1
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Tang P, Zhang J, Li X, Yang F, Zhao Q, Ma J, Hu Z, Sun H, Wang XB, Sun Z, Yang Y. Cryogenic Photoelectron Spectroscopic and Theoretical Study of the Electronic and Geometric Structures of Undercoordinated Osmium Chloride Anions OsCl n- ( n = 3-5). J Phys Chem A 2024. [PMID: 38968614 DOI: 10.1021/acs.jpca.4c01713] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/07/2024]
Abstract
A series of anionic transition metal halides, OsCln- (n = 3-5), have been investigated using a newly developed, home-constructed, cryogenic anion cluster photoelectron spectroscopy. The target anionic species are generated through collision-induced dissociation in a two-stage ion funnel. The measured vertical detachment energies (VDEs) are 3.48, 4.54, and 4.81 eV for n = 3, 4, and 5, respectively. Density functional theory calculations at the B3LYP-D3(BJ)//aug-cc-pVTZ(-pp) level predict the lowest energy structures of the atomic form of OsCln- (n = 3-5) to be a quintet triangle, quartet square, and quintet square-based pyramid, respectively. The CCSD(T)-calculated VDEs and corresponding adiabatic detachment energies agree well with our experimental measurements. Analysis of the corresponding frontier molecular orbitals and charge density differences suggests that the d-orbitals of the transition metal Os play a primary role in the single-photon detachment processes, and the detached electrons originating from different molecular orbitals are distinguishable.
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Affiliation(s)
- Peng Tang
- State Key Laboratory of Precision Spectroscopy, and School of Physics and Electron Science, East China Normal University, Shanghai 200241, China
| | - Jian Zhang
- College of Chemistry and Chemical Engineering, Donghua University, Shanghai 201620, China
| | - Xueying Li
- State Key Laboratory of Precision Spectroscopy, and School of Physics and Electron Science, East China Normal University, Shanghai 200241, China
| | - Fan Yang
- State Key Laboratory of Precision Spectroscopy, and School of Physics and Electron Science, East China Normal University, Shanghai 200241, China
| | - Qixu Zhao
- State Key Laboratory of Precision Spectroscopy, and School of Physics and Electron Science, East China Normal University, Shanghai 200241, China
| | - Junyang Ma
- State Key Laboratory of Precision Spectroscopy, and School of Physics and Electron Science, East China Normal University, Shanghai 200241, China
| | - Zhubin Hu
- State Key Laboratory of Precision Spectroscopy, and School of Physics and Electron Science, East China Normal University, Shanghai 200241, China
| | - Haitao Sun
- State Key Laboratory of Precision Spectroscopy, and School of Physics and Electron Science, East China Normal University, Shanghai 200241, China
| | - Xue-Bin Wang
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Zhenrong Sun
- State Key Laboratory of Precision Spectroscopy, and School of Physics and Electron Science, East China Normal University, Shanghai 200241, China
- Collaborative Innovation Center of Extreme Optics, Shanxi University, Taiyuan, Shanxi 030006, China
| | - Yan Yang
- State Key Laboratory of Precision Spectroscopy, and School of Physics and Electron Science, East China Normal University, Shanghai 200241, China
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2
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Gibbard JA, Kellow CS, Verlet JRR. Photoelectron spectroscopy of the deprotonated tryptophan anion: the contribution of deprotomers to its photodetachment channels. Phys Chem Chem Phys 2024; 26:12053-12059. [PMID: 38578256 DOI: 10.1039/d4cp00309h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/06/2024]
Abstract
Photoelectron spectroscopy and electronic structure calculations are used to investigate the electronic structure of the deprotonated anionic form of the aromatic amino acid tryptophan, and its chromophore, indole. The photoelectron spectra of tryptophan, recorded at different wavelengths across the UV, consist of two direct detachment channels and thermionic emission, whereas the hν = 4.66 eV spectrum of indole consists of two direct detachment features. Electronic structure calculations indicate that two deprotomers of tryptophan are present in the ion beam; deprotonation of the carboxylic acid group (Trp(I)-) or the N atom on the indole ring (Trp(II)-). Strong similarities are observed between the direct detachment channels in the photoelectron spectra of tryptophan and indole, which in conjunction with electronic structure calculations, indicate that electron loss from Trp(II)- dominates this portion of the spectra. However, there is some evidence that direct detachment of Trp(I)- is also observed. Thermionic emission is determined to predominantly arise from the decarboxylation of Trp(I)-, mediated by the ππ* excited state near λ = 300 nm, which results in an anionic fragment with a negative electron affinity that readily autodetaches.
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Affiliation(s)
- Jemma A Gibbard
- Department of Chemistry, Durham University, Durham, DH1 3LE, UK.
| | | | - Jan R R Verlet
- Department of Chemistry, Durham University, Durham, DH1 3LE, UK.
- J. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences, Dolejškova 3, 18223 Prague 8, Czech Republic
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3
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Gibbard JA, Reppel J, Verlet JRR. Photodissociation of permanganate (MnO 4-) produces the manganese dioxide anion (MnO 2-) in an excited triplet state. Phys Chem Chem Phys 2023. [PMID: 38018508 DOI: 10.1039/d3cp04576e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2023]
Abstract
Photoelectron imaging, electron action spectroscopy and electronic structure calculations are used to probe the structure and dynamics of MnO4-. Following excitation to the first bright absorption band of MnO4- (11T2), photodetachment, via ground state electron loss, and photodissociation, to produce MnO2-, are both observed to occur simultaneously. MnO2- is produced in an excited electronic state, identified as a triplet state, which indicates that the dissociation proceeds on singlet potential energy surfaces via spin conservation. Furthermore, electronic structure calculations indicate that both photodetachment and photodissociation are multiple photon processes that are mediated by the same 11T2 excited state. Taken together this data indicates that photodissociation of MnO4- occurs via a statistical dissociation on the MnO4- ground state at visible wavelengths.
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Affiliation(s)
- Jemma A Gibbard
- Department of Chemistry, Durham University, Durham DH1 3LE, UK.
| | - Jonathan Reppel
- Department of Chemistry, Durham University, Durham DH1 3LE, UK.
| | - Jan R R Verlet
- Department of Chemistry, Durham University, Durham DH1 3LE, UK.
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4
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Gibbard JA, Verlet JRR. Kasha's Rule and Koopmans' Correlations for Electron Tunnelling through Repulsive Coulomb Barriers in a Polyanion. J Phys Chem Lett 2022; 13:7797-7801. [PMID: 35973214 PMCID: PMC9421885 DOI: 10.1021/acs.jpclett.2c02145] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/17/2023]
Abstract
The long-range electronic structure of polyanions is defined by the repulsive Coulomb barrier (RCB). Excited states can decay by resonant electron tunnelling through RCBs, but such decay has not been observed for electronically excited states other than the first excited state, suggesting a Kasha-type rule for resonant electron tunnelling. Using action spectroscopy, photoelectron imaging, and computational chemistry, we show that the fluorescein dianion, Fl2-, partially decays through electron tunnelling from the S2 excited state, thus demonstrating anti-Kasha behavior, and that resonant electron tunnelling adheres to Koopmans' correlations, thus disentangling different channels.
