Electronic Structure of the Acetonitrile and Acetonitrile Dimer Anions: A Topological Investigation

Exploring the solubility and intermolecular interactions of biologically significant amino acids l-serine and L-cysteine in binary mixtures of H2O + DMF, H2O + DMSO and H2O + ACN in temperature range from T = 288.15 K to 308.15 K

In the presented work, a study on the solubility and intermolecular interactions of l-serine and L-cysteine was carried out in binary mixtures of H2O + dimethylformamide (DMF), H2O + dimethylsulfoxide (DMSO), and H2O + acetonitrile (ACN) in the temperature range of T = 288.15 K to 308.15 K. l-serine exhibited the highest solubility in water, while L-cysteine was more soluble in water-DMF. The solvation process was assessed through standard Gibbs energy calculations, indicating the solvation stability order: water-ACN > water-DMSO > water-DMF for l-serine, and water-DMF > water-DMSO > water-ACN for L-cysteine. This study also explored the influence of these amino acids on solvent-solvent interactions, revealing changes in chemical entropies and self-association patterns within the binary solvent mixtures.

Probing pharmaceutically important amino acids L-isoleucine and L-tyrosine Solubilities: Unraveling the solvation thermodynamics in diverse mixed solvent systems

The study specifically investigates the solubilities of L-isoleucine and L-tyrosine in water-mixed solvent systems (DMF, DMSO, and ACN), exploring the behaviour of amino acids in complex environments. The experimental methods prioritize meticulous solvent purification to ensure reliable results. The work explores solubility data, uncovering temperature-dependent trends and intricate interactions influencing solubility in the chosen mixed solvent systems. The study emphasizes the impact of thermodynamic properties, solvent-solvent interactions, and amino acid structure on solubility patterns. The broader implications highlight the relevance of understanding amino acid behaviour in diverse solvent environments, offering potential applications in cosmetics and pharmaceutical industries. The distinct solubility patterns contribute valuable insights, enhancing on the understanding of the solution stability and interactions of L-isoleucine and L-tyrosine in different solvent systems. In conclusion, work suggests the enhanced utilization of L-isoleucine and L-tyrosine in various industries, driven by a profound understanding of their solubility in mixed solvent systems. The research expands our knowledge of amino acid behaviour, paving the way for advancements in industries relying on protein-based products and technologies.

Sensing Magnetic Field and Intermolecular Interactions in Diamagnetic Solution Using Residual Dipolar Couplings of Zephycandidine

An unusual residual dipolar coupling of methylene protons was recorded in NMR spectra because aromatic zephycandidine has preferential orientation at the external magnetic field. The observed splitting contains contribution from the dipole-dipole D-coupling and the anisotropic component of J-coupling. Absolute values of the anisotropy of magnetic susceptibility |Δχ_ax| are larger for protic solvents because of the hydrogen-bonding compared to aprotic solvents for which polar and dispersion forces are more important. The energy barrier for the reorientation due to hydrogen-bonding is 1.22 kJ/mol in methanol-d_4, 0.85 kJ/mol in ethanol-d₆ and 0.87 kJ/mol in acetic acid-d₆. In dimethyl sulfoxide-d₆, 1.08 kJ/mol corresponds to the interaction of solvent lone pair electrons with π-electrons of zephycandidine. This energy barrier decreases for acetone-d₆ which has smaller electric dipole moment. In acetonitrile-d₃, there is no energy barrier which suggests solvent ordering around the solute due to the solvent-solvent interactions. The largest absolute values of the magnetic anisotropy are observed for aromatic benezene-d₆ and tolune-d₈ which have their own preferential orientation and enhance the order in the solution. The magnetic anisotropy of "isolated" zephycandidine, not hindered by intermolecular interaction could be estimated from the correlation between Δχ_ax and cohesion energy density.

Solvated Electron in Acetonitrile: Radiation Yield, Absorption Spectrum, and Equilibrium between Cavity- and Solvent-Localized States

