1
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U NKP, K JV, K M. Complexation behaviour of piceatannol ligand with Ti(IV) and Zr(IV) metal ions: a combined DFT and deep learning investigation. Struct Chem 2023. [DOI: 10.1007/s11224-023-02153-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/28/2023]
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2
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Neenu Krishna P, Muraleedharan K. Metal chelation ability of Protocatechuic acid anion with 210Po84; A theoretical insight. COMPUT THEOR CHEM 2022. [DOI: 10.1016/j.comptc.2022.113996] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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3
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Zhang JM, Wang HQ, Li HF, Xie B, Han C, Jiang LY. Insights into the structure and growth of Lu-doped germanium clusters: comparing density functional theory calculations with photoelectron spectroscopy experiments. Mol Phys 2022. [DOI: 10.1080/00268976.2022.2131644] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
Affiliation(s)
- Jia-Ming Zhang
- College of Engineering, Huaqiao University, Quanzhou, People’s Republic of China
| | - Huai-Qian Wang
- College of Engineering, Huaqiao University, Quanzhou, People’s Republic of China
| | - Hui-Fang Li
- College of Engineering, Huaqiao University, Quanzhou, People’s Republic of China
| | - Biao Xie
- College of Information Science and Engineering, Huaqiao University, Xiamen, People’s Republic of China
| | - Chao Han
- College of Engineering, Huaqiao University, Quanzhou, People’s Republic of China
| | - Long-Ying Jiang
- College of Engineering, Huaqiao University, Quanzhou, People’s Republic of China
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4
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Nguyen HT, Cuong NT, Lan NT, Tung NT, Nguyen MT, Tam NM. First-row transition metal doped germanium clusters Ge 16M: some remarkable superhalogens. RSC Adv 2022; 12:13487-13499. [PMID: 35527729 PMCID: PMC9068264 DOI: 10.1039/d1ra08527a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2021] [Accepted: 04/26/2022] [Indexed: 11/21/2022] Open
Abstract
A theoretical study of geometric and electronic structures, stability and magnetic properties of both neutral and anionic Ge16M0/− clusters with M being a first-row 3d transition metal atom, is performed using quantum chemical approaches. Both the isoelectronic Ge16Sc− anion and neutral Ge16Ti that have a perfect Frank–Kasper tetrahedral Td shape and an electron shell filled with 68 valence electrons, emerge as magic clusters with an enhanced thermodynamic stability. The latter can be rationalized by the simple Jellium model. Geometric distortions from the Frank–Kasper tetrahedron of Ge16M having more or less than 68 valence electrons can be understood by a Jahn–Teller effect. Remarkably, DFT calculations reveal that both neutral Ge16Sc and Ge16Cu can be considered as superhalogens as their electron affinities (≥3.6 eV) exceed the value of the halogen atoms and even that of icosahedral Al13. A detailed view of the magnetic behavior of Ge16M0/− clusters shows that the magnetic moments of the atomic metals remain large even when they are quenched upon doping. When M goes from Sc to Zn, the total spin magnetic moment of Ge16M0/− increases steadily and reaches the maximum value of 3 μB with M = Mn before decreasing towards the end of the first-row 3d block metals. Furthermore, the IR spectra of some tetrahedral Ge16M are also predicted. A theoretical study of geometric and electronic structures, stability and magnetic properties of both neutral and anionic Ge16M0/− clusters with M being a first-row 3d transition metal atom, is performed using quantum chemical approaches.![]()
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Affiliation(s)
- Huu Tho Nguyen
- Faculty of Natural Sciences Education, Sai Gon University 273 An Duong Vuong Street Ho Chi Minh City Vietnam
| | - Ngo Tuan Cuong
- Center for Computational Science, Faculty of Chemistry, Hanoi National University of Education Hanoi Vietnam
| | - Ngo Thi Lan
- Institute of Materials Science and Graduate University of Science and Technology, Vietnam Academy of Science and Technology 18 Hoang Quoc Viet Hanoi Vietnam.,Institute of Science and Technology, TNU-University of Sciences Tan Thinh Ward Thai Nguyen City Vietnam
| | - Nguyen Thanh Tung
- Institute of Materials Science and Graduate University of Science and Technology, Vietnam Academy of Science and Technology 18 Hoang Quoc Viet Hanoi Vietnam
| | - Minh Tho Nguyen
- Institute for Computational Science and Technology (ICST) Quang Trung Software City Ho Chi Minh City Vietnam
| | - Nguyen Minh Tam
- Laboratory of Theoretical and Computational Biophysics, Advanced Institute of Materials Science, Ton Duc Thang University Ho Chi Minh City Vietnam .,Faculty of Pharmacy, Ton Duc Thang University Ho Chi Minh City Vietnam
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5
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Gupta AK, Raghavachari K. Three-Dimensional Convolutional Neural Networks Utilizing Molecular Topological Features for Accurate Atomization Energy Predictions. J Chem Theory Comput 2022; 18:2132-2143. [PMID: 35226496 DOI: 10.1021/acs.jctc.1c00504] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Deep learning methods provide a novel way to establish a correlation between two quantities. In this context, computer vision techniques such as three-dimensional (3D)-convolutional neural networks become a natural choice to associate a molecular property with its structure due to the inherent 3D nature of a molecule. However, traditional 3D input data structures are intrinsically sparse in nature, which tend to induce instabilities during the learning process, which in turn may lead to underfitted results. To address this deficiency, in this project, we propose to use quantum-chemically derived molecular topological features, namely, localized orbital locator and electron localization function, as molecular descriptors, which provide a relatively denser input representation in a 3D space. Such topological features provide a detailed picture of the atomic and electronic configuration and interatomic interactions in the molecule and hence are ideal for predicting properties that are highly dependent on the physical or electronic structure of the molecule. Herein, we demonstrate the efficacy of our proposed model by applying it to the task of predicting atomization energies for the QM9-G4MP2 data set, which contains ∼134k molecules. Furthermore, we incorporated the Δ-machine learning approach into our model, which enabled us to reach beyond benchmark accuracy levels (∼1.0 kJ mol-1). As a result, we consistently obtain impressive mean absolute errors of the order 0.1 kcal mol-1 (∼0.42 kJ mol-1) versus the G4(MP2) theory using relatively modest models, which could potentially be improved further in a systematic manner using additional compute resources.