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5
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Ranković M, Nag P, Anstöter CS, Mensa-Bonsu G, Kumar T P R, Verlet JRR, Fedor J. Resonances in nitrobenzene probed by the electron attachment to neutral and by the photodetachment from anion. J Chem Phys 2022; 157:064302. [PMID: 35963718 DOI: 10.1063/5.0101358] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We probe resonances (transient anions) in nitrobenzene with the focus on the electron emission from these. Experimentally, we populate resonances in two ways: either by the impact of free electrons on the neutral molecule or by the photoexcitation of the bound molecular anion. These two excitation means lead to transient anions in different initial geometries. In both cases, the anions decay by electron emission and we record the electron spectra. Several types of emission are recognized, differing by the way in which the resulting molecule is vibrationally excited. In the excitation of specific vibrational modes, distinctly different modes are visible in electron collision and photodetachment experiments. The unspecific vibrational excitation, which leads to the emission of thermal electrons following the internal vibrational redistribution, shows similar features in both experiments. A model for the thermal emission based on a detailed balance principle agrees with the experimental findings very well. Finally, a similar behavior in the two experiments is also observed for a third type of electron emission, the vibrational autodetachment, which yields electrons with constant final energies over a broad range of excitation energies. The entrance channels for the vibrational autodetachment are examined in detail, and they point to a new mechanism involving a reverse valence to non-valence internal conversion.
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Affiliation(s)
- Miloš Ranković
- J. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences, Dolejškova 3, 18223 Prague, Czech Republic
| | - Pamir Nag
- J. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences, Dolejškova 3, 18223 Prague, Czech Republic
| | - Cate S Anstöter
- Department of Chemistry, Durham University, Durham DH1 3LE, United Kingdom
| | - Golda Mensa-Bonsu
- Department of Chemistry, Durham University, Durham DH1 3LE, United Kingdom
| | - Ragesh Kumar T P
- J. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences, Dolejškova 3, 18223 Prague, Czech Republic
| | - Jan R R Verlet
- Department of Chemistry, Durham University, Durham DH1 3LE, United Kingdom
| | - Juraj Fedor
- J. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences, Dolejškova 3, 18223 Prague, Czech Republic
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6
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Gibbard JA, Verlet JRR. Photoelectron Imaging Study of the Diplatinum Iodide Dianions [Pt 2I 6] 2- and [Pt 2I 8] 2. J Phys Chem A 2022; 126:3495-3501. [PMID: 35621996 PMCID: PMC9189829 DOI: 10.1021/acs.jpca.2c02008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
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Photoelectron spectroscopy
has been used to study the electronic
structure, photodetachment, and photodissociation of the stable diplatinum
iodide dianions [Pt2I6]2– and
[Pt2I8]2–. Photoelectron spectra
over a range of photon energies show the characteristic absence of
low kinetic energy photoelectrons expected for dianions as a result
of the repulsive Coulomb barrier (RCB). Vertical detachment energies
of ∼1.6 and ∼1.9 eV and minimum RCBs of ∼1.2
and ∼1.3 eV are reported for [Pt2I6]2– and [Pt2I8]2–, respectively. Both of the diplatinum halides exhibit three direct
detachment channels with distinct anisotropies, analogous to the previously
reported spectra for PtI2– and PtI–, suggesting a platinum-centered molecular core that
dominates the photodetachment. Additionally, evidence for two-photon
photodissociation and subsequent photodetachment channels producing
I– are observed for both dianions. Finally, an unexplained
feature is observed at photon energies around 3 eV, whose origin is
considered. Our work highlights the complex electronic structure of
the heavy platinum-halide dianions that are characterized by a dense
manifold of electronic states.
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Affiliation(s)
- Jemma A Gibbard
- Department of Chemistry, Durham University, Durham DH1 3LE, United Kingdom
| | - Jan R R Verlet
- Department of Chemistry, Durham University, Durham DH1 3LE, United Kingdom
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7
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Anstöter CS, Verlet JRR. A Hückel Model for the Excited-State Dynamics of a Protein Chromophore Developed Using Photoelectron Imaging. Acc Chem Res 2022; 55:1205-1213. [PMID: 35172580 PMCID: PMC9084545 DOI: 10.1021/acs.accounts.1c00780] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
Chemistry can be described as the movement of nuclei within molecules and the concomitant instantaneous change in electronic structure. This idea underpins the central chemical concepts of potential energy surfaces and reaction coordinates. To experimentally capture such chemical change therefore requires methods that can probe both the nuclear and electronic structure simultaneously and on the time scale of atomic motion. In this Account, we show how time-resolved photoelectron imaging can do exactly this and how it can be used to build a detailed and intuitive understanding of the electronic structure and excited-state dynamics of chromophores. The chromophore of the photoactive yellow protein (PYP) is used as a case study. This chromophore contains a para-substituted phenolate anion, where the substituent, R, can be viewed as an acrolein derivative. It is shown that the measured photoelectron angular distribution can be directly related to the electronic structure of the para-substituted phenolate anion. By incrementally considering differing R groups, it is also shown that these photoelectron angular distributions are exquisitely sensitive to the conformational flexibility of R and that when R contains a π-system the excited states of the chromophore can be viewed as a linear combination of the π* molecular orbitals on the phenolate (πPh*) and the R substituent (πR*). Such Hückel treatment shows that the S1 state of the PYP chromophore has predominantly πR* character and that it is essentially the same as the chromophore of the green fluorescent protein (GFP). The S1 excited-state dynamics of the PYP chromophore probed by time-resolved photoelectron imaging clearly reveals both structural (nuclear) dynamics through the energy spectrum and electronic dynamics through the photoelectron angular distributions. Both motions can be accurately assigned using quantum chemical calculations, and these are consistent with the intuitive Hückel treatment presented. The photoactive protein chromophores considered here are examples of where a chemists' intuitive Hückel view for ground-state chemistry appears to be transferable to the prediction of photochemical excited-state reactivity. While elegant and insightful, such models have limitations, including nonadiabatic dynamics, which is present in a related PYP chromophore, where a fraction of the S1 state population forms a nonvalence (dipole-bound) state of the anion.
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Affiliation(s)
- Cate S. Anstöter
- Department of Chemistry, Durham University, Durham DH1 3LE, United Kingdom
| | - Jan R. R. Verlet
- Department of Chemistry, Durham University, Durham DH1 3LE, United Kingdom
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8
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Gibbard JA, Verlet JRR. Photoelectron imaging of PtI 2 - and its PtI - photodissociation product. J Chem Phys 2022; 156:134303. [PMID: 35395905 DOI: 10.1063/5.0085610] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
The photoelectron imaging of PtI2 - is presented over photon energies ranging from hν = 3.2 to 4.5 eV. The electron affinity of PtI2 is found to be 3.4 ± 0.1 eV, and the photoelectron spectrum contains three distinct peaks corresponding to three low-lying neutral states. Using a simple d-block model and the measured photoelectron angular distributions, the three states are tentatively assigned. Photodissociation of PtI2 - is also observed, leading to the formation of I- and of PtI-. The latter allows us to determine the electron affinity of PtI to be 2.35 ± 0.10 eV. The spectrum of PtI- is similarly structured with three peaks which, again, can be tentatively assigned using a similar model that agrees with the photoelectron angular distributions.
