Metal-metal and metal-ligand bonding at a QTAIM catastrophe: a combined experimental and theoretical charge density study on the alkylidyne cluster Fe3(μ-H)(μ-COMe)(CO)10

Computational Comparative Study of the Binding of Americium with N-Donor Ligands

The accessibility of multiple valence states of americium (Am) inspired redox-based protocols aimed at efficient separation of trivalent Am (Am3+) from trivalent lanthanides (Ln3+) alternative to the traditional liquid-liquid extraction. This requires an extensive understanding of the coordination chemistry of Am in its various accessible valence states in the aqueous phase. In this work, by means of DFT calculations, the coordination of AmIII-VI with five typical N-donor ligands, i.e., terpyridine (tpy), bispyrazinylpyridine (dpp), bistriazinylpyridine (BTP), bistriazinyl bipyridine (BTBP), and bistrazinyl phenanthroline (BTPhen), was studied in terms of energy and topological analysis. The results show that the exchange of aqua ligands of hydrated ions by N-donor ligands is an entropy-driven process and enthalpically unfavorable. Topological analysis suggests a distinct mechanism of BTP to modulate the redox potential of Am(III) in that BTP can assist the relay of the leaving electron of AmIII, while the other N-donor ligands can detain the oxidation of Am by offering their electron instead. This comparative study enriches our understanding of the coordination chemistry of high-valent Am with N-donor ligands and recommends the ligand design toward the modulation of redox potentials of hydrated Am(III) ions.

Electron Density Analysis of Metal-Metal Bonding in a Ni4 Cluster Featuring Ferromagnetic Exchange

We present a combined experimental and theoretical study of the nature of the proposed metal-metal bonding in the tetranuclear cluster Ni₄(NP^tBu₃)₄, which features four nickel(I) centers engaged in strong ferromagnetic coupling. High-resolution single-crystal synchrotron X-ray diffraction data collected at 25 K provide an accurate geometrical structure and a multipole model electron density description. Topological analysis of the electron density in the Ni₄N₄ core using the quantum theory of atoms in molecules clearly identifies the bonding as an eight-membered ring of type [Ni-N-]₄ without direct Ni-Ni bonding, and this result is generally corroborated by an analysis of the energy density distribution. In contrast, the calculated bond delocalization index of ∼0.6 between neighboring Ni atoms is larger than what has been found for other bridged metal-metal bonds and implies direct Ni-Ni bonding. Similar support for the presence of direct Ni-Ni bonding is found in the interacting quantum atom approach, an energy decomposition scheme, which suggests the presence of stabilizing Ni-Ni bonding interactions with an exchange-correlation energy contribution approximately 50% of that of the Ni-N interactions. Altogether, while the direct interactions between neighboring Ni centers are too weak and sterically constrained to bear the signature of a topological bond critical point, other continuous measures clearly indicate significant Ni-Ni bonding. These metal-metal bonding interactions likely mediate direct ferromagnetic exchange, giving rise to the high-spin ground state of the molecule.

The Speciation of Americium Cations in Neat Water Implicated from DFT Studies

The recent observed manipulatable redox potential of trivalent americium ion in the aqueous phase by modifying an electrode offers an alternative to accomplish the separation. In order to understand extensively the speciation of Am, which is the prerequisite to understanding the mechanism of the oxidation of Am, we conducted a density functional study to identify the potential species of Am in its tri-, tetra-, and pentavalent states in aqueous phase. Based on the speciation analysis, the calculations implicate a stepwise mechanism for the oxidation of hydrated Am(III), which predominantly exists in its hydrated monatomic cationic form (Am³⁺(aq)). The two sequential one-electron oxidation processes first produce AmO²⁺(aq), which may establish an equilibrium with Am⁴⁺(aq), and the AmO²⁺(aq) may then evolve to the dioxo americyl(V) ion. These results suggest the copresence of Am⁴⁺(aq) and AmO²⁺(aq), which builds a bridge for the conversion of americium ion from a monatomic ion to dioxo americyl(V).

