecular complexes stabilized by dative bonds was developed (DAT20). A benchmark study that considers many popular density functionals with respect to accurate quantum chemical interaction energies and geometries revealed two different trends between the complexes of DAT20. This behavior was further explored by means of frontier molecular orbitals, extended-transition-state natural orbitals for chemical valence (ETS-NOCV), and natural energy decomposition analysis (NEDA). These methods revealed the extent of the forward and backdonation between the donor and acceptor molecules and how they influence the total interaction energies and molecular geometries. A new classification of dative bonds is suggested.
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Affiliation(s)
- Brett A Smith
- Department of Chemistry, University of Tennessee, Knoxville, Tennessee 37996, United States
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7
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Jones LO, Mosquera MA, Jiang Y, Weiss EA, Schatz GC, Ratner MA. Thermodynamics and Mechanism of a Photocatalyzed Stereoselective [2 + 2] Cycloaddition on a CdSe Quantum Dot. J Am Chem Soc 2020; 142:15488-15495. [DOI: 10.1021/jacs.0c07130] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Leighton O. Jones
- Department of Chemistry, Northwestern University, Evanston, Illinois 60208, United States
| | - Martín A. Mosquera
- Department of Chemistry, Northwestern University, Evanston, Illinois 60208, United States
| | - Yishu Jiang
- Department of Chemistry, Northwestern University, Evanston, Illinois 60208, United States
| | - Emily A. Weiss
- Department of Chemistry, Northwestern University, Evanston, Illinois 60208, United States
- Center for Bio-Inspired Energy Science (CBES), Northwestern University, Evanston, Illinois 60208, United States
| | - George C. Schatz
- Department of Chemistry, Northwestern University, Evanston, Illinois 60208, United States
- Center for Bio-Inspired Energy Science (CBES), Northwestern University, Evanston, Illinois 60208, United States
- Institute for Catalysis in Energy Processes (ICEP), Northwestern University, Evanston, Illinois 60208, United States
| | - Mark A. Ratner
- Department of Chemistry, Northwestern University, Evanston, Illinois 60208, United States
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8
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Lopez‐Castillo A, Morgon NH. The Change in the Nature of the Chemical Bond through Hydrogen Tunneling Process in BN‐Ethylamine. ChemistrySelect 2019. [DOI: 10.1002/slct.201903664] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Alejandro Lopez‐Castillo
- Departamento de QuímicaUniversidade Federal de São Carlos (UFSCar) 13565-905 São Carlos-SP Brazil
| | - Nelson H. Morgon
- Instituto de QuímicaUniversidade Estadual de Campinas (UNICAMP), CP 6154 13083-970 Campinas-SP Brazil
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9
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Almas Q, Pearson JK. Novel Bonding Mode in Phosphine Haloboranes. ACS OMEGA 2018; 3:608-614. [PMID: 31457917 PMCID: PMC6641503 DOI: 10.1021/acsomega.7b01529] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/10/2017] [Accepted: 01/08/2018] [Indexed: 06/10/2023]
Abstract
We have predicted, using a wide range of theoretical models, the potential energy surfaces of dative bond stretching in some phosphine haloboranes and closely associated analogues. It is shown that these dative complexes demonstrate unusual bond stretching potentials that are characterized by having multiple inflection points and are not able to be fit to any traditional Morse or Lennard-Jones-type curve. Specifically, in the case of Cl3B-PH3, this effect is so pronounced that the surface actually exhibits two distinct minima. To the best of our knowledge, this is the first example of such a unique bonding phenomenon reported for these species and is explained by the competition between the energetic cost of the required pyramidalization of the Lewis acid to form a dative bond and the stabilization from the favorable attraction between the Lewis acid and base. When the cost of pyramidalization of the Lewis acid is high relative to the strength of the interaction between the acid and base, the potential well associated with dative bonding is significantly weakened and the result is a relatively flat potential energy surface that is susceptible to the unusual characteristics described herein.