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Affiliation(s)
- Jemma A Gibbard
- Department of Chemistry, Durham University, Durham DH1 3LE, United Kingdom
| | - Jan R R Verlet
- Department of Chemistry, Durham University, Durham DH1 3LE, United Kingdom
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9
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Photochemistry of the pyruvate anion produces CO 2, CO, CH 3-, CH 3, and a low energy electron. Nat Commun 2022; 13:937. [PMID: 35177613 PMCID: PMC8854594 DOI: 10.1038/s41467-022-28582-4] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2021] [Accepted: 02/01/2022] [Indexed: 11/09/2022] Open
Abstract
The photochemistry of pyruvic acid has attracted much scientific interest because it is believed to play critical roles in atmospheric chemistry. However, under most atmospherically relevant conditions, pyruvic acid deprotonates to form its conjugate base, the photochemistry of which is essentially unknown. Here, we present a detailed study of the photochemistry of the isolated pyruvate anion and uncover that it is extremely rich. Using photoelectron imaging and computational chemistry, we show that photoexcitation by UVA light leads to the formation of CO2, CO, and CH3−. The observation of the unusual methide anion formation and its subsequent decomposition into methyl radical and a free electron may hold important consequences for atmospheric chemistry. From a mechanistic perspective, the initial decarboxylation of pyruvate necessarily differs from that in pyruvic acid, due to the missing proton in the anion. Pyruvic acid and its conjugate base, the pyruvate anion, are largely present in the atmosphere. Here the authors, using photoelectron imaging and quantum chemistry calculations, investigate the photochemistry of isolated pyruvate anions initiated by UVA radiation and report the formation of CO2, CO, and CH3− further decomposing into CH3 and a free electron.
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10
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Anstöter CS, Curchod BFE, Verlet JRR. Photo-isomerization of the isolated photoactive yellow protein chromophore: what comes before the primary step? Phys Chem Chem Phys 2022; 24:1305-1309. [PMID: 34984423 DOI: 10.1039/d1cp05259d] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
Photoactive proteins typically rely on structural changes in a small chromophore to initiate a biological response. While these changes often involve isomerization as the "primary step", preceding this is an ultrafast relaxation of the molecular framework caused by the sudden change in electronic structure upon photoexcitation. Here, we capture this motion for an isolated model chromophore of the photoactive yellow protein using time-resolved photoelectron imaging. It occurs in <150 fs and is apparent from a spectral shift of ∼70 meV and a change in photoelectron anisotropy. Electronic structure calculations enable the quantitative assignment of the geometric and electronic structure changes to a planar intermediate from which the primary step can then proceed.
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Affiliation(s)
- Cate S Anstöter
- Department of Chemistry, Durham University, Durham DH1 3LE, UK.
| | | | - Jan R R Verlet
- Department of Chemistry, Durham University, Durham DH1 3LE, UK.
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11
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Gibbard JA, Clarke CJ, Verlet JRR. Photoelectron spectroscopy of the protoporphyrin IX dianion. Phys Chem Chem Phys 2021; 23:18425-18431. [PMID: 34612383 DOI: 10.1039/d1cp03075b] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Two-dimensional photoelectron spectroscopy using nanosecond and femtosecond lasers has been used to study the protopophyrin IX dianion at photon energies between 1.8-4.1 eV. The photoelectron spectra indicated the presence of two direct detachment channels, tunnelling through the repulsive Coulomb barrier (RCB) and thermionic emission from monoanions. A direct detachment feature suggested a near 0 eV electron affinity, which may be attributable to the repulsive through space interaction of the unshielded carboxylate groups. The minimum height of the repulsive Coulomb barrier (RCB) was found to be between 1.4-1.9 eV. Adiabatic tunnelling through the RCB was seen to occur on a timescale faster than rotational dephasing of the molecule. The observation of thermionic emission below the RCB in the nanosecond spectra originated from monoanions, which were produced via photon-cycling of the dianion.
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Affiliation(s)
- Jemma A Gibbard
- Department of Chemistry, Durham University, Durham, DH1 3LE, UK.
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12
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Castellani ME, Verlet JRR. Intramolecular Photo-Oxidation as a Potential Source to Probe Biological Electron Damage: A Carboxylated Adenosine Analogue as Case Study. Molecules 2021; 26:2877. [PMID: 34067988 PMCID: PMC8152231 DOI: 10.3390/molecules26102877] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2021] [Revised: 05/05/2021] [Accepted: 05/10/2021] [Indexed: 11/16/2022] Open
Abstract
A carboxylated adenosine analog (C-Ado-) has been synthesized and probed via time-resolved photoelectron spectroscopy in order to induce intra-molecular charge transfer from the carboxylic acid moiety to the nucleobase. Intra-molecular charge transfer can be exploited as starting point to probe low-energy electron (LEE) damage in DNA and its derivatives. Time-dependent density functional theory (TD-DFT) calculations at the B3LYP-6311G level of theory have been performed to verify that the highest occupied molecular orbital (HOMO) was located on carboxylic acid and that the lowest occupied molecular orbital (LUMO) was on the nucleobase. Hence, the carboxylic acid could work as electron source, whilst the nucleobase could serve the purpose of electron acceptor. The dynamics following excitation at 4.66 eV (266 nm) were probed using time-resolved photoelectron spectroscopy using probes at 1.55 eV (800 nm) and 3.10 eV (400 nm). The data show rapid decay of the excited state population and, based on the similarity of the overall dynamics to deoxy-adenosine monophosphate (dAMP-), it appears that the dominant decay mechanism is internal conversion following 1ππ* excitation of the nucleobase, rather than charge-transfer from the carboxylic acid to the nucleobase.
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13
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Castellani ME, Avagliano D, Verlet JRR. Ultrafast Dynamics of the Isolated Adenosine-5'-triphosphate Dianion Probed by Time-Resolved Photoelectron Imaging. J Phys Chem A 2021; 125:3646-3652. [PMID: 33882670 DOI: 10.1021/acs.jpca.1c01646] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
The excited state dynamics of the doubly deprotonated dianion of adenosine-5'-triphosphate, [ATP-H2]2-, has been spectroscopically explored by time-resolved photoelectron spectroscopy following excitation at 4.66 eV. Time-resolved photoelectron spectra show that two competing processes occur for the initially populated 1ππ* state. The first is rapid electron emission by tunneling through a repulsive Coulomb barrier as the 1ππ* state is a resonance. The second is nuclear motion on the 1ππ* state surface leading to an intermediate that no longer tunnels and subsequently decays by internal conversion to the ground electronic state. The spectral signatures of the features are similar to those observed for other adenine-derivatives, suggesting that this nucleobase is quite insensitive to the nearby negative charges localized on the phosphates, except of course for the appearance of the additional electron tunneling channel, which is open in the dianion.
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Affiliation(s)
| | - Davide Avagliano
- Institute of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Strasse 17 1090 Vienna, Austria
| | - Jan R R Verlet
- Department of Chemistry, Durham University, DH1 3LE Durham, U.K
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14
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Anstöter CS, Verlet JRR. Photoelectron imaging of the SO 3 anion: vibrational resolution in photoelectron angular distributions*. Mol Phys 2021. [DOI: 10.1080/00268976.2020.1821921] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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15
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Castellani ME, Avagliano D, González L, Verlet JRR. Site-Specific Photo-oxidation of the Isolated Adenosine-5'-triphosphate Dianion Determined by Photoelectron Imaging. J Phys Chem Lett 2020; 11:8195-8201. [PMID: 32886886 DOI: 10.1021/acs.jpclett.0c02089] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
Photoelectron imaging of the isolated adenosine-5'-triphosphate dianion excited to the 1ππ* states reveals that electron emission is predominantly parallel to the polarization axis of the light and arises from subpicosecond electron tunneling through the repulsive Coulomb barrier (RCB). The computed RCB shows that the most probable electron emission site is on the amino group of adenine. This is consistent with the photoelectron imaging: excitation to the 1ππ* states leads to an aligned ensemble distributed predominantly parallel to the long axis of adenine; the subsequent electron tunneling site is along this axis; and the negatively charged phosphate groups guide the outgoing electron mostly along this axis at long range. Imaging of electron tunneling from polyanions combined with computational chemistry may offer a general route for probing the intrinsic photo-oxidation site and dynamics as well as the overall structure of complex isolated species.