Estimating electron density at the bond critical point through atomic Hirshfeld surfaces

Interatomic surfaces often carry information related to the electron distribution in a molecule or crystal, not only being a visual aid but also enabling quantitative analyses. Under certain conditions, atomic Hirshfeld surfaces present a high resemblance to the interatomic surfaces obtained through the quantum theory of atoms in molecules (QTAIM), with the advantage of being easily calculated, even for crystal structures determined at low resolutions (i.e. when a charge-density refinement is not performed). Here an empirical relation between the curvedness property of the Hirshfeld surfaces and the electron density at the bond critical point for certain types of covalent and coordination interactions involving carbon atoms has been obtained. The exponential function was tested to estimate the electron density in different crystalline systems, and the highest deviation from reference values obtained through QTAIM was just 16%. Additionally, fine details of this fit may be salient to the difference in electronegativity of the atoms involved in the bond.

Towards developing a criterion to characterize non-covalent bonds: a quantum mechanical study

Chemical bonds are central to chemistry, biology, and allied fields, but still, the criterion to characterize an interaction as a non-covalent bond has not been studied rigorously.

Comparison between Chlorine-Shared and π-Halogen Bonds Involving Substituted Phosphabenzene and ClF Molecules

Ab initio MP2/aug-cc-pVTZ calculations have been carried out in order to study the nature of P···Cl halogen bonding interaction between a phosphorus atom in an aromatic ring in para-substituted phosphabenzene (PPBZ) and ClF molecule. The interaction of PPBZ with ClF results in two different types of complexes: (i) complex formation through the chlorine-shared halogen bond (T1-X-PPBZ·ClF) and (ii) complex formation via halogen-π interaction (T2-X-PPBZ·ClF). T1-X-PPBZ·ClF complexes are found to be more stable than the T2-X-PPBZ·ClF complexes. This work also presents a general criterion to distinguish a chlorine-shared halogen bond from a traditional halogen bond and sheds light on the formation of the chlorine-shared halogen bond. The binding energy of T1-X-PPBZ·ClF complexes correlates well with the negative electrostatic potential of the P atom and PA value of the substituted PPBZ. The properties of both T1-X-PPBZ·ClF and T2-X-PPBZ·ClF complexes are analyzed using atom-in-molecule, natural bond orbital, and symmetry-adapted perturbation theory calculations. The variation of the Cl-F bond distances and the redshifts of the ν(ClF) vibration resulting from the interaction with PPBZs are discussed.

Density functional theory based studies on the adsorption of rare-earth ions from hydrated nitrate salt solutions on g-C3N4 monolayer surface

This article represents density functional theory (DFT) based comparative analysis on six trivalent rare-earth ions (RE³⁺; RE: Y, La, Ce, Sm, Eu and Gd) absorption, from the respective nitrate-hexahydrate salts, on graphitic carbon nitride (g-C₃N₄) 2D monolayer, and the photocatalytic properties of the RE³⁺ adsorbed g-C₃N₄ systems (g-C₃N₄/RE³⁺) based on the ground-state electronic structure calculations. Structure, stability and coordination chemistry of two configurations of each hydrated RE-salt system are discussed in detail. Both DFT (B3LYP/SDD) and semi-empirical (Sparkle/PM7) calculations identify the central N₆ vacancy of pristine g-C₃N₄ as the most suitable site for RE³⁺ adsorption. Bader's QTAIM, Mayer bond order and charge population analyses (ADCH, CHELPG and DDEC) are performed to describe the bond characteristics within the systems under study. Thermochemical calculations suggest that the adsorption process is thermodynamically more feasible for higher atomic number (Z) RE³⁺ [Sm³⁺, Eu³⁺ and Gd³⁺], compared to lower-Z RE³⁺ [Y³⁺, La³⁺ and Ce³⁺] ions. Besides, the better photocatalytic properties of higher-Z RE³⁺ adsorbed g-C₃N₄ systems are revealed from better HOMO-LUMO delocalization, decreased HOMO-LUMO gap, increased softness, higher electrophilicity and electron transfer parameter, compared to pristine or lower-Z RE³⁺ adsorbed g-C₃N₄ systems, as obtained from Hirshfeld orbital compositions, density of states and condensed Fukui function analyses.