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Affiliation(s)
- Ankur Kumar Gupta
- Department of Chemistry, Indiana University, Bloomington, Indiana 47405, United States
| | - Krishnan Raghavachari
- Department of Chemistry, Indiana University, Bloomington, Indiana 47405, United States
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6
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Fan YW, Kong XY, Zhao LJ, Wang HQ, Li HF, Zhan Q, Xie B, Xu HG, Zheng WJ. A joint experimental and theoretical study on structural, electronic, and magnetic properties of MnGe n - (n = 3-14) clusters. J Chem Phys 2021; 154:204302. [PMID: 34241172 DOI: 10.1063/5.0053414] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
A systematic structure and property investigation of MnGen - (n = 3-14) was conducted by means of density functional theory coupled with mass-selected anion photoelectron spectroscopy. This combined theoretical and experimental study allows global minimum and coexistence structures to be identified. It is found that the pentagonal bipyramid shape is the basic framework for the nascent growth process of MnGen - (n = 3-10), and from n = 10, the endohedral structures can be found. For n = 12, the anion MnGe12 - cluster probably includes two isomers: a major isomer with a puckered hexagonal prism geometry and a minor isomer with a distorted icosahedron geometry. Specifically, the puckered hexagonal prism isomer follows the Wade-Mingos rules and can be suggested as a new kind of superatom with the magnetic property. Furthermore, the results of adaptive natural density partitioning and deformation density analyses suggest a polar covalent interaction between Ge and Mn for endohedral clusters of MnGe12 -. The spin density and natural population analysis indicate that MnGen - clusters have high magnetic moments localized on Mn. The density of states diagram visually shows the significant spin polarization for endohedral structures and reveals the weak interaction between the Ge 4p orbital and the 4s, 3d orbitals of Mn.
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Affiliation(s)
- Yi-Wei Fan
- College of Information Science and Engineering, Huaqiao University, Xiamen 361021, China
| | - Xiang-Yu Kong
- Beijing National Laboratory for Molecular Sciences, State Key Laboratory of Molecular Reaction Dynamics, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
| | - Li-Juan Zhao
- Beijing National Laboratory for Molecular Sciences, State Key Laboratory of Molecular Reaction Dynamics, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
| | - Huai-Qian Wang
- College of Information Science and Engineering, Huaqiao University, Xiamen 361021, China
| | - Hui-Fang Li
- College of Engineering, Huaqiao University, Quanzhou 362021, China
| | - Qian Zhan
- College of Engineering, Huaqiao University, Quanzhou 362021, China
| | - Biao Xie
- College of Information Science and Engineering, Huaqiao University, Xiamen 361021, China
| | - Hong-Guang Xu
- Beijing National Laboratory for Molecular Sciences, State Key Laboratory of Molecular Reaction Dynamics, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
| | - Wei-Jun Zheng
- Beijing National Laboratory for Molecular Sciences, State Key Laboratory of Molecular Reaction Dynamics, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
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7
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Tran VT, Tran QT. Interpretation of photoelectron spectra of CoGe n- (n = 4, 5) clusters by multiconfigurational RASPT2 calculations. J Mol Model 2021; 27:131. [PMID: 33893559 DOI: 10.1007/s00894-021-04753-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2020] [Accepted: 04/15/2021] [Indexed: 11/29/2022]
Abstract
The low-lying electronic states CoGen-/0 (n = 4, 5) have been investigated with density functional theory and the state-of-the-art RASSCF/RASPT2 method to give assignments for the anion photoelectron spectra. The BP86 functional was employed to optimize the geometrical structures of the electronic states, while the RASSCF/RASPT2 was applied to calculate the single-point energies. With the RASSCF/RASPT2 approach, the active spaces are extended to a size of 21 orbitals for CoGe4-/0 and 24 orbitals for CoGe5-/0. The ground states of CoGe4-/0 are determined to be 3A″ and 2A″ of a trigonal bipyramidal structure in which the Co atom is situated at the equatorial corner of the bipyramid. The vertical detachment energies of the transitions from the anionic ground state to the neutral 2A″, 14A″, 2A', 24A″, 34A″, 14A', 24A', and 64A″ states are evaluated to be 2.29, 2.39, 2.60, 2.83, 3.17, 3.24, 3.47, and 4.00 eV. For the CoGe5-/0 clusters, the ground states are computed to be 1A1 and 12A2 of an octahedral structure. The vertical detachment energies of the removal of one electron from the anionic ground state to result in the 12A2, 12A1, 22A1, 12B1, 12B2, 42B1, 42B2, and 62A2 states are estimated to be 2.16, 2.79, 2.84, 3.06, 3.06, 3.59, 3.59, and 4.22 eV. All features in the photoelectron spectra of CoGe4- and CoGe5- are interpreted based on the computed electron detachment energies of the anionic ground states.
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Affiliation(s)
- Van Tan Tran
- Theoretical and Physical Chemistry Division, Dong Thap University, 783-Pham Huu Lau, Cao Lanh City, Dong Thap, Vietnam.
| | - Quoc Tri Tran
- Theoretical and Physical Chemistry Division, Dong Thap University, 783-Pham Huu Lau, Cao Lanh City, Dong Thap, Vietnam
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8
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Liu B, Yang J. Thermochemical Properties and Growth Mechanism of the Ag-Doped Germanium Clusters, AgGe n λ with n = 1-13 and λ = -1, 0, and +1. ACS OMEGA 2021; 6:9813-9827. [PMID: 33869961 PMCID: PMC8047658 DOI: 10.1021/acsomega.1c00501] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/27/2021] [Accepted: 03/24/2021] [Indexed: 06/12/2023]
Abstract
A systematic investigation of the silver-doped germanium clusters AgGe n with n = 1-13 in the neutral, anionic, and cationic states is performed using the unbiased global search technique combined with a double-density functional scheme. The lowest-energy minima of the clusters are identified based on calculated energies and measured photoelectron spectra (PES). Total atomization energies and thermochemical properties such as electron affinity (EA), ionization potential (IP), binding energy, hardness, and highest occupied molecular orbital-lowest unoccupied molecular orbital (HOMO-LUMO) gap are obtained and compared with those of pure germanium clusters. For neutral and anionic clusters, although the most stable structures are inconsistent when n = 7-10, their structure patterns have an exohedral structure except for n = 12, which is a highly symmetrical endohedral configuration. For the cationic state, the most stable structures are attaching structures (in which an Ag atom is adsorbed on the Ge n cluster or a Ge atom is adsorbed on the AgGe n-1 cluster) at n = 1-12, and when n = 13, the cage configuration is formed. The analyses of binding energy indicate that doping of an Ag atom into the neutral and charged Ge n clusters decreases their stability. The theoretical EAs of AgGe n clusters agree with the experimental values. The IP of neutral Ge n clusters is decreasing when doped with an Ag atom. The chemical activity of AgGe n is analyzed through HOMO-LUMO gaps and hardness, and the variant trend of both versus cluster size is slightly different. The accuracy of the theoretical analyses in this paper is demonstrated successfully by the agreement between simulated and experimental results such as PES, IP, EA, and binding energy.