The equilibrium between a solvent cavity-localized electron, e_cav^-, and a dimeric solvent anion, (CH₃CN)₂^•-, which are the two lowest energy states of the solvated electron in acetonitrile, has been investigated by pulse radiolysis at 233-353 K. The enthalpy and entropy for the e_cav^- to (CH₃CN)₂^•- conversion amount to -11.2 ± 0.3 kcal/mol and -39.3 ± 1.2 cal/(mol K), corresponding to a 0.44 ± 0.35 equilibrium constant at 25 °C. The radiation yield of the solvated electron has been quantified using a Co(II) macrocycle that scavenges electrons with a 1.55 × 10¹¹ M^-1 s^-1 rate constant. The apparent yield increases without saturation over the attainable scavenger concentration range, reaching 2.8 per 100 eV; this value represents the lower limit for the acetonitrile ionization yield in pulse radiolysis. The apparent molar absorption coefficient of (20.8 ± 1.5) × 10³ M^-1 cm^-1 at 1450 nm and 20 °C for the solvated electron and individual vis-near-infrared (NIR) absorption spectra of e_cav^- and (CH₃CN)₂^•- are derived from the data. Variances with previous reports are thoroughly discussed. Collectively, these results resolve several controversies concerning the solvated electron properties in acetonitrile and furnish requisite data for quantitative pulse radiolysis investigations in this commonly used solvent.

The electron attachment effect on the structure and properties of ortho-hydroxyaryl Schiff and Mannich bases - the hydrogen/proton transfer processes

The attachment of electrons is known to significantly influence some chemical and biological processes. The chemical differences between Schiff and Mannich bases are characterized by strong intramolecular hydrogen bonds, resulting from the presence of, respectively, single or double carbon-nitrogen bonds in the chelate rings. Differences are especially visible in the hydrogen transfer processes from molecular (O-H⋯N) to the proton transfer (O⋯H-N) forms. The reaction in a Schiff base occurs as an ordinary hydrogen transfer from a donor to an acceptor, while in a Mannich base the transfer of hydrogen occurs simultaneously with a C-N bond scission leading to an intermolecular complex. The attachment of electrons preserves the overall structural topology of the reactants; however, due to differences in electron affinities, reactions switch from endothermic to exothermic and reaction rates in the anionic systems are significantly higher. The difference in electron affinities for particular reactants comes from the fundamental differences in electron binding mechanisms, leading to the valence-bound or dipole-bound states. The observed mechanisms are closely related to the nature and size of the LUMOs of the parent molecules. The transition state of the Mannich base corresponds to the σ and π orbital conversion and possesses the characteristics of the valence-bound state and the dipole-bound electronic state.

Ab Initio Simulations of Poorly and Well Equilibrated (CH3CN)n- Cluster Anions: Assigning Experimental Photoelectron Peaks to Surface-Bound Electrons and Solvated Monomer and Dimer Anions

Excess electrons in liquid acetonitrile are of particular interest because they exist in two different forms in equilibrium: they can be present as traditional solvated electrons in a cavity, and they can form some type of solvated molecular anion. Studies of small acetonitrile cluster anions in the gas phase show two isomers with distinct vertical detachment energies, and it is tempting to presume that the two gas-phase cluster anion isomers are precursors of the two excess electron species present in bulk solution. In this paper, we perform DFT-based ab initio molecular dynamics simulations of acetonitrile cluster anions to understand the electronic species that are present and why they have different binding energies. Using a long-range-corrected density functional that was optimally tuned to describe acetonitrile cluster anion structures, we have theoretically explored the chemistry of (CH₃CN)_n^- cluster anions with sizes n = 5, 7, and 10. Because the temperature of the experimental cluster anions is not known, we performed two sets of simulations that investigated how the way in which the cluster anions are prepared affects the excess electron binding motif: one set of simulations simply attached excess electrons to neutral (CH₃CN)_n clusters, providing little opportunity for the clusters to relax in the presence of the excess electron, while the other set allowed the cluster anions to thermally equilibrate near room temperature. We find that both sets of simulations show three distinct electron binding motifs: electrons can attach to the surface of the cluster (dipole-bound) or be present either as solvated monomer anions, CH₃CN^-, or as solvated molecular dimer anions, (CH₃CN)₂^-. All three species have higher binding energies at larger cluster sizes. Thermal equilibration strongly favors the formation of the valence-bound molecular anions relative to surface-bound excess electrons, and the dimer anion becomes more stable than the monomer anion and surface-bound species as the cluster size increases. The calculated photoelectron spectra from our simulations in which there was poor thermal equilibration are in good agreement with experiment, suggesting assignment of the two experimental cluster anion isomers as the surface-bound electron and the solvated molecular dimer anion. The simulations also suggest that the shoulder seen experimentally on the low-energy isomer's detachment peak is not part of a vibronic progression but instead results from molecular monomer anions. Nowhere in the size range that we explore do we see evidence for a nonvalence, cavity-bound interior-solvated electron, indicating that this species is likely only accessible at larger sizes with good thermal equilibration.