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Affiliation(s)
| | - Davide Avagliano
- Institute of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Str. 17, 1090 Vienna, Austria
| | - Leticia González
- Institute of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Str. 17, 1090 Vienna, Austria
| | - Jan R R Verlet
- Department of Chemistry, Durham University, Durham DH1 3LE, United Kingdom
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16
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Anstöter CS, Curchod BFE, Verlet JRR. Geometric and electronic structure probed along the isomerisation coordinate of a photoactive yellow protein chromophore. Nat Commun 2020; 11:2827. [PMID: 32499507 PMCID: PMC7272410 DOI: 10.1038/s41467-020-16667-x] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2020] [Accepted: 05/15/2020] [Indexed: 01/29/2023] Open
Abstract
Understanding the connection between the motion of the nuclei in a molecule and the rearrangement of its electrons lies at the heart of chemistry. While many experimental methods have been developed to probe either the electronic or the nuclear structure on the timescale of atomic motion, very few have been able to capture both these changes in concert. Here, we use time-resolved photoelectron imaging to probe the isomerisation coordinate on the excited state of an isolated model chromophore anion of the photoactive yellow protein. By probing both the electronic structure changes as well as nuclear dynamics, we are able to uniquely measure isomerisation about a specific bond. Our results demonstrate that the photoelectron signal dispersed in time, energy and angle combined with calculations can track the evolution of both electronic and geometric structure along the adiabatic state, which in turn defines that chemical transformation. Resolving concerted nuclear and electronic motion in real-time is a primary goal in chemistry. The authors monitor nuclear and valence electronic dynamics in the excited state single-bond isomerisation of a chromophore of photoactive yellow protein, using time-resolved photoelectron imaging and electronic structure calculations.
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Affiliation(s)
- Cate S Anstöter
- Department of Chemistry, Durham University, Durham, DH1 3LE, UK
| | | | - Jan R R Verlet
- Department of Chemistry, Durham University, Durham, DH1 3LE, UK.
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17
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Verlet JRR, Anstöter CS, Bull JN, Rogers JP. Role of Nonvalence States in the Ultrafast Dynamics of Isolated Anions. J Phys Chem A 2020; 124:3507-3519. [PMID: 32233436 PMCID: PMC7212518 DOI: 10.1021/acs.jpca.0c01260] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
![]()
Nonvalence states
of neutral molecules (Rydberg states) play important
roles in nonadiabatic dynamics of excited states. In anions, such
nonadiabatic transitions between nonvalence and valence states have
been much less explored even though they are believed to play important
roles in electron capture and excited state dynamics of anions. The
aim of this Feature Article is to provide an overview of recent experimental
observations, based on time-resolved photoelectron imaging, of valence
to nonvalence and nonvalence to valence transitions in anions and
to demonstrate that such dynamics may be commonplace in the excited
state dynamics of molecular anions and cluster anions.
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Affiliation(s)
- Jan R R Verlet
- Department of Chemistry, Durham University, Durham DH1 3LE, United Kingdom
| | - Cate S Anstöter
- Department of Chemistry, Durham University, Durham DH1 3LE, United Kingdom
| | - James N Bull
- School of Chemistry, Norwich Research Park, University of East Anglia, Norwich NR4 7TJ, United Kingdom
| | - Joshua P Rogers
- Department of Chemistry, Durham University, Durham DH1 3LE, United Kingdom
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18
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Castellani ME, Anstöter CS, Verlet JRR. On the stability of a dipole-bound state in the presence of a molecule. Phys Chem Chem Phys 2019; 21:24286-24290. [PMID: 31663558 DOI: 10.1039/c9cp04942h] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Dipole-bound states (DBSs) are diffuse non-valence molecular orbitals of anions where the electron is bound by the permanent dipole moment of the neutral core. Here, an experimental study of the stability of such orbitals under the influence of a perturbing molecular alkyl chain is presented. Photodetachment action and photoelectron imaging spectroscopy of five para-substituted phenolate anions with progressively longer alkyl chains show that the DBS survives in all cases, suggesting that the perturbation of the orbital is not critical to the existence of the DBS.
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19
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Rogers JP, Anstöter CS, Verlet JRR. Evidence of Electron Capture of an Outgoing Photoelectron Wave by a Nonvalence State in (C 6F 6) n. J Phys Chem Lett 2018; 9:2504-2509. [PMID: 29694047 DOI: 10.1021/acs.jpclett.8b00739] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Frequency-resolved photoelectron spectra are presented for (C6F6) n- with n = 1-5 that show that C6F6- is solvated by neutral C6F6 molecules. Direct photodetachment channels of C6F6- are observed for all n, leaving the neutral in the S0 ground state or triplet states, T1 and T2. For n ≥ 2, an additional indirect electron loss channel is observed when the triplet-state channels open. This indirect emission appears to arise from the electron capture of the outgoing photoelectron s-wave by a neutral solvent molecule through an anion nonvalence state. The same process is not observed for the S0 detachment channel because the outgoing electron wave is predominantly a p-wave. Our results show that anion nonvalence states can act as electron-accepting states in cluster environments and can be viewed as precursor states for diffuse states of liquid C6F6.
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Affiliation(s)
- Joshua P Rogers
- Department of Chemistry , Durham University , Durham DH1 3LE , United Kingdom
| | - Cate S Anstöter
- Department of Chemistry , Durham University , Durham DH1 3LE , United Kingdom
| | - Jan R R Verlet
- Department of Chemistry , Durham University , Durham DH1 3LE , United Kingdom
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20
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Ultrafast dynamics of low-energy electron attachment via a non-valence correlation-bound state. Nat Chem 2018; 10:341-346. [PMID: 29461530 DOI: 10.1038/nchem.2912] [Citation(s) in RCA: 47] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2017] [Accepted: 11/15/2017] [Indexed: 11/09/2022]
Abstract
The primary electron-attachment process in electron-driven chemistry represents one of the most fundamental chemical transformations with wide-ranging importance in science and technology. However, the mechanistic detail of the seemingly simple reaction of an electron and a neutral molecule to form an anion remains poorly understood, particularly at very low electron energies. Here, time-resolved photoelectron imaging was used to probe the electron-attachment process to a non-polar molecule using time-resolved methods. An initially populated diffuse non-valence state of the anion that is bound by correlation forces evolves coherently in ∼30 fs into a valence state of the anion. The extreme efficiency with which the correlation-bound state serves as a doorway state for low-energy electron attachment explains a number of electron-driven processes, such as anion formation in the interstellar medium and electron attachment to fullerenes.
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21
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Anstöter CS, Gartmann TE, Stanley LH, Bochenkova AV, Verlet JRR. Electronic structure of the para-dinitrobenzene radical anion: a combined 2D photoelectron imaging and computational study. Phys Chem Chem Phys 2018; 20:24019-24026. [DOI: 10.1039/c8cp04877k] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
2D photoelectron spectroscopy combined with high-level ab initio calculations provides insights into the dissociative electron attachment of para-dinitrobenzene.