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Affiliation(s)
- Bin Liu
- School
of Chemical Engineering, Inner Mongolia Key Laboratory of Theoretical
and Computational Chemistry Simulation, Inner Mongolia University of Technology, Hohhot 010051, People’s Republic of China
| | - Jucai Yang
- School
of Chemical Engineering, Inner Mongolia Key Laboratory of Theoretical
and Computational Chemistry Simulation, Inner Mongolia University of Technology, Hohhot 010051, People’s Republic of China
- School
of Energy and Power Engineering, Inner Mongolia
University of Technology, Hohhot 010051, People’s Republic
of China
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9
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Systematic investigation of structure and optoelectronic properties of Ge (n = 3–20), MGe9 (M = Ga, Si, Sn, As) and GaxGe(10−x) (x = 1–10) Clusters: Computational approach. Polyhedron 2021. [DOI: 10.1016/j.poly.2020.114874] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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10
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Benaida M, Aiadi KE, Mahtout S, Bentouila O, Djaadi S, Harb M. DFT-based investigation of different properties for transition metal-doped germanium TMGe n (TM = Ru, Rh; n = 1-20) clusters. J Mol Model 2020; 26:343. [PMID: 33201397 DOI: 10.1007/s00894-020-04598-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2020] [Accepted: 11/03/2020] [Indexed: 10/23/2022]
Abstract
The geometries and energetic, electronic, and magnetic features of transition metal-doped germanium (TMGen with TM = Ru, Rh; n = 1-20) clusters are systematically studied by means of first principle computations on the basis of the density functional theory (DFT) approach. The doping TM atom largely participates to strengthen the Gen cluster stability by increasing the binding energies. A good stability is obtained for RuGe12, RhGe12, and RhGe14 clusters. The various explored isomers of TMGen clusters possess a total spin magnetic moment going from 0 to 2μB, except for RhGe2 with 3μB. These results open nice perspectives of these good candidate clusters for applications in nanoelectronics and nanotechnologies.
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Affiliation(s)
- Meriem Benaida
- Laboratoire de Développement des Energies Nouvelles et Renouvelables en Zones Aride, Université de Ouargla, 30000, Ouargla, Algeria.
| | - Kamal Eddine Aiadi
- Laboratoire de Développement des Energies Nouvelles et Renouvelables en Zones Aride, Université de Ouargla, 30000, Ouargla, Algeria
| | - Sofiane Mahtout
- Laboratoire de Physique Théorique, Faculté des Sciences Exactes, Université de Bejaia, 06000, Bejaia, Algeria
| | - Omar Bentouila
- Laboratoire de Développement des Energies Nouvelles et Renouvelables en Zones Aride, Université de Ouargla, 30000, Ouargla, Algeria
| | - Soumaia Djaadi
- Laboratoire de Développement des Energies Nouvelles et Renouvelables en Zones Aride, Université de Ouargla, 30000, Ouargla, Algeria
| | - Moussab Harb
- KAUST Catalysis Center (KCC), Physical Sciences and Engineering Division (PSE), King Abdullah University of Science and Technology (KAUST), Thuwal, 23955-6900, Saudi Arabia.
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11
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A combined molecular dynamics and quantum mechanics study on the interaction of Fe3+ and human serum albumin relevant to iron overload disease. J Mol Liq 2020. [DOI: 10.1016/j.molliq.2020.113933] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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12
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Tran VT, Tran QT. Electronic structures of
NbGe
n
−/0/+
(
n
= 1–3) clusters from multiconfigurational
CASPT2
and density matrix renormalization group
‐CASPT2
calculations. J Comput Chem 2020; 41:2641-2652. [DOI: 10.1002/jcc.26420] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2020] [Revised: 07/01/2020] [Accepted: 08/28/2020] [Indexed: 11/09/2022]
Affiliation(s)
- Van Tan Tran
- Theoretical and Physical Chemistry Division Dong Thap University Cao Lanh Dong Thap Vietnam
| | - Quoc Tri Tran
- Theoretical and Physical Chemistry Division Dong Thap University Cao Lanh Dong Thap Vietnam
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13
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Benaida M, Aiadi KE, Mahtout S, Harb M. Theoretical study of the physicochemical characteristics for Boron-Germanium BGen (n = 1–20) clusters. COMPUT THEOR CHEM 2020. [DOI: 10.1016/j.comptc.2020.112909] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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14
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The effect of palladium and platinum doping on the structure, stability and optical properties of germanium clusters: DFT study of PdGen and PtGen (n = 1–20) clusters. COMPUT THEOR CHEM 2020. [DOI: 10.1016/j.comptc.2020.112830] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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15
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Pham HT, Phan CTD, Nguyen MT, Tam NM. A remarkable mixture of germanium with phosphorus and arsenic atoms making stable pentagonal hetero-prisms [M@Ge5E5]+, E = P, As and M = Fe, Ru, Os. RSC Adv 2020; 10:19781-19789. [PMID: 35520435 PMCID: PMC9054236 DOI: 10.1039/d0ra01316a] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2020] [Accepted: 05/12/2020] [Indexed: 01/11/2023] Open
Abstract
A pentagonal hetero-prismatic structural motif was found for singly transition metal doped M@Ge5E5+ clusters, where the transition metal atom is located at the centre of a (5/5) Ge5E5 prism in which Ge is mixed with either P or As atoms. Structural characterization indicates that each (5/5) Ge5E5 prism is established by joining of two Ge3E2 and Ge2E3 strings in a prismatic fashion rather than two Ge5 and E5 strings. Each string results from a remarkable mixture of Ge and E atoms and contains only one E–E connection due to the fact that Ge–E bonds are much stronger than E–E connections. From the donor–acceptor perspective, the Ge5E5 tube donates electrons to the M center, which behaves as an acceptor. NBO atomic charge and ELI_D analyses demonstrate such electrostatic interactions of the M dopant with a Ge5E5+ tube which likely induce thermodynamic stability for the resulting M@Ge5E5+ cluster. CMO analysis illustrates that the conventional 18 electron count is recovered in the M@Ge5E5+ cations. Geometric shape of the lowest-energy structure M@Ge5E5+.![]()
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Affiliation(s)
- Hung Tan Pham
- Department of Chemistry
- KU Leuven
- B-3001 Leuven
- Belgium
| | - Cam-Tu Dang Phan
- Laboratory of Computational Chemistry and Modelling
- Quy Nhon University
- Quy Nhon
- Vietnam
| | - Minh Tho Nguyen
- Institute for Computational Science and Technology (ICST)
- Ho Chi Minh City
- Vietnam
| | - Nguyen Minh Tam
- Computational Chemistry Research Group
- Ton Duc Thang University
- Ho Chi Minh City
- Vietnam
- Faculty of Applied Sciences
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Pham HT, Dang CTP, Trung NT, Ngan VT. Transformation between Hexagonal Prism and Antiprism of the Singly and Doubly Cr-Doped Ge 12 Clusters. J Phys Chem A 2019; 123:10721-10729. [PMID: 31756105 DOI: 10.1021/acs.jpca.9b08052] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Structural transformation is a unique characteristic of atomic clusters, but it turns out very different from cluster to cluster. This theoretical study proves that the isomeric transformation between hexagonal prism and hexagonal antiprism is found for the doubly doped Cr2Ge12 cluster but not for singly doped CrGe12 cluster. We confirm that the ground state of CrGe12 is the distorted hexagonal prism C2h at the 3Bg triplet state instead of various shapes predicted in the previous studies. Upon comparison between the estimation at the B3P86/6-311+G(d) level of theory and the detachment energies measured by photoelectron spectroscopy, hexagonal antiprismatic shape is identified as the most stable isomer of the Cr2Ge12 cluster and it is easy to transform to the hexagonal prism-a less stable isomer by the rotation of the hexagonal rings. That is the first evidence for the structural transformation between a hexagonal prism and an antiprism of the germanium clusters, referring to the ability of Ge-based clusters in the formation of tubular geometry by doping Cr atoms. All the low-energy isomers of both Cr-doped germanium clusters have high magnetic moments. Interestingly, there is a tuning in magnetic properties of Cr2Ge12 from the ferromagnetism of the lowest-lying hexagonal antiprism to the ferrimagnetism of the higher-energy hexagonal prism. The stronger Cr-Cr bond and stronger interaction between the Cr2 moiety and the antiprism cage are accounted for by the higher stability of the hexagonal antiprismatic isomer.