Radical Ions of 3-Styryl-quinoxalin-2-one Derivatives Studied by Pulse Radiolysis in Organic Solvents

The absorption-spectral and kinetic behaviors of radical ions and neutral hydrogenated radicals of seven 3-styryl-quinoxalin-2(1 H)-one (3-SQ) derivatives, one without substituents in the styryl moiety, four others with electron-donating (R = -CH₃, -OCH₃, and -N(CH₃)₂) or electron-withdrawing (R = -OCF₃) substituents in the para position in their benzene ring, and remaining two with double methoxy substituents (-OCH₃), however, at different positions (meta/para and ortho/meta) have been studied by UV-vis spectrophotometric pulse radiolysis in neat acetonitrile saturated with argon (Ar) and oxygen (O₂) and in 2-propanol saturated with Ar, at room temperature. In acetonitrile solutions, the radical anions (4R-SQ^•-) are characterized by two absorption maxima located at λ_max = 470-490 nm and λ_max = 510-540 nm, with the respective molar absorption coefficients ε_470-490 = 8500-13 100 M^-1 cm^-1 and ε_510-540 = 6100-10 300 M^-1 cm^-1, depending on the substituent (R). All 4R-SQ^•- decay in acetonitrile via first-order kinetics, with the rate constants in the range (1.2-1.5) × 10⁶ s^-1. In 2-propanol solutions, they decay predominantly through protonation by the solvent, forming neutral hydrogenated radicals (4R-SQH^•), which are characterized by weak absorption bands with λ_max = 480-490 nm. Being oxygen-insensitive, the radical cations (4R-SQ^•+) are characterized by a strong absorption with λ_max = 450-630 nm, depending on the substituent (R). They are formed in a charge-transfer reaction between a radical cation derived from acetonitrile (ACN^•+) and substituted 3-styryl-quinoxalin-2-one derivatives (4R-SQ) with a pseudo-first-order rate constant k = (2.7-4.7) × 10⁵ s^-1 measured in solutions containing 0.1 mM 4R-3-SQ. The Hammett equation plot gave a very small negative slope (ρ = -0.08), indicating a very weak influence of the substituents in the benzene ring on the rate of charge-transfer reaction. The decay of 4R-SQ^•+ in Ar-saturated acetonitrile solutions occurs with a pseudo-first-order rate constant k = (1.6-6.2) × 10⁴ s^-1 and, in principle, is not affected by the presence of O₂, suggesting charge-spin delocalization over the whole 3-SQ molecule. Most of the radiolytically generated transient spectra are reasonably well-reproduced by semiempirical PM3-ZINDO/S (for 4R-SQ^•-) and density functional theory quantum mechanics calculations employing M06-2x hybrid functional together with the def2-TZVP basis set (for 4R-SQ^•+).

Photoionization and trans-to-cis isomerization of β-cyclodextrin-encapsulated azobenzene induced by two-color two-laser-pulse excitation

Azobenzene (1) and the complex resulting from the incorporation of 1 with cyclodextrin (1/CD) are attractive for light-driven applications such as micromachining and chemical biology tools. The highly sensitive photoresponse of 1 is crucial for light-driven applications containing both 1 and 1/CD to reach their full potential. In this study, we investigated the photoionization and trans-to-cis isomerization of 1/CD induced by one- and two-color two-laser pulse excitation. Photoionization of 1/CD, which was induced by stepwise two-photon absorption, was observed using laser pulse excitation at 266nm. Additionally, simultaneous irradiation with 266 and 532nm laser pulses increased the trans-to-cis isomerization yield (Υ_t→c) by 27%. It was concluded that the increase in Υ_t→c was caused by the occurrence of trans-to-cis isomerization in the higher-energy singlet state (S_n), which was reached by S₁→S_n transition induced by laser pulse excitation at 532nm. The results of this study are potentially applicable in light-driven applications such as micromachining and chemical biology tools.

