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Bin Mohd Yusof MS, Siow JX, Yang N, Chan WX, Loh ZH. Spectroscopic observation and ultrafast coherent vibrational dynamics of the aqueous phenylalanine radical. Phys Chem Chem Phys 2022; 24:2800-2812. [PMID: 35048090 DOI: 10.1039/d1cp04326a] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The phenylalanine radical (Phe˙) has been proposed to mediate biological electron transport (ET) and exhibit long-lived electronic coherences following attosecond photoionization. However, the coupling of ultrafast structural reorganization to the oxidation/ionization of biomolecules such as phenylalanine remains unexplored. Moreover, studies of ET involving Phe˙ are hindered by its hitherto unobserved electronic spectrum. Here, we report the spectroscopic observation and coherent vibrational dynamics of aqueous Phe˙, prepared by sub-6 fs photodetachment of phenylalaninate anions. Sub-picosecond transient absorption spectroscopy reveals the ultraviolet absorption signature of Phe˙. Ultrafast structural reorganization drives coherent vibrational motion involving nine fundamental frequencies and one overtone. DFT calculations rationalize the absence of the decarboxylation reaction, a photodegradation pathway previously identified for Phe˙. Our findings guide the interpretation of future attosecond experiments aimed at elucidating coherent electron motion in photoionized aqueous biomolecules and pave way for the spectroscopic identification of Phe˙ in studies of biological ET.
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Affiliation(s)
- Muhammad Shafiq Bin Mohd Yusof
- Division of Chemistry and Biological Chemistry, School of Physical and Mathematical Sciences, Nanyang Technological University, 21 Nanyang Link, Singapore 637371, Singapore.
| | - Jing Xuan Siow
- Division of Chemistry and Biological Chemistry, School of Physical and Mathematical Sciences, Nanyang Technological University, 21 Nanyang Link, Singapore 637371, Singapore.
| | - Ningchen Yang
- Division of Chemistry and Biological Chemistry, School of Physical and Mathematical Sciences, Nanyang Technological University, 21 Nanyang Link, Singapore 637371, Singapore.
| | - Wei Xin Chan
- Division of Chemistry and Biological Chemistry, School of Physical and Mathematical Sciences, Nanyang Technological University, 21 Nanyang Link, Singapore 637371, Singapore.
| | - Zhi-Heng Loh
- Division of Chemistry and Biological Chemistry, School of Physical and Mathematical Sciences, Nanyang Technological University, 21 Nanyang Link, Singapore 637371, Singapore.
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2
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Gibbard JA, Clarke CJ, Verlet JRR. Photoelectron spectroscopy of the protoporphyrin IX dianion. Phys Chem Chem Phys 2021; 23:18425-18431. [PMID: 34612383 DOI: 10.1039/d1cp03075b] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Two-dimensional photoelectron spectroscopy using nanosecond and femtosecond lasers has been used to study the protopophyrin IX dianion at photon energies between 1.8-4.1 eV. The photoelectron spectra indicated the presence of two direct detachment channels, tunnelling through the repulsive Coulomb barrier (RCB) and thermionic emission from monoanions. A direct detachment feature suggested a near 0 eV electron affinity, which may be attributable to the repulsive through space interaction of the unshielded carboxylate groups. The minimum height of the repulsive Coulomb barrier (RCB) was found to be between 1.4-1.9 eV. Adiabatic tunnelling through the RCB was seen to occur on a timescale faster than rotational dephasing of the molecule. The observation of thermionic emission below the RCB in the nanosecond spectra originated from monoanions, which were produced via photon-cycling of the dianion.
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Affiliation(s)
- Jemma A Gibbard
- Department of Chemistry, Durham University, Durham, DH1 3LE, UK.
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3
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Abbott HE, Hey JC, Britton MM, Johnston RL. Effects of Hydration on the Conformational Behavior of Flexible Molecules with Two Charge Centers. J Phys Chem A 2020; 124:5323-5330. [PMID: 32501011 DOI: 10.1021/acs.jpca.0c02004] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The hydration behavior of alkyl-diammonium di-cations and alkyl-dicarboxylate di-anions, of varying alkyl chain length, was examined using basin-hopping (BH) global optimization techniques. For every di-ion investigated, a conformational transition from linear to folded is observed at a critical hydration number, n*, specific to each di-ion. A stepwise hydration study has been undertaken for alkyl-dicarboxylate di-anions in finite water clusters containing 1-12 water molecules, and low-energy structures have been examined for larger water clusters. An even number of carbons in the alkyl chain gives rise to more stable conformations in unhydrated, implicitly solvated, and explicitly solvated conditions. This work provides valuable information on how the hydration of ammonium and carboxylate ions influence larger biomolecules' conformations.