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Affiliation(s)
- Cate S. Anstöter
- Department of Chemistry
- Durham University
- Durham DH1 3LE
- UK
- Department of Chemistry
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22
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Anstöter CS, Dean CR, Verlet JRR. Sensitivity of Photoelectron Angular Distributions to Molecular Conformations of Anions. J Phys Chem Lett 2017; 8:2268-2273. [PMID: 28471670 DOI: 10.1021/acs.jpclett.7b00726] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
An anion photoelectron imaging study probing the sensitivity of the photoelectron angular distribution (PAD) to conformational changes is presented. The PADs of a series of para-substituted phenolate anions is compared with those calculated using the Dyson orbital formalization. Good agreement was attained for the two observed direct detachment channels of all anions, except for the lowest-energy detachment channel of para-ethyl phenolate for which two conformations exist that yield very different PADs. The conformational freedom leads to an observed PAD that is the incoherent sum of the PADs from all conformers populated under experimental conditions. In contrast, a second detachment channel shows no sensitivity to the conformational flexibility of para-ethyl phenolate. Our results show that PADs can provide detailed information about the electronic structure of the anion and its conformations.
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Affiliation(s)
- Cate S Anstöter
- Department of Chemistry, Durham University , Durham DH1 3LE, United Kingdom
| | - Charlie R Dean
- Department of Chemistry, Durham University , Durham DH1 3LE, United Kingdom
| | - Jan R R Verlet
- Department of Chemistry, Durham University , Durham DH1 3LE, United Kingdom
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23
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Stanley LH, Anstöter CS, Verlet JRR. Resonances of the anthracenyl anion probed by frequency-resolved photoelectron imaging of collision-induced dissociated anthracene carboxylic acid. Chem Sci 2017; 8:3054-3061. [PMID: 28451374 PMCID: PMC5380881 DOI: 10.1039/c6sc05405f] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2016] [Accepted: 02/01/2017] [Indexed: 01/04/2023] Open
Abstract
The use of CID and photoelectron spectroscopy of organic carboxylic acid anions is discussed as a route to studying the dynamics of resonances in polyaromatic hydrocarbon (PAH) anions.
Resonances in polyaromatic hydrocarbon (PAH) anions are key intermediates in a number of processes such as electron transfer in organic electronics and electron attachment in the interstellar medium. Here we present a frequency- and angle-resolved photoelectron imaging study of the 9-anthracenyl anion generated through collision induced dissociation (CID) of its electrosprayed deprotonated anthracene carboxylic acid anion. We show that a number of π* resonances are active in the first 2.5 eV above the threshold. The photoelectron spectra and angular distributions revealed that nuclear dynamics compete with autodetachment for one of the resonances, while higher-lying resonances were dominated by prompt autodetachment. Based on electronic structure calculations, these observations were accounted for on the basis of the expected autodetachment rates of the resonances. Virtually no ground state recovery was observed, suggesting that the smallest deprotonated PAH that leads to ground state recovery is the tetracenyl anion, for which clear thermionic emission has been observed. The use of CID and photodissociation of organic carboxylic acid anions is discussed as a route to studying the dynamics of resonances in larger PAH anions.
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Affiliation(s)
| | - Cate S Anstöter
- Department of Chemistry , Durham University , Durham DH1 3LE , UK .
| | - Jan R R Verlet
- Department of Chemistry , Durham University , Durham DH1 3LE , UK .
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24
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Bull JN, Verlet JRR. Dynamics of π*-resonances in anionic clusters of para-toluquinone. Phys Chem Chem Phys 2017; 19:26589-26595. [DOI: 10.1039/c7cp03628k] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
Frequency-resolved photoelectron spectroscopy applied to mass-selected cluster anions is an insightful approach to characterise the dynamics of π*-resonances with microsolvation.
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Affiliation(s)
- James N. Bull
- Department of Chemistry
- Durham University
- Durham DH1 3LE
- UK
- School of Chemistry
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25
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Anstöter CS, Dean CR, Verlet JRR. Chromophores of chromophores: a bottom-up Hückel picture of the excited states of photoactive proteins. Phys Chem Chem Phys 2017; 19:29772-29779. [DOI: 10.1039/c7cp05766k] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
Many photoactive proteins contain chromophores based on para-substituted phenolate anions which are an essential component of their electronic structure.
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26
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West CW, Bull JN, Verlet JRR. Charged Particle Imaging of the Deprotonated Octatrienoic Acid Anion: Evidence for a Photoinduced Cyclization Reaction. J Phys Chem Lett 2016; 7:4635-4640. [PMID: 27809535 DOI: 10.1021/acs.jpclett.6b02302] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Photoelectron spectroscopy of the deprotonated octatrienoic acid anion, [C7H9-CO2]-, shows the formation of [C7H9]- and loss of H- at hν = 4.13 eV. Using velocity map imaging, the H- fragment was characterized to have a Boltzmann-like kinetic energy distribution consistent with dissociation on a ground electronic state. Similar dynamics were not observed at hν = 4.66 eV even though there is clear evidence for recovery of the ground electronic state of [C7H9-CO2]-. In accord with supporting electronic structure calculations, the production of H- at hν = 4.13 eV is explained by excited-state dissociation of CO2 to form [C7H9]-, which subsequently undergoes a ring-closure isomerization reaction to yield toluene and H-. These data represent the first evidence for a photoinduced ring-closing isomerization reaction in an anionic polyene and provides an interesting example of the rich anion dynamics that can occur in the detachment continuum and that can influence photochemistry.
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Affiliation(s)
- Christopher W West
- Department of Chemistry, Graduate School of Science, Kyoto University , Kitashirakawa Oiwake-cho, Sakyo-Ku, Kyoto 606-8502, Japan
| | - James N Bull
- School of Chemistry, University of Melbourne , Parkville, Melbourne, Victoria 3010, Australia
| | - Jan R R Verlet
- Department of Chemistry, University of Durham , Durham DH1 3LE, United Kingdom
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27
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Horke DA, Watts HM, Smith AD, Jager E, Springate E, Alexander O, Cacho C, Chapman RT, Minns RS. Hydrogen Bonds in Excited State Proton Transfer. PHYSICAL REVIEW LETTERS 2016; 117:163002. [PMID: 27792360 DOI: 10.1103/physrevlett.117.163002] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2016] [Indexed: 06/06/2023]
Abstract
Hydrogen bonding interactions between biological chromophores and their surrounding protein and solvent environment significantly affect the photochemical pathways of the chromophore and its biological function. A common first step in the dynamics of these systems is excited state proton transfer between the noncovalently bound molecules, which stabilizes the system against dissociation and principally alters relaxation pathways. Despite such fundamental importance, studying excited state proton transfer across a hydrogen bond has proven difficult, leaving uncertainties about the mechanism. Through time-resolved photoelectron imaging measurements, we demonstrate how the addition of a single hydrogen bond and the opening of an excited state proton transfer channel dramatically changes the outcome of a photochemical reaction, from rapid dissociation in the isolated chromophore to efficient stabilization and ground state recovery in the hydrogen bonded case, and uncover the mechanism of excited state proton transfer at a hydrogen bond, which follows sequential hydrogen and charge transfer processes.