Theoretical examination of competitive β-radical-induced cleavages of N–Cα and Cα–C bonds of peptides

Selective cleavages of N–Cα and Cα–C bonds of β-radical tautomers of amino acid residues in radical peptides have been examined theoretically by means of the density functional theory at the M06-2X/6-311++G(d,p) level. The majority of the bond cleavages are homolytic via β-scission. Their energy barriers depend largely on the ability of the radical being stabilized in the transition structures and the availability of a mobile proton in the vicinity of the β-radical center. The N–Cα bond is less favorably cleaved than the Cα–C bond (except Ser and Thr) for systems without a mobile proton. It is because, firstly, the homolytic cleavage is less favorable for the more polar N–Cα bond than for the less polar Cα–C bond. Secondly, a less stable σ-radical localized on the amide nitrogen atom of the incipient N-terminal fragment is formed for the former, while a more stable radical delocalized in a π*(CO)-like orbital of the incipient C-terminal fragment is formed for the latter. In the presence of a mobile proton N-terminal to the β-radical center, some degrees of heterolytic cleavage character, as preferred by the polar N–Cα bond, are observed. Consequently, its barrier is reduced. If the mobile proton is located at the C-terminal amide oxygen of the β-radical center, the Cα–C bond cleavage will be significantly suppressed. It is because the radical in the incipient C-terminal fragment becomes more localized as a σ-radical on the carbon atom of its protonated amide group. With basic amino acid residues, the Cα–C bond cleavage can be reactivated. Heterolytic cleavage of the polar N–Cα bond can be largely facilitated if a mobile proton N-terminal to the β-radical center is available and the radical in the incipient C-terminal fragment is sufficiently stabilized, for instance, by the aromatic side chain of Trp and Tyr. Therefore, cleavages of the N–Cα bond induced by the β-radical tautomer of Trp and Tyr are often preferred as compared with cleavages of the Cα–C bond in peptide radical cations containing mobile protons.

Crucial role of solvent-impacted molecular anionic resonances in controlling protonation modes in the acetonitrile-water anionic cluster revealed by ab initio molecular dynamics simulations

We present an ab initio molecular dynamics simulation study of a CH3CN-(H2O)40 cluster with an excess electron (EE) injected vertically in this work. Instead of surface bound or internally solvated electron, a hydrated CH3CN(-) is first formed as the CN transient after geometrical relaxation. The driving forces for the formation of CH3CN(-) are bending vibration of ∠CCN angle, which initiates transfer of an extra charge to the CH3CN LUMO, and hydration effect of the immediate water molecules, which plays a stabilizing role. Solvent thermal fluctuation can lead to different resonances (the quasi-C2-resonance versus quasi-N-resonance) from the CN transient and further cause the hydrated CH3CN(-) system to evolve via two distinctly different pathways featuring spontaneous proton transfer to the central C and N sites, producing two different protonation products, respectively. The solvent thermal fluctuation induced formation of hydrogen bonding with the corresponding sites (C2 versus N) is responsible for the quasi-resonances and interconversion between three resonant structures and further proton transfers featuring spontaneous transfer of a proton to C2 or to N from its interacting water molecule. The duration of CH3CN(-) for either of the two proton transfer processes is less than 200 fs. On the basis of experimental ESR results in which only the CH3CHN radical was found and present theoretical calculations, it is suggested that the trans-CH3CNH radical can be further converted to the CH3CHN radical via a water-mediated hydrogen atom transfer path.

Reduction of Acetonitrile by Hydrated Magnesium Cations Mg+ (H2 O)n (n≈20-60) in the Gas Phase

Ion-molecule reactions of Mg⁺ (H₂ O)_n (n≈20-60) with CH₃ CN are studied by Fourier-transform ion-cyclotron resonance mass spectrometry. Collision with CH₃ CN initiates the formation of MgOH⁺ (H₂ O)_n-1 together with CH₃ CHN^. or CH₃ CNH^. , which is similar to the reaction of hydrated electrons (H₂ O)_n ^- with CH₃ CN. In subsequent reaction steps, three more CH₃ CN molecules are taken up by the clusters, to form MgOH⁺ (CH₃ CN)₃ after a reaction delay of 60 seconds. Density functional theory (DFT) calculations at the M06/6-31++G(d,p) level of theory suggest that the bending motion of CH₃ CN allows the unpaired electron that is solvated out from the Mg center to localize in a π*(CN)-like orbital of the bent CH₃ CN^.- , which undergoes spontaneous proton transfer to form CH₃ CNH^. or CH₃ CHN^. , with the former being kinetically more favorable. The reaction energy for a cluster with the hexacoordinated Mg center is more exothermic than that with the pentacoordinated Mg. The CH₃ CNH^. or CH₃ CHN^. is preferentially solvated on the cluster surface rather than at the first solvation shell of the Mg center. By contrast, the three additional CH₃ CN molecules taken up by the resulting MgOH⁺ (H₂ O)_n clusters coordinate directly to the first solvation shell of the MgOH⁺ core, as revealed by DFT calculations.