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Affiliation(s)
- Hung Tan Pham
- Department of Chemistry , KU Leuven , 3000 Leuven , Belgium
| | - Cam-Tu Phan Dang
- Laboratory of Computational Chemistry and Modelling (LCCM), Department of Chemistry , Quy Nhon University , 170 An Duong Vuong , Quy Nhon City , Vietnam
| | - Nguyen Tien Trung
- Laboratory of Computational Chemistry and Modelling (LCCM), Department of Chemistry , Quy Nhon University , 170 An Duong Vuong , Quy Nhon City , Vietnam
| | - Vu Thi Ngan
- Laboratory of Computational Chemistry and Modelling (LCCM), Department of Chemistry , Quy Nhon University , 170 An Duong Vuong , Quy Nhon City , Vietnam
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17
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Structure, stability, and electronic properties of niobium-germanium and tantalum-germanium clusters. J Mol Model 2019; 25:113. [PMID: 30953156 DOI: 10.1007/s00894-019-3988-5] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2018] [Accepted: 03/13/2019] [Indexed: 10/27/2022]
Abstract
The structural, electronic and magnetic properties of niobium- and tantalum-doped germanium clusters MGen (M = Nb, Ta and n = 1-19) were investigated by first principles calculations within the density functional theory (DFT) approach. Growth pattern behaviors, stabilities, and electronic properties are presented and discussed. Endohedral cage-like structures in which the metal atom is encapsulated are favored for n ≥ 10. The doping metal atom contributes largely to strengthening the stability of the germanium cage-like structures, with binding energy ordered as follows BE(Gen + 1) < BE (VGen) < BE(NbGen) < BE(TaGen). Our results highlight the relative high stability of NbGe15, TaGe15 and VGe14. Graphical abstract Structure, stability, and electronic properties of niobium-germanium and tantalum-germanium clusters.
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18
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Insight into chemical bonding of the transition metal-doped cluster Ge2M (M = Sc–Zn) series using NBO and NRT theory. Theor Chem Acc 2018. [DOI: 10.1007/s00214-018-2326-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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19
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Tran VT, Tran QT. Spin State Energetics of VGe n -/0 (n = 5-7) Clusters and New Assignments of the Anion Photoelectron Spectra. J Comput Chem 2018; 39:2103-2109. [PMID: 30207608 DOI: 10.1002/jcc.25527] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2018] [Accepted: 06/24/2018] [Indexed: 01/20/2023]
Abstract
The geometrical structures, electron leading configurations, and relative energies of the low-lying states of VGe n -/0 (n = 5-7) clusters have been investigated with density functional theory and CASSCF/CASPT2 method. The pure GGA BP86 functional gave almost the same relative energy order for the low-lying states as the CASPT2 method. At the BP86 and CASPT2 levels, the ground states of VGe n -/0 (n = 5-7) clusters were proposed to be the 1 A1 and 2 A1 of A-VGe5 -/0 , 3 A″ and 2 A″, 2 A' (2 E2 ) of A-VGe6 -/0 , and 1 A' and 2 A' of A-VGe7 -/0 isomers. The adiabatic and vertical detachment energies (ADEs and VDEs) of the detachments of one electron from several orbitals of the anionic ground states were reported at the CASPT2 level. The calculated ADEs and VDEs corresponded well with the experimental values as observed in the 266 nm anion photoelectron spectra. © 2018 Wiley Periodicals, Inc.
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Affiliation(s)
- Van Tan Tran
- Theoretical and Physical Chemistry Division, Dong Thap University, 783-Pham Huu Lau, Ward 6, Cao Lanh City, Dong Thap, Vietnam
| | - Quoc Tri Tran
- Theoretical and Physical Chemistry Division, Dong Thap University, 783-Pham Huu Lau, Ward 6, Cao Lanh City, Dong Thap, Vietnam
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20
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Borshch NA, Kurganskii SI. Anionic Germanium–Niobium Clusters: Atomic Structure, Mechanisms of Cluster Formation, and Electronic Spectra. RUSSIAN JOURNAL OF PHYSICAL CHEMISTRY A 2018. [DOI: 10.1134/s0036024418090078] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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21
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Liang X, Kong X, Lu SJ, Huang Y, Zhao J, Xu HG, Zheng W, Zeng XC. Structural evolution and magnetic properties of anionic clusters Cr 2Ge n (n = 3-14): photoelectron spectroscopy and density functional theory computation. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2018; 30:335501. [PMID: 29995644 DOI: 10.1088/1361-648x/aad2bf] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
The structural, electronic and magnetic properties of dual Cr atoms doped germanium anionic clusters, [Formula: see text] (n = 3-14), have been investigated by using photoelectron spectroscopy in combination with density-functional theory calculations. The low-lying structures of [Formula: see text] are determined by DFT based genetic algorithm optimization. For [Formula: see text] with n ⩽ 8, the structures are bipyramid-based geometries, while [Formula: see text] cluster has an opening cage-like structure, and the half-encapsulated structure is gradually covered by the additional Ge atoms to form closed-cage configuration with one Cr atom interior for n = 10 to 14. Meanwhile, the two Cr atoms in [Formula: see text] clusters tend to form a Cr-Cr bond rather than be separated. Interestingly, the magnetic moment of all the anionic clusters considered is 1 μ B. Almost all clusters exhibit antiferromagnetic Cr-Cr coupling, except for two clusters, [Formula: see text] and [Formula: see text]. To our knowledge, the [Formula: see text] cluster is the first kind of transition-metal doped semiconductor clusters that exhibit relatively stable antiferromagnetism within a wide size range. The experimental/theoretical results suggest high potential to modify the magnetic behavior of semiconductor clusters through introducing different transition-metal dopant atoms.