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Affiliation(s)
- Helen E Abbott
- School of Chemistry, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom
| | - John C Hey
- School of Chemistry, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom
| | - Melanie M Britton
- School of Chemistry, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom
| | - Roy L Johnston
- School of Chemistry, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom
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4
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Gibbard JA, Shin AJ, Castracane E, Continetti RE. A high beam energy photoelectron-photofragment coincidence spectrometer for complex anions. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2018; 89:123304. [PMID: 30599593 DOI: 10.1063/1.5074112] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/22/2018] [Accepted: 11/20/2018] [Indexed: 06/09/2023]
Abstract
A new high beam energy photoelectron-photofragment coincidence (PPC) spectrometer is described that allows acceleration of heavy anions (>100 amu) to energies in the tens of keV using a linear accelerator (LINAC). High beam energies result in more efficient detection of the neutral photofragments produced via dissociative photodetachment (DPD) of the parent anion and increase the mass range that can be studied with PPC spectroscopy. The novel experimental setup couples an electrospray ionization (ESI) source and a hexapole accumulation trap with a 10-stage LINAC to give a kinematically complete measurement of the dissociation dynamics for heavier anions. ESI dramatically increases the range of anions that can be studied by PPC spectroscopy to include multiply charged anions and larger, more complex molecular ions important in biological, atmospheric, and combustion processes. A radiofrequency buffer-gas-cooled hexapole trap is used to accumulate sufficient ion density for single-shot coincidence measurements and thermalize the anions to room temperature. The photoelectron and up to three neutral fragments resulting from DPD are recorded in coincidence using time and position sensitive detectors. This novel experimental setup is characterized by studying the photodetachment of I-, and the DPD of I 2 - and the oxalate anion C2O4H- at beam energies of 11 keV, 16 keV, and 21 keV.
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Affiliation(s)
- J A Gibbard
- Department of Chemistry and Biochemistry, University of California, 9500 Gilman Dr, La Jolla, San Diego, California 92093-0340, USA
| | - A J Shin
- Department of Chemistry and Biochemistry, University of California, 9500 Gilman Dr, La Jolla, San Diego, California 92093-0340, USA
| | - E Castracane
- Department of Chemistry and Biochemistry, University of California, 9500 Gilman Dr, La Jolla, San Diego, California 92093-0340, USA
| | - R E Continetti
- Department of Chemistry and Biochemistry, University of California, 9500 Gilman Dr, La Jolla, San Diego, California 92093-0340, USA
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5
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Hou GL, Kong XT, Valiev M, Jiang L, Wang XB. Probing the early stages of solvation of cis-pinate dianions by water, acetonitrile, and methanol: a photoelectron spectroscopy and theoretical study. Phys Chem Chem Phys 2016; 18:3628-37. [DOI: 10.1039/c5cp05974g] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Photoelectron spectroscopy and theoretical studies indicate the coexistence of symmetric and asymmetric solvated clusters for cis-pinate dianions.
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Affiliation(s)
- Gao-Lei Hou
- Pacific Northwest National Laboratory
- Richland
- USA
| | - Xiang-Tao Kong
- State Key Laboratory of Molecular Reaction Dynamics
- Collaborative Innovation Center of Chemistry for Energy and Materials
- Dalian Institute of Chemical Physics
- Chinese Academy of Sciences
- Dalian 116023
| | - Marat Valiev
- Pacific Northwest National Laboratory
- Richland
- USA
| | - Ling Jiang
- State Key Laboratory of Molecular Reaction Dynamics
- Collaborative Innovation Center of Chemistry for Energy and Materials
- Dalian Institute of Chemical Physics
- Chinese Academy of Sciences
- Dalian 116023
| | - Xue-Bin Wang
- Pacific Northwest National Laboratory
- Richland
- USA
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6
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Wang LS. Perspective: Electrospray photoelectron spectroscopy: From multiply-charged anions to ultracold anions. J Chem Phys 2015; 143:040901. [DOI: 10.1063/1.4927086] [Citation(s) in RCA: 54] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023] Open
Affiliation(s)
- Lai-Sheng Wang
- Department of Chemistry, Brown University, Providence, Rhode Island 02912, USA
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7
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Huang DL, Dau PD, Liu HT, Wang LS. High-resolution photoelectron imaging of cold C₆₀⁻ anions and accurate determination of the electron affinity of C₆₀. J Chem Phys 2015; 140:224315. [PMID: 24929396 DOI: 10.1063/1.4881421] [Citation(s) in RCA: 80] [Impact Index Per Article: 8.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
High-resolution photoelectron imaging and spectroscopy of cold C₆₀⁻ anions are reported using a newly built photoelectron imaging apparatus coupled with an electrospray ionization source and a temperature-controlled cryogenic ion trap. Vibrationally resolved photoelectron spectra are obtained for the detachment transition from the ground state of C₆₀⁻ to that of C60 at various detachment wavelengths from 354.84 nm to 461.35 nm. The electron affinity of C60 is accurately measured to be 2.6835 ± 0.0006 eV. Numerous unexpected vibrational excitations are observed in the photoelectron spectra due to the Jahn-Teller effect in C₆₀⁻ and Hertzberg-Teller vibronic coupling in both C₆₀⁻ and C60. Both the relative intensities of vibrational peaks and their photoelectron angular distributions provide evidence for the vibronic couplings. The observed p-wave-like behavior in the angular distribution of the 0₀⁰ transition suggests that the electron is detached from an s-type orbital.