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10
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Alherz A, Lim CH, Hynes JT, Musgrave CB. Predicting Hydride Donor Strength via Quantum Chemical Calculations of Hydride Transfer Activation Free Energy. J Phys Chem B 2018; 122:1278-1288. [PMID: 29251933 DOI: 10.1021/acs.jpcb.7b12093] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
We propose a method to approximate the kinetic properties of hydride donor species by relating the nucleophilicity (N) of a hydride to the activation free energy ΔG⧧ of its corresponding hydride transfer reaction. N is a kinetic parameter related to the hydride transfer rate constant that quantifies a nucleophilic hydridic species' tendency to donate. Our method estimates N using quantum chemical calculations to compute ΔG⧧ for hydride transfers from hydride donors to CO2 in solution. A linear correlation for each class of hydrides is then established between experimentally determined N values and the computationally predicted ΔG⧧; this relationship can then be used to predict nucleophilicity for different hydride donors within each class. This approach is employed to determine N for four different classes of hydride donors: two organic (carbon-based and benzimidazole-based) and two inorganic (boron and silicon) hydride classes. We argue that silicon and boron hydrides are driven by the formation of the more stable Si-O or B-O bond. In contrast, the carbon-based hydrides considered herein are driven by the stability acquired upon rearomatization, a feature making these species of particular interest, because they both exhibit catalytic behavior and can be recycled.
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Affiliation(s)
- Abdulaziz Alherz
- Department of Chemical and Biological Engineering, University of Colorado , Boulder, Colorado 80309, United States
| | - Chern-Hooi Lim
- Department of Chemical and Biological Engineering, University of Colorado , Boulder, Colorado 80309, United States.,Department of Chemistry and Biochemistry, University of Colorado , Boulder, Colorado 80309, United States
| | - James T Hynes
- Department of Chemistry and Biochemistry, University of Colorado , Boulder, Colorado 80309, United States.,Chemistry Department, Ecole Normale Supérieure-PSL Research University, Sorbonne Universités-UPMC University Paris 06 , CNRS UMR 8640 Pasteur, 24 rue Lhomond, 75005 Paris, France
| | - Charles B Musgrave
- Department of Chemical and Biological Engineering, University of Colorado , Boulder, Colorado 80309, United States.,Department of Chemistry and Biochemistry, University of Colorado , Boulder, Colorado 80309, United States.,Materials Science and Engineering Program, University of Colorado , Boulder, Colorado 80309, United States
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11
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Structural analysis of pyridine-imino boronic esters involving secondary interactions on solid state. J Mol Struct 2017. [DOI: 10.1016/j.molstruc.2017.01.013] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
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12
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Lepetit C, Maraval V, Canac Y, Chauvin R. On the nature of the dative bond: Coordination to metals and beyond. The carbon case. Coord Chem Rev 2016. [DOI: 10.1016/j.ccr.2015.07.018] [Citation(s) in RCA: 43] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
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13
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Janesko BG. Using Nonempirical Semilocal Density Functionals and Empirical Dispersion Corrections to Model Dative Bonding in Substituted Boranes. J Chem Theory Comput 2015; 6:1825-33. [PMID: 26615842 DOI: 10.1021/ct1000846] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Dative bonds to substituted boranes represent a challenge for the approximate exchange-correlation functionals typically used in density functional theory (DFT). Accurately modeling these bonds with DFT has usually required highly parametrized functionals, large admixtures of exact exchange, or computationally expensive double hybrids. This work shows that the nonempirical semilocal PBEsol functional, and the nonempirical semilocal PBE and TPSS functionals augmented with empirical interatomic dispersion corrections, accurately treat several representative problems in dative bonding. These methods typically surpass the MPW1K "kinetics" global hybrid previously recommended for dative bonds. This work also provides additional insights into the accuracy of the parametrized M06 functionals and indicates some deficiencies of the B97-D functional relative to PBE-D and TPSS-D. Applications to frustrated Lewis pairs illustrate the potential of these methods.