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Affiliation(s)
- Xiaoqing Liang
- Key Laboratory of Materials Modification by Laser, Ion and Electron Beams, Dalian University of Technology, Ministry of Education, Dalian 116024, People's Republic of China. Department of Chemistry, University of Nebraska, Lincoln, NE 68588, United States of America
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22
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The possibility of iron chelation therapy in the presence of different HPOs; a molecular approach to the non-covalent interactions and binding energies. J Mol Struct 2018. [DOI: 10.1016/j.molstruc.2018.04.065] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
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23
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Deng XJ, Kong XY, Liang X, Yang B, Xu HG, Xu XL, Feng G, Zheng WJ. Structural and magnetic properties of FeGe n-/0 (n = 3-12) clusters: Mass-selected anion photoelectron spectroscopy and density functional theory calculations. J Chem Phys 2018; 147:234310. [PMID: 29272919 DOI: 10.1063/1.5000886] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The structural, electronic, and magnetic properties of FeGen-/0 (n = 3-12) clusters were investigated by using anion photoelectron spectroscopy in combination with density functional theory calculations. For both anionic and neutral FeGen (n = 3-12) clusters with n ≤ 7, the dominant structures are exohedral. The FeGe8-/0 clusters have half-encapsulated boat-shaped structures, and the opening of the boat-shaped structure is gradually covered by the additional Ge atoms to form Gen cage from n = 9 to 11. The structures of FeGe10-/0 can be viewed as two Ge atoms symmetrically capping the opening of the boat-shaped structure of FeGe8, and those of FeGe12-/0 are distorted hexagonal prisms with the Fe atom at the center. Natural population analysis shows that there is an electron transfer from the Ge atoms to the Fe atom at n = 8-12. The total magnetic moment of FeGen-/0 and local magnetic moment of the Fe atom have not been quenched.
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Affiliation(s)
- Xiao-Jiao Deng
- Beijing National Laboratory for Molecular Sciences, State Key Laboratory of Molecular Reaction Dynamics, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
| | - Xiang-Yu Kong
- Beijing National Laboratory for Molecular Sciences, State Key Laboratory of Molecular Reaction Dynamics, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
| | - Xiaoqing Liang
- Key Laboratory of Materials Modification by Laser, Ion, and Electron Beams, Dalian University of Technology, Ministry of Education, Dalian 116024, China
| | - Bin Yang
- Beijing National Laboratory for Molecular Sciences, State Key Laboratory of Molecular Reaction Dynamics, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
| | - Hong-Guang Xu
- Beijing National Laboratory for Molecular Sciences, State Key Laboratory of Molecular Reaction Dynamics, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
| | - Xi-Ling Xu
- Beijing National Laboratory for Molecular Sciences, State Key Laboratory of Molecular Reaction Dynamics, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
| | - Gang Feng
- Beijing National Laboratory for Molecular Sciences, State Key Laboratory of Molecular Reaction Dynamics, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
| | - Wei-Jun Zheng
- Beijing National Laboratory for Molecular Sciences, State Key Laboratory of Molecular Reaction Dynamics, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
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24
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Mahtout S, Siouani C, Rabilloud F. Growth Behavior and Electronic Structure of Noble Metal-Doped Germanium Clusters. J Phys Chem A 2018; 122:662-677. [PMID: 29257877 DOI: 10.1021/acs.jpca.7b09887] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Structures, energetics, and electronic properties of noble metal-doped germanium (MGen with M = Cu, Ag, Au; n = 1-19) clusters are systematically investigated by using the density functional theory (DFT) approach. The endohedral structures in which the metal atom is encapsulated inside of a germanium cage appear at n = 10 when the dopant is Cu and n = 12 for M = Ag and Au. While Cu doping enhances the stability of the corresponding germanium frame, the binding energies of AgGen and AuGen are always lower than those of pure germanium clusters. Our results highlight the great stability of the CuGe10 cluster in a D4d structure and, to a lesser extent, that of AgGe15 and AuGe15, which exhibits a hollow cage-like geometry. The sphere-type geometries obtained for n = 10-15 present a peculiar electronic structure in which the valence electrons of the noble metal and Ge atoms are delocalized and exhibit a shell structure associated with the quasi-spherical geometry. It is found that the coinage metal is able to give both s- and d-type electrons to be reorganized together with the valence electrons of Ge atoms through a pooling of electrons. The cluster size dependence of the stability, the frontier orbital energy gap, the vertical ionization potentials, and electron affinities are given.
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Affiliation(s)
- Sofiane Mahtout
- Laboratoire de Physique Théorique, Faculté des Sciences Exactes, Université de Bejaia , 06000 Bejaia, Algérie
| | - Chaouki Siouani
- Laboratoire de Physique Théorique, Faculté des Sciences Exactes, Université de Bejaia , 06000 Bejaia, Algérie
| | - Franck Rabilloud
- Univ Lyon, Université Claude Bernard Lyon 1, CNRS, Institut Lumière Matière , F-69622 Villeurbanne, France
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25
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Tran VT, Nguyen MT, Tran QT. Computational Investigation of the Geometrical and Electronic Structures of VGe n-/0 (n = 1-4) Clusters by Density Functional Theory and Multiconfigurational CASSCF/CASPT2 Method. J Phys Chem A 2017; 121:7787-7796. [PMID: 28930457 DOI: 10.1021/acs.jpca.7b08351] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Density functional theory and the multiconfigurational CASSCF/CASPT2 method have been employed to study the low-lying states of VGen-/0 (n = 1-4) clusters. For VGe-/0 and VGe2-/0 clusters, the relative energies and geometrical structures of the low-lying states are reported at the CASSCF/CASPT2 level. For the VGe3-/0 and VGe4-/0 clusters, the computational results show that due to the large contribution of the Hartree-Fock exact exchange, the hybrid B3LYP, B3PW91, and PBE0 functionals overestimate the energies of the high-spin states as compared to the pure GGA BP86 and PBE functionals and the CASPT2 method. On the basis of the pure GGA BP86 and PBE functionals and the CASSCF/CASPT2 results, the ground states of anionic and neutral clusters are defined, the relative energies of the excited states are computed, and the electron detachment energies of the anionic clusters are evaluated. The computational results are employed to give new assignments for all features in the photoelectron spectra of VGe3- and VGe4- clusters.