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Affiliation(s)
- D A Horke
- Center for Free-Electron Laser Science, DESY, Notkestrasse 85, 22607 Hamburg, Germany
| | - H M Watts
- Chemistry, University of Southampton, Highfield, Southampton SO17 1BJ, United Kingdom
| | - A D Smith
- Chemistry, University of Southampton, Highfield, Southampton SO17 1BJ, United Kingdom
| | - E Jager
- Chemistry, University of Southampton, Highfield, Southampton SO17 1BJ, United Kingdom
| | - E Springate
- Central Laser Facility, STFC Rutherford Appleton Laboratory, Didcot, Oxfordshire OX11 0QX, United Kingdom
| | - O Alexander
- Central Laser Facility, STFC Rutherford Appleton Laboratory, Didcot, Oxfordshire OX11 0QX, United Kingdom
| | - C Cacho
- Central Laser Facility, STFC Rutherford Appleton Laboratory, Didcot, Oxfordshire OX11 0QX, United Kingdom
| | - R T Chapman
- Central Laser Facility, STFC Rutherford Appleton Laboratory, Didcot, Oxfordshire OX11 0QX, United Kingdom
| | - R S Minns
- Chemistry, University of Southampton, Highfield, Southampton SO17 1BJ, United Kingdom
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28
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Anstöter CS, Bull JN, Verlet JR. Ultrafast dynamics of temporary anions probed through the prism of photodetachment. INT REV PHYS CHEM 2016. [DOI: 10.1080/0144235x.2016.1203522] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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29
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Anstöter CS, West CW, Bull JN, Verlet JRR. The Vitamin E Radical Probed by Anion Photoelectron Imaging. J Phys Chem B 2016; 120:7108-13. [DOI: 10.1021/acs.jpcb.6b05271] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Cate S. Anstöter
- Department
of Chemistry, Durham University, Durham DH1 3LE, United Kingdom
| | | | - James N. Bull
- Department
of Chemistry, Durham University, Durham DH1 3LE, United Kingdom
| | - Jan R. R. Verlet
- Department
of Chemistry, Durham University, Durham DH1 3LE, United Kingdom
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30
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Stavros VG, Verlet JRR. Gas-Phase Femtosecond Particle Spectroscopy: A Bottom-Up Approach to Nucleotide Dynamics. Annu Rev Phys Chem 2016; 67:211-32. [PMID: 26980306 DOI: 10.1146/annurev-physchem-040215-112428] [Citation(s) in RCA: 51] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
We summarize how gas-phase ultrafast charged-particle spectroscopy has been used to provide an understanding of the photophysics of DNA building blocks. We focus on adenine and discuss how, following UV excitation, specific interactions determine the fates of its excited states. The dynamics can be probed using a systematic bottom-up approach that provides control over these interactions and that allows ever-larger complexes to be studied. Starting from a chromophore in adenine, the excited state decay mechanisms of adenine and chemically substituted or clustered adenine are considered and then extended to adenosine mono-, di-, and trinucleotides. We show that the gas-phase approach can offer exquisite insight into the dynamics observed in aqueous solution, but we also highlight stark differences. An outlook is provided that discusses some of the most promising developments in this bottom-up approach.
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Affiliation(s)
- Vasilios G Stavros
- Department of Chemistry, University of Warwick, Coventry, CV4 7AL, United Kingdom;
| | - Jan R R Verlet
- Department of Chemistry, University of Durham, Durham, DH1 3LE, United Kingdom;
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31
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West CW, Bull JN, Woods DA, Verlet JR. Photoelectron imaging as a probe of the repulsive Coulomb barrier in the photodetachment of antimony tartrate dianions. Chem Phys Lett 2016. [DOI: 10.1016/j.cplett.2015.12.041] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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32
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Bull JN, West CW, Verlet JRR. Anion resonances and above-threshold dynamics of coenzyme Q0. Phys Chem Chem Phys 2015; 17:16125-35. [PMID: 26030180 DOI: 10.1039/c5cp02145f] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Abstract
Temporary radical anions (resonances) of isolated co enzyme Q0 (CQ0) and their associated above-threshold dynamics have been studied using frequency-, angle-, and time-resolved photoelectron imaging (FAT-PI). Experimental energetics and dynamics are supported with ab initio calculations. All results support that CQ0 exhibits similar resonances and energetics compared with the smaller para-benzoquinone subunit, which is commonly considered as a prototype electrophore for larger biological para-quinone species. However, the above-threshold dynamics in CQ0 relative to para-benzoquinone show significantly enhanced prompt detachment compared with internal conversion, particularly around the photoexcitation energy of 3.10 eV. The change in dynamics can be attributed to a combination of an increase in the shape character of the optically-accessible resonance at this energy, a decrease in the autodetachment lifetime due to the higher density of states in the neutral, and a decrease in the probability that the wavepacket formed in the Franck-Condon window can access the local conical intersection in CQ0 over the timescale of autodetachment. Overall, this study serves as a clear example in understanding the trends in spectroscopy and dynamics in relating a simple prototypical para-quinone electrophore to a more complex biochemical species.
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Affiliation(s)
- James N Bull
- Department of Chemistry, Durham University, South Road, DH1 3LE, UK.
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33
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West CW, Bull JN, Hudson AS, Cobb SL, Verlet JRR. Excited State Dynamics of the Isolated Green Fluorescent Protein Chromophore Anion Following UV Excitation. J Phys Chem B 2015; 119:3982-7. [DOI: 10.1021/acs.jpcb.5b01432] [Citation(s) in RCA: 45] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
| | - James N. Bull
- Department of Chemistry, Durham University, Durham, DH1 3LE, United Kingdom
| | - Alex S. Hudson
- Department of Chemistry, Durham University, Durham, DH1 3LE, United Kingdom
| | - Steven L. Cobb
- Department of Chemistry, Durham University, Durham, DH1 3LE, United Kingdom
| | - Jan R. R. Verlet
- Department of Chemistry, Durham University, Durham, DH1 3LE, United Kingdom
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34
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Bull JN, West CW, Verlet JRR. On the formation of anions: frequency-, angle-, and time-resolved photoelectron imaging of the menadione radical anion. Chem Sci 2015; 6:1578-1589. [PMID: 29560245 PMCID: PMC5811081 DOI: 10.1039/c4sc03491k] [Citation(s) in RCA: 41] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2014] [Accepted: 12/17/2014] [Indexed: 11/24/2022] Open
Abstract
Frequency-, angle-, and time-resolved photoelectron imaging of gas-phase menadione (vitamin K3) radical anions was used to show that quasi-bound resonances of the anion can act as efficient doorway states to produce metastable ground electronic state anions on a sub-picosecond timescale. Several anion resonances have been experimentally observed and identified with the assistance of ab initio calculations, and ground state anion recovery was observed across the first 3 eV above threshold. Time-resolved measurements revealed the mechanism of electronic ground state anion formation, which first involves a cascade of very fast internal conversion processes to a bound electronic state that, in turn, decays by slower internal conversion to the ground state. Autodetachment processes from populated resonances are inefficient compared with electronic relaxation through internal conversion. The mechanistic understanding gained provides insight into the formation of radical anions in biological and astrochemical systems.
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Affiliation(s)
- James N Bull
- Department of Chemistry , Durham University , South Road , DH1 3LE , UK .
| | - Christopher W West
- Department of Chemistry , Durham University , South Road , DH1 3LE , UK .
| | - Jan R R Verlet
- Department of Chemistry , Durham University , South Road , DH1 3LE , UK .