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Affiliation(s)
- Benjamin G Janesko
- Department of Chemistry, Texas Christian University Fort Worth, Texas 76109
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14
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Dong H, Li W, Sun J, Li S, Klein ML. Understanding the Boron–Nitrogen Interaction and Its Possible Implications in Drug Design. J Phys Chem B 2015; 119:14393-401. [DOI: 10.1021/acs.jpcb.5b07783] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Hao Dong
- Kuang
Yaming Honors School, Nanjing University, Nanjing, P.R. China
- Institute
for Computational Molecular Science, Temple University, 1900 North
12th Street, Philadelphia, Pennsylvania 19122-6078, United States
| | - Wei Li
- School
of Chemistry and Chemical Engineering, Key Laboratory of Mesoscopic
Chemistry of Ministry of Education, Institute of Theoretical and Computational
Chemistry, Nanjing University, Nanjing, P.R. China
| | - Jianwei Sun
- Department
of Physics, Temple University, 1900 North 12th Street, Philadelphia, Pennsylvania 19122-6078, United States
| | - Shuhua Li
- School
of Chemistry and Chemical Engineering, Key Laboratory of Mesoscopic
Chemistry of Ministry of Education, Institute of Theoretical and Computational
Chemistry, Nanjing University, Nanjing, P.R. China
| | - Michael L. Klein
- Institute
for Computational Molecular Science, Temple University, 1900 North
12th Street, Philadelphia, Pennsylvania 19122-6078, United States
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15
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Martín-Sómer A, Mó O, Yáñez M, Guillemin JC. Acidity enhancement of unsaturated bases of group 15 by association with borane and beryllium dihydride. Unexpected boron and beryllium Brønsted acids. Dalton Trans 2015; 44:1193-202. [DOI: 10.1039/c4dt02292k] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
BeH2and BH3association with unsaturated bases of group 15 increases their acidity and changes the trend. Ethynyl : BeH2complexes unexpectedly behave as Be acids.
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Affiliation(s)
- Ana Martín-Sómer
- Departamento de Química
- Facultad de Ciencias
- Módulo 13
- Universidad Autónoma de Madrid
- 28049 Madrid
| | - Otilia Mó
- Departamento de Química
- Facultad de Ciencias
- Módulo 13
- Universidad Autónoma de Madrid
- 28049 Madrid
| | - Manuel Yáñez
- Departamento de Química
- Facultad de Ciencias
- Módulo 13
- Universidad Autónoma de Madrid
- 28049 Madrid
| | - Jean-Claude Guillemin
- Institut des Sciences Chimiques de Rennes
- École Nationale Supérieure de Chimie de Rennes
- CNRS
- UMR 6226
- 35708 Rennes Cedex 7
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16
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Noonan G, Leach AG. A mechanistic proposal for the protodeboronation of neat boronic acids: boronic acid mediated reaction in the solid state. Org Biomol Chem 2015; 13:2555-60. [DOI: 10.1039/c4ob02543a] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Boronic acids that undergo protodeboronation as solids are stable in solution: the solid state organizes them for reaction.
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Affiliation(s)
| | - Andrew G. Leach
- School of Pharmacy and Biomolecular Sciences
- Liverpool John Moores University
- Liverpool
- UK
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17
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Stojanović M, Baranac-Stojanović M. A theoretical study on borenium ion affinities toward ammonia, formaldehyde and chloride anions. RSC Adv 2015. [DOI: 10.1039/c5ra13825f] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
The effect of R/R′ and L on borenium ion affinities toward NH3, HCHO and Cl− has been evaluated by DFT calculations and rationalized on the basis of an energy decomposition analysis.
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18
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Reinemann DN, Tschumper GS, Hammer NI. Characterizing the B-P stretching vibration in phosphorus-substituted phosphine boranes. Chemphyschem 2014; 15:1867-71. [PMID: 24668930 DOI: 10.1002/cphc.201400036] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2014] [Indexed: 11/07/2022]
Abstract
The experimental Raman spectra of three phosphorus-substituted phosphine boranes with bulky hydrocarbon substituents are presented and compared to the results of electronic structure computations by using the M06-2X method and the 6-311G(2df, 2pd) basis set. Total-energy distributions (TEDs) are calculated to describe the degree of mixing of the dative-bond stretching vibration with other simple internal coordinates. This level of theory is found to accurately reproduce the B-P stretching frequency in all three crystalline solids. The Raman spectra of five smaller B-P-containing molecules, including BH(3) PH(3), are also simulated at this level of theory and compared to previous experimental results.