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Affiliation(s)
- Van Tan Tran
- Theoretical and Physical Chemistry Division, Dong Thap University , Cao Lanh City, Dong Thap 870200, Vietnam
| | - Minh Thao Nguyen
- Theoretical and Physical Chemistry Division, Dong Thap University , Cao Lanh City, Dong Thap 870200, Vietnam.,Department of Chemistry, University of Science, Vietnam National University - Ho Chi Minh City , Ho Chi Minh City 748000, Vietnam
| | - Quoc Tri Tran
- Theoretical and Physical Chemistry Division, Dong Thap University , Cao Lanh City, Dong Thap 870200, Vietnam
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26
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Pham LN, Nguyen MT. Insights into Geometric and Electronic Structures of VGe 3-/0 Clusters from Anion Photoelectron Spectrum Assignment. J Phys Chem A 2017; 121:6949-6956. [PMID: 28845661 DOI: 10.1021/acs.jpca.7b07459] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The global minima of both neutral and anionic clusters of VGe3-/0 were determined using different quantum chemical methods (DFT, RCCSD(T), CASSCF/CASPT2). On the basis of the ground states identified, most excited bands in the anion photoelectron spectrum of VGe3- were assigned. The tetrahedral isomers of both charged states are the most stable ones. A singlet state (Cs, 1A') of the tetrahedral isomer has the globally lowest energy on the potential hypersurface of VGe3-. Two states 12A' and 12A″ of the neutral tetrahedral isomer are nearly degenerate and identified as the competing ground state of VGe3. From the anionic ground state, four of five bands in the anion photoelectron spectrum of VGe3- were determined to be the consequences of one-electron transitions starting from the anionic ground state 1A'. Both nearly degenerate neutral ground states are responsible for generation of the first band. Two different transitions from the anionic ground state 1A' to the first two nearly degenerate excited states (22A' and 22A″) of the neutral underlie the second lowest ionization band. Two higher levels of ionization recorded in the spectrum were assigned to the two higher excited states 42A' and 52A' of the neutral. Franck-Condon factor simulations of the first band were performed to obtain more insights into the experimental bands of the spectrum.
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Affiliation(s)
- Le Nhan Pham
- Department of Chemistry, KU Leuven , Celestijnenlaan 200F, B-3001 Leuven, Belgium
| | - Minh Tho Nguyen
- Computational Chemistry Research Group, Ton Duc Thang University , 700000 Ho Chi Minh City, Vietnam.,Faculty of Applied Sciences, Ton Duc Thang University , 700000 Ho Chi Minh City, Vietnam.,Department of Chemistry, KU Leuven , Celestijnenlaan 200F, B-3001 Leuven, Belgium
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27
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Pham HT, Nguyen MT. Theoretical Investigation of Metallic Heterofullerenes of Silicon and Germanium Mixed with Phosphorus and Arsenic Atoms M-A8E6, A = Si, Ge; E = P, As; and M = Cr, Mo, W. J Phys Chem A 2017; 121:5056-5066. [DOI: 10.1021/acs.jpca.7b04631] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Hung Tan Pham
- Computational Chemistry
Research Group, Ton Duc Thang University, Ho Chi Minh City, Vietnam
- Faculty of Applied Sciences, Ton Duc Thang University, Ho Chi Minh City, Vietnam
| | - Minh Tho Nguyen
- Computational Chemistry
Research Group, Ton Duc Thang University, Ho Chi Minh City, Vietnam
- Faculty of Applied Sciences, Ton Duc Thang University, Ho Chi Minh City, Vietnam
- Department of Chemistry, KU Leuven, Celestijnenlaan
200F, B-3001 Leuven, Belgium
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28
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Siouani C, Mahtout S, Safer S, Rabilloud F. Structure, Stability, and Electronic and Magnetic Properties of VGe n (n = 1-19) Clusters. J Phys Chem A 2017; 121:3540-3554. [PMID: 28415843 DOI: 10.1021/acs.jpca.7b00881] [Citation(s) in RCA: 37] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
We systematically study the equilibrium geometries and electronic and magnetic properties of Gen+1 and VGen (n = 1-19) clusters using the density functional theory approach within the generalized gradient approximation. Endohedral structures in which the vanadium atom is encapsulated inside a Gen cage are predicted to be favored for n ≥ 10. The dopant V atom in the Gen clusters has not an immediate effect on the stability of small germanium clusters (n < 6), but it largely contributes to strengthen the stability for n ≥ 7. Our study enhances the large stability of the VGe14 cluster, which presents an Oh symmetry cagelike geometry and a peculiar electronic structure in which the valence electrons of V and Ge atoms are delocalized and exhibit a shell structure associated with the quasi-spherical geometry. Consequently, this cluster is proposed to be a good candidate to be used as the building blocks for developing new materials. The cluster size dependence of the stability, the vertical ionization potentials, and electron affinities of Gen+1 and VGen are presented. Magnetic properties and the partial density of states of the most stable VGen clusters are also discussed.