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Affiliation(s)
- Dao-Ling Huang
- Department of Chemistry, Brown University, Providence, Rhode Island 02912, USA
| | - Phuong Diem Dau
- Department of Chemistry, Brown University, Providence, Rhode Island 02912, USA
| | - Hong-Tao Liu
- Department of Chemistry, Brown University, Providence, Rhode Island 02912, USA
| | - Lai-Sheng Wang
- Department of Chemistry, Brown University, Providence, Rhode Island 02912, USA
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West CW, Bull JN, Antonkov E, Verlet JRR. Anion resonances of para-benzoquinone probed by frequency-resolved photoelectron imaging. J Phys Chem A 2014; 118:11346-54. [PMID: 25301059 DOI: 10.1021/jp509102p] [Citation(s) in RCA: 51] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
The resonant attachment of a free electron to a closed shell neutral molecule and the interplay between the following electron detachment and electronic relaxation channels represents a fundamental but common process throughout chemical and biochemical systems. The new methodology of anion frequency-resolved photoelectron imaging is detailed and used to map out molecular excited state dynamics of gas-phase para-benzoquinone, which is the electron accepting moiety in many biological electron-transfer chains. Three-dimensional spectra of excitation energy, electron kinetic energy, and electron ejection anisotropy reveal clear fingerprints of excited and intermediate state dynamics. The results show that many of the excited states are strongly coupled, providing a route to forming the ground state radical anion, despite the fact that the electron is formally unbound in the excited states. The relation of our method to electron impact attachment studies and the key advantages, including the extension to time-resolved dynamics and to larger molecular systems, are discussed.
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Affiliation(s)
- Christopher W West
- Department of Chemistry, Durham University , Durham, DH1 3LE, United Kingdom
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9
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Deng SHM, Hou GL, Kong XY, Valiev M, Wang XB. Examining the Amine Functionalization in Dicarboxylates: Photoelectron Spectroscopy and Theoretical Studies of Aspartate and Glutamate. J Phys Chem A 2014; 118:5256-62. [PMID: 24979328 DOI: 10.1021/jp505439b] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Shihu H. M. Deng
- Physical Sciences
Division, Pacific Northwest National Laboratory, 902 Battelle Boulevard, P.O. Box 999, MS K8-88, Richland, Washington 99352, United States
| | - Gao-Lei Hou
- Physical Sciences
Division, Pacific Northwest National Laboratory, 902 Battelle Boulevard, P.O. Box 999, MS K8-88, Richland, Washington 99352, United States
| | - Xiang-Yu Kong
- Physical Sciences
Division, Pacific Northwest National Laboratory, 902 Battelle Boulevard, P.O. Box 999, MS K8-88, Richland, Washington 99352, United States
| | - Marat Valiev
- Environmental
Molecular Sciences Laboratory, Pacific Northwest National Laboratory, P.O. Box 999, Richland, Washington 99352, United States
| | - Xue-Bin Wang
- Physical Sciences
Division, Pacific Northwest National Laboratory, 902 Battelle Boulevard, P.O. Box 999, MS K8-88, Richland, Washington 99352, United States
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10
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Verlet JRR, Horke DA, Chatterley AS. Excited states of multiply-charged anions probed by photoelectron imaging: riding the repulsive Coulomb barrier. Phys Chem Chem Phys 2014; 16:15043-52. [DOI: 10.1039/c4cp01667j] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Recent progress towards understanding the repulsive Coulomb barrier in multiply-charged anion using photoelectron spectroscopy is discussed.