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Affiliation(s)
- Dana N Reinemann
- Department of Chemistry and Biochemistry, University of Mississippi, University, Mississippi 38677 (USA)
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19
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Parafiniuk M, Mitoraj MP. On the origin of internal rotation in ammonia borane. J Mol Model 2014; 20:2272. [PMID: 24863530 PMCID: PMC4072093 DOI: 10.1007/s00894-014-2272-y] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2013] [Accepted: 04/24/2014] [Indexed: 01/18/2023]
Abstract
The internal rotation in ammonia borane (AB) was studied on the basis of natural orbitals for chemical valence (NOCV) and eigenvectors for Pauli repulsion (NOPR). We found that the total hyperconjugation stabilization (ca. 5 kcal mol−1), based on the charge transfer from the occupied σ (B–H) orbitals into the empty σ*(N–H), slightly favors the staggered conformation over the eclipsed one; however, the barrier to internal rotation in ammonia borane can be understood predominantly in a ‘classical’ way, as originating from the steric (Pauli) repulsion contributions (of the kinetic origin) that act solely between N–H and B–H bonds. Repulsion between the lone pair of ammonia and the adjacent B–H bonds was found to be dominant in absolute terms; however, it does not determine the rotational barrier. Similar conclusions on the role of CH↔HC repulsion appeared to be valid for isoelectronic ethane. Pauli (kinetic) repulsion acting between the N-H and B-H bonds of ammonia borane ![]()
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Affiliation(s)
- Monika Parafiniuk
- Department of Theoretical Chemistry, Faculty of Chemistry, Jagiellonian University, R.Ingardena 3, 30-060 Krakow, Poland
| | - Mariusz P. Mitoraj
- Department of Theoretical Chemistry, Faculty of Chemistry, Jagiellonian University, R.Ingardena 3, 30-060 Krakow, Poland
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20
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Yáñez M, Mó O, Alkorta I, Elguero J. Can Conventional Bases and Unsaturated Hydrocarbons Be Converted into Gas-Phase Superacids That Are Stronger than Most of the Known Oxyacids? The Role of Beryllium Bonds. Chemistry 2013; 19:11637-43. [DOI: 10.1002/chem.201300808] [Citation(s) in RCA: 50] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2013] [Revised: 05/30/2013] [Indexed: 11/08/2022]
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21
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Brunker TJ, Kovač B, Kowalski K, Polit W, Winter RF, Rheingold AL, Novak I. Electronic structures of methylated azaferrocenes and their borane adducts: Photoelectron spectroscopy and electronic structure calculations. Dalton Trans 2012; 41:3675-83. [DOI: 10.1039/c2dt12237e] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
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22
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Mitoraj MP. Bonding in Ammonia Borane: An Analysis Based on the Natural Orbitals for Chemical Valence and the Extended Transition State Method (ETS-NOCV). J Phys Chem A 2011; 115:14708-16. [DOI: 10.1021/jp209712s] [Citation(s) in RCA: 73] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Mariusz Paweł Mitoraj
- Department of Theoretical Chemistry, Faculty of Chemistry, Jagiellonian University, R. Ingardena 3, 30-060 Cracow, Poland
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23
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Reinemann DN, Wright AM, Wolfe JD, Tschumper GS, Hammer NI. Vibrational Spectroscopy of N-Methyliminodiacetic Acid (MIDA)-Protected Boronate Ester: Examination of the B–N Dative Bond. J Phys Chem A 2011; 115:6426-31. [DOI: 10.1021/jp112016j] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Dana N. Reinemann
- Department of Chemistry and Biochemistry, University of Mississippi, University, Mississippi 38677, United States
| | - Ashley M. Wright
- Department of Chemistry and Biochemistry, University of Mississippi, University, Mississippi 38677, United States
| | - Jonathan D. Wolfe
- Department of Chemistry and Biochemistry, University of Mississippi, University, Mississippi 38677, United States
| | - Gregory S. Tschumper
- Department of Chemistry and Biochemistry, University of Mississippi, University, Mississippi 38677, United States
| | - Nathan I. Hammer
- Department of Chemistry and Biochemistry, University of Mississippi, University, Mississippi 38677, United States
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24
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Shin SBY, Almeida RD, Gerona-Navarro G, Bracken C, Jaffrey SR. Assembling ligands in situ using bioorthogonal boronate ester synthesis. ACTA ACUST UNITED AC 2011; 17:1171-6. [PMID: 21095566 DOI: 10.1016/j.chembiol.2010.09.008] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2010] [Revised: 08/19/2010] [Accepted: 09/09/2010] [Indexed: 10/18/2022]
Abstract
Many molecules that could manipulate cellular function are not practical due to their large size and concomitant undesirable pharmocokinetic properties. Here, we describe a bioorthogonal, highly stable boronate ester (HiSBE) synthesis and use this reaction to synthesize a biologically active molecule from smaller precursors in a physiological context. The rapid rate of HiSBE synthesis suggests that it may be useful for assembling a wide variety of biologically active molecules in physiological solutions.