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Affiliation(s)
- C Siouani
- Laboratoire de Physique Théorique, Faculté des Sciences Exactes, Université de Bejaia , 06000 Bejaia, Algérie
| | - S Mahtout
- Laboratoire de Physique Théorique, Faculté des Sciences Exactes, Université de Bejaia , 06000 Bejaia, Algérie
| | - S Safer
- Laboratoire de Physique Théorique, Faculté des Sciences Exactes, Université de Bejaia , 06000 Bejaia, Algérie
| | - F Rabilloud
- Univ Lyon, Université Claude Bernard Lyon 1, CNRS, Institut Lumière Matière , F-69622 Villeurbanne, France
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29
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Fioressi SE, Bacelo DE. Structures and energetics of Be nGe n ( n = 1–5) and Be 2nGe n ( n = 1–4) clusters. Mol Phys 2017. [DOI: 10.1080/00268976.2017.1303204] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Affiliation(s)
- Silvina E. Fioressi
- Departamento de Química, Facultad de Ciencias Exactas y Naturales, Universidad de Belgrano, Buenos Aires, Argentina
| | - Daniel E. Bacelo
- Departamento de Química, Facultad de Ciencias Exactas y Naturales, Universidad de Belgrano, Buenos Aires, Argentina
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30
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Pham LN, Nguyen MT. Titanium Digermanium: Theoretical Assignment of Electronic Transitions Underlying Its Anion Photoelectron Spectrum. J Phys Chem A 2017; 121:1940-1949. [PMID: 28211685 DOI: 10.1021/acs.jpca.7b00245] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Electronic structures of both the anionic and neutral triatomic species TiGe2-/0 were theoretically studied employing single-reference (DFT and RCCSD(T)) and multiconfigurational (CASSCF/CASPT2 and CASSCF/NEVPT2) methods with large basis sets. The ground state of TiGe2- (C2v) was identified to be 4B1, but the 2A1 state is nearly degenerate, whereas the 3B1 is clearly the ground state of the neutral TiGe2 (C2v). On the basis of the computed ground and excited states of both neutral and anionic structures, all electronic transitions giving rise to experimental anion photoelectron bands in the spectrum of TiGe2- can now be assigned. The X band of the anion photoelectron spectrum is attributed to a one-electron transition between two ground states 4B1 → 3B1. Three neutral excited states 23A2, 25B1, and 35B1 are energetically responsible for the B band upon one-electron photodetachement from the anionic ground state 4B1. The C band is assigned to the transition 4B1 → 25A1. A transition from the nearly degenerate ground state 2A1 of the anion to the low-spin 1A1 of the final neutral state can be ascribed to the A band. Furthermore, the first two bands' progressions, whose normal vibrational modes were accessible from CASSCF/CASPT2 calculations, were also simulated by determination of multidimensional Franck-Condon factors.
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Affiliation(s)
- Le Nhan Pham
- Department of Chemistry, KU Leuven , Celestijnenlaan 200F, B-3001 Leuven, Belgium
| | - Minh Tho Nguyen
- Computational Chemistry Research Group, Ton Duc Thang University , Ho Chi Minh City, 778000 Vietnam.,Faculty of Applied Sciences, Ton Duc Thang University , Ho Chi Minh City, 778000 Vietnam.,Department of Chemistry, KU Leuven , Celestijnenlaan 200F, B-3001 Leuven, Belgium
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31
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Pham LN, Nguyen MT. Electronic Structure of Neutral and Anionic Scandium Disilicon ScSi2–/0 Clusters and the Related Anion Photoelectron Spectrum. J Phys Chem A 2016; 120:9401-9410. [DOI: 10.1021/acs.jpca.6b09067] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Le Nhan Pham
- Department
of Chemistry, KU Leuven, Celestijnenlaan 200F, B-3001Leuven, Belgium
| | - Minh Tho Nguyen
- Computational
Chemistry Research Group, Ton Duc Thang University, Ho Chi Minh City, Vietnam
- Faculty
of Applied Sciences, Ton Duc Thang University, Ho Chi Minh City, Vietnam
- Department
of Chemistry, KU Leuven, Celestijnenlaan 200F, B-3001Leuven, Belgium
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32
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Probing chemical bonding and optoelectronic properties of Square-Planar Aluminum, Gallium, and Nickel complexes. COMPUT THEOR CHEM 2016. [DOI: 10.1016/j.comptc.2016.06.016] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
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33
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Sharma V, Pahuja A, Srivastava S. Spin-polarised DFT study of cobalt-doped gallium clusters. Mol Phys 2016. [DOI: 10.1080/00268976.2015.1136004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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34
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Growth behavior and electronic structure of neutral and anion ZrGe n ( n = 1–21) clusters. COMPUT THEOR CHEM 2016. [DOI: 10.1016/j.comptc.2015.11.013] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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35
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A computational investigation of aluminum-doped germanium clusters by density functional theory study. COMPUT THEOR CHEM 2015. [DOI: 10.1016/j.comptc.2014.12.004] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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36
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Deng XJ, Kong XY, Xu XL, Xu HG, Zheng WJ. Structural and magnetic properties of CoGe(n)- (n=2-11) clusters: photoelectron spectroscopy and density functional calculations. Chemphyschem 2014; 15:3987-93. [PMID: 25294751 DOI: 10.1002/cphc.201402615] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2014] [Indexed: 11/08/2022]
Abstract
A series of cobalt-doped germanium clusters, CoGe(n)(-/0) (n=2-11), are investigated by using anion photoelectron spectroscopy combined with density functional theory calculations. For both anionic and neutral CoGe(n) (n=2-11) clusters, the critical size of the transition from exo- to endohedral structures is n=9. Natural population analysis shows that there is electron transfer from the Ge(n) framework to the Co atom at n=7-11 for both anionic and neutral CoGe(n) clusters. The magnetic moments of the anionic and neutral CoGe(n) clusters decrease to the lowest values at n=10 and 11. The transfer of electrons from the Gen framework to the Co atom and the minimization of the magnetic moments are related to the evolution of CoGe(n) structures from exo- to endohedral.
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Affiliation(s)
- Xiao-Jiao Deng
- State Key Laboratory of Molecular Reaction Dynamics, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190 (P.R. China)
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37
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Trivedi R, Dhaka K, Bandyopadhyay D. Study of electronic properties, stabilities and magnetic quenching of molybdenum-doped germanium clusters: a density functional investigation. RSC Adv 2014. [DOI: 10.1039/c4ra11825a] [Citation(s) in RCA: 54] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
The evolution of electronic structures, properties and stabilities of neutral and cationic molybdenum encapsulated germanium clusters (Mo@Gen, n = 1 to 20) has been investigated.