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Affiliation(s)
| | - Daniel A. Horke
- Center for Free-Electron Laser Science
- DESY
- 22607 Hamburg, Germany
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11
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Chatterley AS, Horke DA, Verlet JRR. Effects of resonant excitation, pulse duration and intensity on photoelectron imaging of a dianion. Phys Chem Chem Phys 2014; 16:489-96. [DOI: 10.1039/c3cp53235f] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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12
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Horke DA, Chatterley AS, Verlet JRR. Influence of the repulsive Coulomb barrier on photoelectron spectra and angular distributions in a resonantly excited dianion. J Chem Phys 2013; 139:084302. [DOI: 10.1063/1.4818597] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023] Open
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13
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Poad BLJ, Kirk BB, Hettiarachchi PI, Trevitt AJ, Blanksby SJ, Clark T. Direct Detection of a Persistent Carbonyloxyl Radical in the Gas Phase. Angew Chem Int Ed Engl 2013. [DOI: 10.1002/ange.201304316] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
| | - Benjamin B. Kirk
- School of Chemistry, University of Wollongong, NSW 2522 (Australia)
- ARC Centre of Excellence for Free Radical Chemistry and Biotechnology, School of Chemistry, University of Wollongong, NSW 2522 (Australia)
| | | | - Adam J. Trevitt
- School of Chemistry, University of Wollongong, NSW 2522 (Australia)
- ARC Centre of Excellence for Free Radical Chemistry and Biotechnology, School of Chemistry, University of Wollongong, NSW 2522 (Australia)
| | - Stephen J. Blanksby
- School of Chemistry, University of Wollongong, NSW 2522 (Australia)
- ARC Centre of Excellence for Free Radical Chemistry and Biotechnology, School of Chemistry, University of Wollongong, NSW 2522 (Australia)
| | - Timothy Clark
- Computer‐Chemie‐Centrum, Department Chemie und Parmazie, Friedrich‐Alexander‐University at Erlangen‐Nürnberg, 91052 Erlangen (Germany)
- Centre for Molecular Design, University of Portsmouth, King Henry Building, Portsmouth PO1 2DY (United Kingdom)
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14
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Poad BLJ, Kirk BB, Hettiarachchi PI, Trevitt AJ, Blanksby SJ, Clark T. Direct Detection of a Persistent Carbonyloxyl Radical in the Gas Phase. Angew Chem Int Ed Engl 2013; 52:9301-4. [DOI: 10.1002/anie.201304316] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2013] [Indexed: 11/07/2022]
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15
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Murdachaew G, Valiev M, Kathmann SM, Wang XB. Study of Ion Specific Interactions of Alkali Cations with Dicarboxylate Dianions. J Phys Chem A 2012; 116:2055-61. [DOI: 10.1021/jp3012848] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Affiliation(s)
- Garold Murdachaew
- Chemical & Materials Sciences Division, Pacific Northwest National Laboratory, 902 Battelle Boulevard, P.O. Box 999, Richland, Washington 99352, United States
| | - Marat Valiev
- Environmental
Molecular Sciences
Laboratory, Pacific Northwest National Laboratory, P.O. Box 999, Richland, Washington 99352, United States
| | - Shawn M. Kathmann
- Chemical & Materials Sciences Division, Pacific Northwest National Laboratory, 902 Battelle Boulevard, P.O. Box 999, Richland, Washington 99352, United States
| | - Xue-Bin Wang
- Chemical & Materials Sciences Division, Pacific Northwest National Laboratory, 902 Battelle Boulevard, P.O. Box 999, Richland, Washington 99352, United States
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16
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Adams CL, Knurr BJ, Weber JM. Photoelectron spectroscopy of 1-nitropropane and 1-nitrobutane anions. J Chem Phys 2012; 136:064307. [PMID: 22360187 DOI: 10.1063/1.3683250] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We present low-energy velocity map photoelectron imaging results for bare and Ar-solvated 1-nitropropane and 1-nitrobutane anions. We report the adiabatic electron affinity of 1-nitropropane as (223 ± 6) meV and that of 1-nitrobutane as (240 ± 6 meV). The vertical detachment energies of these two species are found to be (0.92 ± 0.05) and (0.88 ± 0.05) eV, respectively. The photoelectron spectra are discussed in the framework of Franck-Condon simulations based on density functional theory. We observe unusual resonances in the photoelectron spectra of both ions under study, whose kinetic energy is independent of the photon energy of the detaching radiation. We discuss possible origins of these resonances as rescattering phenomena, consistent with the experimental photoelectron angular distributions.
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Affiliation(s)
- Christopher L Adams
- JILA, NIST and Department of Chemistry and Biochemistry, University of Colorado, Boulder, Colorado 80309-0440, USA
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