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Affiliation(s)
- Sung Bin Y Shin
- Department of Pharmacology, Weill Medical College, Cornell University, New York, NY 10065, USA
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25
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Heiden ZM, Schedler M, Stephan DW. Synthesis and Reactivity of o-Benzylphosphino- and o-α-Methylbenzyl(N,N-dimethyl)amine-Boranes. Inorg Chem 2011; 50:1470-9. [DOI: 10.1021/ic102044z] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Zachariah M. Heiden
- Department of Chemistry, University of Toronto, 80 St. George St., Toronto, Ontario M5S 3H6, Canada
| | - Michael Schedler
- Department of Chemistry, University of Toronto, 80 St. George St., Toronto, Ontario M5S 3H6, Canada
| | - Douglas W. Stephan
- Department of Chemistry, University of Toronto, 80 St. George St., Toronto, Ontario M5S 3H6, Canada
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26
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Berski S, Latajka Z, Gordon AJ. On the multiple B–N bonding in boron compounds using the topological analysis of electron localization function (ELF). NEW J CHEM 2011. [DOI: 10.1039/c0nj00517g] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
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27
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Potter RG, Camaioni DM, Vasiliu M, Dixon DA. Thermochemistry of Lewis Adducts of BH3 and Nucleophilic Substitution of Triethylamine on NH3BH3 in Tetrahydrofuran. Inorg Chem 2010; 49:10512-21. [DOI: 10.1021/ic101481c] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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28
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Alkorta I, Elguero J, Del Bene JE, Mó O, Yáñez M. New Insights into Factors Influencing BN Bonding in X:BH
3−
n
F
n
and X:BH
3−
n
Cl
n
for X=N
2
, HCN, LiCN, H
2
CNH, NF
3
, NH
3
and
n
=0–3: The Importance of Deformation. Chemistry 2010; 16:11897-905. [DOI: 10.1002/chem.201001254] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Ibon Alkorta
- Instituto de Química Médica (CSIC), Juan de la Cierva, 3, 28006 Madrid (Spain)
| | - José Elguero
- Instituto de Química Médica (CSIC), Juan de la Cierva, 3, 28006 Madrid (Spain)
| | - Janet E. Del Bene
- Department of Chemistry, Youngstown State University, Youngstown, Ohio 44555 (USA)
| | - Otilia Mó
- Departamento de Química, C‐9, Universidad Autónoma de Madrid, Cantoblanco, 28049 Madrid (Spain), Fax: (+34) 91‐497‐5238
| | - Manuel Yáñez
- Departamento de Química, C‐9, Universidad Autónoma de Madrid, Cantoblanco, 28049 Madrid (Spain), Fax: (+34) 91‐497‐5238
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29
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Rakow JR, Tüllmann S, Holthausen MC. H/Br Exchange in BBr3 by HSiR3 (R = H, CH3, C2H5): Origin of DFT Failures to Describe a Seemingly Innocuous Reaction Barrier. J Phys Chem A 2009; 113:12035-43. [DOI: 10.1021/jp906502y] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Julia R. Rakow
- Institut für Anorganische Chemie, Johann Wolfgang Goethe-Universität Frankfurt am Main, Max-von-Laue-Str. 7, D-60438 Frankfurt am Main, Germany
| | - Sandor Tüllmann
- Institut für Anorganische Chemie, Johann Wolfgang Goethe-Universität Frankfurt am Main, Max-von-Laue-Str. 7, D-60438 Frankfurt am Main, Germany
| | - Max C. Holthausen
- Institut für Anorganische Chemie, Johann Wolfgang Goethe-Universität Frankfurt am Main, Max-von-Laue-Str. 7, D-60438 Frankfurt am Main, Germany
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30
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Plumley JA, Evanseck JD. Periodic Trends and Index of Boron Lewis Acidity. J Phys Chem A 2009; 113:5985-92. [DOI: 10.1021/jp811202c] [Citation(s) in RCA: 71] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Joshua A. Plumley
- Contribution from the Center for Computational Sciences and the Department of Chemistry and Biochemistry, Duquesne University, 600 Forbes Avenue, Pittsburgh, Pennsylvania 15282-1530
| | - Jeffrey D. Evanseck
- Contribution from the Center for Computational Sciences and the Department of Chemistry and Biochemistry, Duquesne University, 600 Forbes Avenue, Pittsburgh, Pennsylvania 15282-1530
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31