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Affiliation(s)
- Ravi Trivedi
- Department of Physics
- Birla Institute of Technology and Science
- Pilani, India
| | - Kapil Dhaka
- Department of Physics
- Birla Institute of Technology and Science
- Pilani, India
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38
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De Haeck J, Tai TB, Bhattacharyya S, Le HT, Janssens E, Nguyen MT, Lievens P. Structures and ionization energies of small lithium doped germanium clusters. Phys Chem Chem Phys 2013; 15:5151-62. [DOI: 10.1039/c3cp44395g] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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39
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Jiang W, DeYonker NJ, Determan JJ, Wilson AK. Toward accurate theoretical thermochemistry of first row transition metal complexes. J Phys Chem A 2011; 116:870-85. [PMID: 22107449 DOI: 10.1021/jp205710e] [Citation(s) in RCA: 113] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Abstract
The recently developed correlation consistent Composite Approach for transition metals (ccCA-TM) was utilized to compute the thermochemical properties for a collection of 225 inorganic molecules containing first row (3d) transition metals, ranging from the monohydrides to larger organometallics such as Sc(C(5)H(5))(3) and clusters such as (CrO(3))(3). Ostentatiously large deviations of ccCA-TM predictions stem mainly from aging and unreliable experimental data. For a subset of 70 molecules with reported experimental uncertainties less than or equal to 2.0 kcal mol(-1), regardless of the presence of moderate multireference character in some molecules, ccCA-TM achieves transition metal chemical accuracy of ±3.0 kcal mol(-1) as defined in our earlier work [J. Phys. Chem. A2007, 111, 11269-11277] by giving a mean absolute deviation of 2.90 kcal mol(-1) and a root-mean-square deviation of 3.91 kcal mol(-1). As subsets are constructed with decreasing upper limits of reported experimental uncertainties (5.0, 4.0, 3.0, 2.0, and 1.0 kcal mol(-1)), the ccCA-TM mean absolute deviations were observed to monotonically drop off from 4.35 to 2.37 kcal mol(-1). In contrast, such a trend is missing for DFT methods as exemplified by B3LYP and M06 with mean absolute deviations in the range 12.9-14.1 and 10.5-11.0 kcal mol(-1), respectively. Salient multireference character, as demonstrated by the T(1)/D(1) diagnostics and the weights (C(0)(2)) of leading electron configuration in the complete active self-consistent field wave function, was found in a significant amount of molecules, which can still be accurately described by the single reference ccCA-TM. The ccCA-TM algorithm has been demonstrated as an accurate, robust, and widely applicable model chemistry for 3d transition metal-containing species with versatile bonding features.
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Affiliation(s)
- Wanyi Jiang
- Center for Advanced Scientific Computing and Modeling (CASCaM), Department of Chemistry, University of North Texas, Denton, Texas 76203-5070, USA
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40
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Tai TB, Tam NM, Nguyen MT. Evolution of structures and stabilities of zinc-doped tin clusters SnnZn, n=1–12. Three-dimensional aromaticity of the magic clusters Sn10Zn and Sn12Zn. Chem Phys 2011. [DOI: 10.1016/j.chemphys.2011.06.041] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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41
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Tai TB, Nguyen MT. Enhanced Stability by Three-Dimensional Aromaticity of Endohedrally Doped Clusters X10M0/– with X = Ge, Sn, Pb and M = Cu, Ag, Au. J Phys Chem A 2011; 115:9993-9. [DOI: 10.1021/jp111324n] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Truong Ba Tai
- Department of Chemistry, Katholieke Universiteit Leuven, B-3001 Leuven, Belgium
| | - Minh Tho Nguyen
- Department of Chemistry, Katholieke Universiteit Leuven, B-3001 Leuven, Belgium
- Institute for Computational Science and Technology of HoChiMinhCity, Thu Duc, HoChiMinh City, Vietnam
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42
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Kumar M, Bhattacharyya N, Bandyopadhyay D. Architecture, electronic structure and stability of TM@Ge(n) (TM = Ti, Zr and Hf; n = 1-20) clusters: a density functional modeling. J Mol Model 2011; 18:405-18. [DOI: 10.1007/s00894-011-1122-4] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2011] [Accepted: 05/09/2011] [Indexed: 10/18/2022]
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43
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Tai TB, Nguyen MT. A Stochastic Search for the Structures of Small Germanium Clusters and Their Anions: Enhanced Stability by Spherical Aromaticity of the Ge10 and Ge12(2-) Systems. J Chem Theory Comput 2011; 7:1119-30. [PMID: 26606360 DOI: 10.1021/ct1006482] [Citation(s) in RCA: 85] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Abstract
Investigations on germanium clusters in the neutral, anionic, and dianion states Gen(x) (n = 2-12 and x = 0, -1, -2) are performed using quantum chemical calculations with the B3LYP functional and the coupled-cluster singles and doubles [CCSD(T)] methods, in conjunction with the 6-311+G(d) basis set. An improved stochastic method is implemented for searching the low-lying isomers of clusters. Comparison of our results with previous reports on germanium clusters shows the efficiency of the search method. The Ge8 system is presented in detail. The anionic clusters Gen(-/2-) are studied theoretically and systematically for the first time, and their energetics are in good agreement with available experiments. The clusters Ge10, Ge10(2-), and Ge12(2-) are, in their ground state, characterized by large highest occupied molecular orbital-lowest unoccupied molecular orbital gaps, high vertical and adiabatic detachment energies, and substantial average binding energies. The enhanced stability of these magic clusters can consistently be rationalized using the jellium electron shell model and the spherical aromatic character.
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Affiliation(s)
- Truong Ba Tai
- Department of Chemistry, and LMCC-Mathematical Modeling and Computational Science Center, Katholieke Universiteit Leuven , B-3001 Leuven, Belgium
| | - Minh Tho Nguyen
- Department of Chemistry, and LMCC-Mathematical Modeling and Computational Science Center, Katholieke Universiteit Leuven , B-3001 Leuven, Belgium.,Institute for Computational Science and Technology , Thu Duc, Ho Chi Minh City, Vietnam
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Zhao WJ, Wang YX. Geometries, stabilities, and magnetic properties of MnGen (n=2–16) clusters: Density-functional theory investigations. ACTA ACUST UNITED AC 2009. [DOI: 10.1016/j.theochem.2008.12.039] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Gopakumar G, Ngan VT, Lievens P, Nguyen MT. Electronic Structure of Germanium Monohydrides GenH, n = 1−3. J Phys Chem A 2008; 112:12187-95. [DOI: 10.1021/jp805173n] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Affiliation(s)
- G. Gopakumar
- Department of Chemistry, Laboratory of Solid State Physics and Magnetism, and Institute for Nanoscale Physics and Chemistry (INPAC), University of Leuven, B-3001 Leuven, Belgium
| | - Vu Thi Ngan
- Department of Chemistry, Laboratory of Solid State Physics and Magnetism, and Institute for Nanoscale Physics and Chemistry (INPAC), University of Leuven, B-3001 Leuven, Belgium
| | - Peter Lievens
- Department of Chemistry, Laboratory of Solid State Physics and Magnetism, and Institute for Nanoscale Physics and Chemistry (INPAC), University of Leuven, B-3001 Leuven, Belgium
| | - Minh Tho Nguyen
- Department of Chemistry, Laboratory of Solid State Physics and Magnetism, and Institute for Nanoscale Physics and Chemistry (INPAC), University of Leuven, B-3001 Leuven, Belgium
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Geometries, stabilities, and electronic properties of (n=9–16) clusters: Density-functional theory investigations. Chem Phys 2008. [DOI: 10.1016/j.chemphys.2008.07.006] [Citation(s) in RCA: 55] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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