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35
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Horke DA, Chatterley AS, Bull JN, Verlet JRR. Time-Resolved Photodetachment Anisotropy: Gas-Phase Rotational and Vibrational Dynamics of the Fluorescein Anion. J Phys Chem Lett 2015; 6:189-94. [PMID: 26263111 DOI: 10.1021/jz5022526] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
The photoelectron signal of the singly deprotonated fluorescein anion is found to be highly dependent on the relative polarization between pump and probe pulses, and time-resolved photodetachment anisotropy (TR-PA) is developed as a probe of the rotational dynamics of the chromophore. The total photoelectron signal shows both rotational and vibrational wavepacket dynamics, and we demonstrate how TR-PA can readily disentangle these dynamical processes. TR-PA in fluorescein presents specific opportunities for its development as a probe for rotational dynamics in large biomolecules as fluorescein derivatives are commonly incorporated in complex biomolecules and have been used extensively in time-resolved fluorescence anisotropy measurements, to which TR-PA is a gas-phase analogue.
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Affiliation(s)
- Daniel A Horke
- †Center for Free-Electron Laser Science, DESY, Notkestrasse 85, 22607 Hamburg, Germany
| | - Adam S Chatterley
- ‡Ultrafast X-ray Science Laboratory, Cyclotron Road, Berkeley, California 94720, United States
| | - James N Bull
- §Department of Chemistry, University of Durham, South Road, Durham DH1 3LE, United Kingdom
| | - Jan R R Verlet
- §Department of Chemistry, University of Durham, South Road, Durham DH1 3LE, United Kingdom
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36
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West CW, Bull JN, Antonkov E, Verlet JRR. Anion resonances of para-benzoquinone probed by frequency-resolved photoelectron imaging. J Phys Chem A 2014; 118:11346-54. [PMID: 25301059 DOI: 10.1021/jp509102p] [Citation(s) in RCA: 51] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
The resonant attachment of a free electron to a closed shell neutral molecule and the interplay between the following electron detachment and electronic relaxation channels represents a fundamental but common process throughout chemical and biochemical systems. The new methodology of anion frequency-resolved photoelectron imaging is detailed and used to map out molecular excited state dynamics of gas-phase para-benzoquinone, which is the electron accepting moiety in many biological electron-transfer chains. Three-dimensional spectra of excitation energy, electron kinetic energy, and electron ejection anisotropy reveal clear fingerprints of excited and intermediate state dynamics. The results show that many of the excited states are strongly coupled, providing a route to forming the ground state radical anion, despite the fact that the electron is formally unbound in the excited states. The relation of our method to electron impact attachment studies and the key advantages, including the extension to time-resolved dynamics and to larger molecular systems, are discussed.
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Affiliation(s)
- Christopher W West
- Department of Chemistry, Durham University , Durham, DH1 3LE, United Kingdom
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37
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Chatterley AS, West CW, Roberts GM, Stavros VG, Verlet JRR. Mapping the Ultrafast Dynamics of Adenine onto Its Nucleotide and Oligonucleotides by Time-Resolved Photoelectron Imaging. J Phys Chem Lett 2014; 5:843-848. [PMID: 26274076 DOI: 10.1021/jz500264c] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
The intrinsic photophysics of nucleobases and nucleotides following UV absorption presents a key reductionist step toward understanding the complex photodamage mechanisms occurring in DNA. The decay mechanism of adenine in particular has been the focus of intense investigation, as has how these correlate to those of its more biologically relevant nucleotide and oligonucleotides in aqueous solution. Here, we report on time-resolved photoelectron imaging of the deprotonated 3'-deoxy-adenosine-5'-monophosphate nucleotide and the adenosine di- and trinucleotides. Through a comparison of gas- and solution-phase experiments and available theoretical studies, the dynamics of the base are shown to be relatively insensitive to the surrounding environment. The decay mechanism primarily involves internal conversion from the initially populated (1)ππ* states to the ground state. The relaxation dynamics of the adenosine oligonucleotides are similar to those of the nucleobase, in contrast to the aqueous oligonucleotides, where a fraction of the ensemble forms long-lived excimer states.
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Affiliation(s)
- Adam S Chatterley
- †Department of Chemistry, University of Durham, Durham DH1 3LE, United Kingdom
- ‡Department of Chemistry, University of Warwick, Coventry CV4 7AL, United Kingdom
| | - Christopher W West
- †Department of Chemistry, University of Durham, Durham DH1 3LE, United Kingdom
| | - Gareth M Roberts
- ‡Department of Chemistry, University of Warwick, Coventry CV4 7AL, United Kingdom
| | - Vasilios G Stavros
- ‡Department of Chemistry, University of Warwick, Coventry CV4 7AL, United Kingdom
| | - Jan R R Verlet
- †Department of Chemistry, University of Durham, Durham DH1 3LE, United Kingdom
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38
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Chatterley AS, West CW, Stavros VG, Verlet JRR. Time-resolved photoelectron imaging of the isolated deprotonated nucleotides. Chem Sci 2014. [DOI: 10.1039/c4sc01493f] [Citation(s) in RCA: 42] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Time-resolved photoelectron spectroscopy of deprotonated nucleotides provides new insights into their relaxation dynamics.
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Affiliation(s)
- Adam S. Chatterley
- Department
- of Chemistry
- University of Durham
- Durham DH1 3LE, United Kingdom
- Department of Chemistry
| | | | - Vasilios G. Stavros
- Department of Chemistry
- University of Warwick
- Coventry CV4 7AL, United Kingdom
| | - Jan R. R. Verlet
- Department
- of Chemistry
- University of Durham
- Durham DH1 3LE, United Kingdom
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39
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Roberts GM, Stavros VG. The role of πσ* states in the photochemistry of heteroaromatic biomolecules and their subunits: insights from gas-phase femtosecond spectroscopy. Chem Sci 2014. [DOI: 10.1039/c3sc53175a] [Citation(s) in RCA: 119] [Impact Index Per Article: 11.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023] Open
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40
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Verlet JRR, Horke DA, Chatterley AS. Excited states of multiply-charged anions probed by photoelectron imaging: riding the repulsive Coulomb barrier. Phys Chem Chem Phys 2014; 16:15043-52. [DOI: 10.1039/c4cp01667j] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Recent progress towards understanding the repulsive Coulomb barrier in multiply-charged anion using photoelectron spectroscopy is discussed.
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Affiliation(s)
| | - Daniel A. Horke
- Center for Free-Electron Laser Science
- DESY
- 22607 Hamburg, Germany
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41
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Chatterley AS, Horke DA, Verlet JRR. Effects of resonant excitation, pulse duration and intensity on photoelectron imaging of a dianion. Phys Chem Chem Phys 2014; 16:489-96. [DOI: 10.1039/c3cp53235f] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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42
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Staniforth M, Stavros VG. Recent advances in experimental techniques to probe fast excited-state dynamics in biological molecules in the gas phase: dynamics in nucleotides, amino acids and beyond. Proc Math Phys Eng Sci 2013; 469:20130458. [PMID: 24204191 PMCID: PMC3780818 DOI: 10.1098/rspa.2013.0458] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2013] [Accepted: 08/07/2013] [Indexed: 11/23/2022] Open
Abstract
In many chemical reactions, an activation barrier must be overcome before a chemical transformation can occur. As such, understanding the behaviour of molecules in energetically excited states is critical to understanding the chemical changes that these molecules undergo. Among the most prominent reactions for mankind to understand are chemical changes that occur in our own biological molecules. A notable example is the focus towards understanding the interaction of DNA with ultraviolet radiation and the subsequent chemical changes. However, the interaction of radiation with large biological structures is highly complex, and thus the photochemistry of these systems as a whole is poorly understood. Studying the gas-phase spectroscopy and ultrafast dynamics of the building blocks of these more complex biomolecules offers the tantalizing prospect of providing a scientifically intuitive bottom-up approach, beginning with the study of the subunits of large polymeric biomolecules and monitoring the evolution in photochemistry as the complexity of the molecules is increased. While highly attractive, one of the main challenges of this approach is in transferring large, and in many cases, thermally labile molecules into vacuum. This review discusses the recent advances in cutting-edge experimental methodologies, emerging as excellent candidates for progressing this bottom-up approach.