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Kaszynski P, Pakhomov S, Gurskii ME, Erdyakov SY, Starikova ZA, Lyssenko KA, Antipin MY, Young VG, Bubnov YN. 1-Pyridine- and 1-Quinuclidine-1-boraadamantane as Models for Derivatives of 1-Borabicyclo[2.2.2]octane. Experimental and Theoretical Evaluation of the B−N Fragment as a Polar Isosteric Substitution for the C−C Group in Liquid Crystal Compounds. J Org Chem 2009; 74:1709-20. [DOI: 10.1021/jo802504c] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Piotr Kaszynski
- Organic Materials Research Group, Department of Chemistry, Vanderbilt University, Nashville, Tennessee 37235, N. D. Zelinsky Institute of Organic Chemistry and A. N. Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, Moscow, Russia 117913, and X-ray Crystallographic Laboratory, Department of Chemistry, University of Minnesota, Twin Cities, Minnesota 55455
| | - Serhii Pakhomov
- Organic Materials Research Group, Department of Chemistry, Vanderbilt University, Nashville, Tennessee 37235, N. D. Zelinsky Institute of Organic Chemistry and A. N. Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, Moscow, Russia 117913, and X-ray Crystallographic Laboratory, Department of Chemistry, University of Minnesota, Twin Cities, Minnesota 55455
| | - Mikhail E. Gurskii
- Organic Materials Research Group, Department of Chemistry, Vanderbilt University, Nashville, Tennessee 37235, N. D. Zelinsky Institute of Organic Chemistry and A. N. Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, Moscow, Russia 117913, and X-ray Crystallographic Laboratory, Department of Chemistry, University of Minnesota, Twin Cities, Minnesota 55455
| | - Sergey Yu. Erdyakov
- Organic Materials Research Group, Department of Chemistry, Vanderbilt University, Nashville, Tennessee 37235, N. D. Zelinsky Institute of Organic Chemistry and A. N. Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, Moscow, Russia 117913, and X-ray Crystallographic Laboratory, Department of Chemistry, University of Minnesota, Twin Cities, Minnesota 55455
| | - Zoya A. Starikova
- Organic Materials Research Group, Department of Chemistry, Vanderbilt University, Nashville, Tennessee 37235, N. D. Zelinsky Institute of Organic Chemistry and A. N. Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, Moscow, Russia 117913, and X-ray Crystallographic Laboratory, Department of Chemistry, University of Minnesota, Twin Cities, Minnesota 55455
| | - Konstantin A. Lyssenko
- Organic Materials Research Group, Department of Chemistry, Vanderbilt University, Nashville, Tennessee 37235, N. D. Zelinsky Institute of Organic Chemistry and A. N. Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, Moscow, Russia 117913, and X-ray Crystallographic Laboratory, Department of Chemistry, University of Minnesota, Twin Cities, Minnesota 55455
| | - Mikhail Yu. Antipin
- Organic Materials Research Group, Department of Chemistry, Vanderbilt University, Nashville, Tennessee 37235, N. D. Zelinsky Institute of Organic Chemistry and A. N. Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, Moscow, Russia 117913, and X-ray Crystallographic Laboratory, Department of Chemistry, University of Minnesota, Twin Cities, Minnesota 55455
| | - Victor G. Young
- Organic Materials Research Group, Department of Chemistry, Vanderbilt University, Nashville, Tennessee 37235, N. D. Zelinsky Institute of Organic Chemistry and A. N. Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, Moscow, Russia 117913, and X-ray Crystallographic Laboratory, Department of Chemistry, University of Minnesota, Twin Cities, Minnesota 55455
| | - Yurii N. Bubnov
- Organic Materials Research Group, Department of Chemistry, Vanderbilt University, Nashville, Tennessee 37235, N. D. Zelinsky Institute of Organic Chemistry and A. N. Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, Moscow, Russia 117913, and X-ray Crystallographic Laboratory, Department of Chemistry, University of Minnesota, Twin Cities, Minnesota 55455
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32
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Plumley JA, Evanseck JD. Hybrid Meta-Generalized Gradient Functional Modeling of Boron−Nitrogen Coordinate Covalent Bonds. J Chem Theory Comput 2008; 4:1249-53. [DOI: 10.1021/ct800210e] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Joshua A. Plumley
- Center for Computational Sciences and the Department of Chemistry and Biochemistry, Duquesne University, 600 Forbes Avenue, Pittsburgh, Pennsylvania 15282-1530
| | - Jeffrey D. Evanseck
- Center for Computational Sciences and the Department of Chemistry and Biochemistry, Duquesne University, 600 Forbes Avenue, Pittsburgh, Pennsylvania 15282-1530
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