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Affiliation(s)
| | - Vasilios G. Stavros
- Department of Chemistry, University of Warwick, Library Road, Coventry CV4 7AL, UK
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Horke DA, Chatterley AS, Verlet JRR. Influence of the repulsive Coulomb barrier on photoelectron spectra and angular distributions in a resonantly excited dianion. J Chem Phys 2013; 139:084302. [DOI: 10.1063/1.4818597] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023] Open
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West CW, Hudson AS, Cobb SL, Verlet JRR. Communication: Autodetachment versus internal conversion from the S1 state of the isolated GFP chromophore anion. J Chem Phys 2013; 139:071104. [DOI: 10.1063/1.4819078] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023] Open
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Horke DA, Li Q, Blancafort L, Verlet JRR. Ultrafast above-threshold dynamics of the radical anion of a prototypical quinone electron-acceptor. Nat Chem 2013; 5:711-7. [PMID: 23881504 DOI: 10.1038/nchem.1705] [Citation(s) in RCA: 71] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2013] [Accepted: 06/04/2013] [Indexed: 12/30/2022]
Abstract
Quinones feature prominently as electron acceptors in nature. Their electron-transfer reactions are often highly exergonic, for which Marcus theory predicts reduced electron-transfer rates because of a free-energy barrier that occurs in the inverted region. However, the electron-transfer kinetics that involve quinones can appear barrierless. Here, we consider the intrinsic properties of the para-benzoquinone radical anion, which serves as the prototypical electron-transfer reaction product involving a quinone-based acceptor. Using time-resolved photoelectron spectroscopy and ab initio calculations, we show that excitation at 400 and 480 nm yields excited states that are unbound with respect to electron loss. These excited states are shown to decay on a sub-40 fs timescale through a series of conical intersections with lower-lying excited states, ultimately to form the ground anionic state and avoid autodetachment. From an isolated electron-acceptor perspective, this ultrafast stabilization mechanism accounts for the ability of para-benzoquinone to capture and retain electrons.
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Affiliation(s)
- Daniel A Horke
- Department of Chemistry, University of Durham, Durham DH1 3LE, UK
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Chatterley AS, Johns AS, Stavros VG, Verlet JRR. Base-specific ionization of deprotonated nucleotides by resonance enhanced two-photon detachment. J Phys Chem A 2013; 117:5299-305. [PMID: 23642262 DOI: 10.1021/jp4041315] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Abstract
The intrinsic ionization energy of a base in DNA plays a critical role in determining the energies at which damage mechanisms may emerge. Here, a two-photon resonance-enhanced ionization scheme is presented that utilizes the (1)ππ* transition, localized on the DNA base, to elucidate the base-specific ionization in a deprotonated nucleotide. In contrast to previous reports, the scheme is insensitive to competing ionization channels arising from the sugar-phosphate backbone. Using this approach, we demonstrate that for all bases except guanine, the lowest electron detachment energy corresponds to detachment from the sugar-phosphate backbone and allows us to determine the lowest adiabatic ionization energy for the other three bases for the first time in an isolated nucleotide.
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Affiliation(s)
- Adam S Chatterley
- Department of Chemistry, University of Warwick, Coventry CV4 7AL, United Kingdom
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Mooney CRS, Horke DA, Chatterley AS, Simperler A, Fielding HH, Verlet JRR. Taking the green fluorescence out of the protein: dynamics of the isolated GFP chromophore anion. Chem Sci 2013. [DOI: 10.1039/c2sc21737f] [Citation(s) in RCA: 68] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
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48
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Horke DA, Roberts GM, Lecointre J, Verlet JRR. Velocity-map imaging at low extraction fields. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2012; 83:063101. [PMID: 22755609 DOI: 10.1063/1.4724311] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
We present a velocity-map imaging (VMI) setup for photoelectron imaging that utilizes low electric extraction fields. This avoids any complications that could arise from electrostatic interactions between the extraction field and the molecular properties that are probed and has a minimal effect on the trajectory of ions in ion beam experiments. By using an attractive potential supplied to the detector, and keeping the electrodes at ground (zero) potential, we show that fringe fields between the VMI arrangement and the vacuum chamber can be eliminated, which is important in experiments on ions.
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Affiliation(s)
- Daniel A Horke
- Department of Chemistry, University of Durham, South Road, DH1 3LE Durham, United Kingdom
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Horke DA, Chatterley AS, Verlet JRR. Femtosecond Photoelectron Imaging of Aligned Polyanions: Probing Molecular Dynamics through the Electron-Anion Coulomb Repulsion. J Phys Chem Lett 2012; 3:834-8. [PMID: 26286406 DOI: 10.1021/jz3000933] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
The first time-resolved photoelectron imaging study of a polyanion is presented. Using the alignment induced through resonance excitation, the photoelectron angular distributions can be qualitatively understood in terms of the position of localized excess charges on the molecular skeleton, which influence the photoemission dynamics. Pump-probe experiments are used to demonstrate that the photoelectron angular distribution is also sensitive to molecular dynamics. This is shown here for the rotational dynamics of a polyanion, in which the photoelectron anisotropy tracks the rotational coherence as it dephases. The methodology can in principle be applied to general molecular dynamics in large polyanions, providing a new route to studying ultrafast structural dynamics in complex gas-phase systems.
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Affiliation(s)
- Daniel A Horke
- Department of Chemistry, University of Durham, DH1 3LE Durham, United Kingdom
| | - Adam S Chatterley
- Department of Chemistry, University of Durham, DH1 3LE Durham, United Kingdom
| | - Jan R R Verlet
- Department of Chemistry, University of Durham, DH1 3LE Durham, United Kingdom
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Horke DA, Chatterley AS, Verlet JRR. Effect of internal energy on the repulsive Coulomb barrier of polyanions. PHYSICAL REVIEW LETTERS 2012; 108:083003. [PMID: 22463527 DOI: 10.1103/physrevlett.108.083003] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/14/2011] [Indexed: 05/28/2023]
Abstract
The nature of the repulsive Coulomb barrier in isolated molecular polyanions is studied by means of the photodetachment dynamics of the S(1) excited state of the fluorescein dianion which is bound solely by the repulsive Coulomb barrier. Photoelectron spectra reveal a feature at a constant electron kinetic energy, regardless of the excitation energy. This is explained by using an adiabatic tunneling picture for electron loss through successive repulsive Coulomb barriers correlating to vibrationally excited states. This physical picture is supported by time-resolved photoelectron spectra, showing that the tunneling lifetime is also invariant with excitation energy.
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Affiliation(s)
- Daniel A Horke
- Department of Chemistry, University of Durham, Durham, United Kingdom
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