Differential uranyl(v) oxo-group bonding between the uranium and metal cations from groups 1, 2, 4, and 12; a high energy resolution X-ray absorption, computational, and synthetic study

Uranyl Pacman takes them all: the bonding of s- and d-block cations to uranyl is compared by experiment, spectroscopy and theory.

The uranyl(vi) ‘Pacman’ complex [(UO₂)(py)(H₂L)] A (L = polypyrrolic Schiff-base macrocycle) is reduced by Cp₂Ti(η²-Me₃SiC Created by potrace 1.16, written by Peter Selinger 2001-2019 ]]> CSiMe₃) and [Cp₂TiCl]₂ to oxo-titanated uranyl(v) complexes [(py)(Cp₂Ti^IIIOUO)(py)(H₂L)] 1 and [(ClCp₂Ti^IVOUO)(py)(H₂L)] 2. Combination of Zr^II and Zr^IV synthons with A yields the first Zr^IV–uranyl(v) complex, [(ClCp₂ZrOUO)(py)(H₂L)] 3. Similarly, combinations of Ae⁰ and Ae^II synthons (Ae = alkaline earth) afford the mono-oxo metalated uranyl(v) complexes [(py)₂(ClMgOUO)(py)(H₂L)] 4, [(py)₂(thf)₂(ICaOUO)(py) (H₂L)] 5; the zinc complexes [(py)₂(XZnOUO)(py)(H₂L)] (X = Cl 6, I 7) are formed in a similar manner. In contrast, the direct reactions of Rb or Cs metal with A generate the first mono-rubidiated and mono-caesiated uranyl(v) complexes; monomeric [(py)₃(RbOUO)(py)(H₂L)] 8 and hexameric [(MOUO)(py)(H₂L)]₆ (M = Rb 8b or Cs 9). In these uranyl(v) complexes, the pyrrole N–H atoms show strengthened hydrogen-bonding interactions with the endo-oxos, classified computationally as moderate-strength hydrogen bonds. Computational DFT MO (density functional theory molecular orbital) and EDA (energy decomposition analysis), uranium M₄ edge HR-XANES (High Energy Resolution X-ray Absorption Near Edge Structure) and 3d4f RIXS (Resonant Inelastic X-ray Scattering) have been used (the latter two for the first time for uranyl(v) in 7 (ZnI)) to compare the covalent character in the U^V–O and O–M bonds and show the 5f orbitals in uranyl(vi) complex A are unexpectedly more delocalised than in the uranyl(v) 7 (ZnI) complex. The O_exo–Zn bonds have a larger covalent contribution compared to the Mg–O_exo/Ca–O_exo bonds, and more covalency is found in the U–O_exo bond in 7 (ZnI), in agreement with the calculations.

Organic Compounds of Actinyls: Systematic Computational Assessment of Structural and Topological Properties in [AnO2(C2O4) n](2 n-2)- (An = U, Np, Pu, Am; n = 1-3) Complexes

Exploring the bonding features between organics and actinide elements is a fundamental topic in nuclear waste separation. In this work, [AnO₂(C₂O₄) _n]^{(2 n-2)-} (An = U, Np, Pu, and Am; n = 1-3) complexes have been characterized by density functional theory. The actinyl oxalate complexes are found to exhibit the typical An-O_yl, An-O_eq bonds and O_yl-An-O_yl angles. Interatomic interaction analyzed by electron density difference, charge decomposition analysis, charges population, bond order, electron localization function, and quantum theory of atom in molecules indicates that An-O_eq bonds are ionic (closed-shell) bonding interaction with a small degree of covalent character. The similarities and differences between isomers have been discussed in the actinide coordination chemistry, and the orbital interactions also have been investigated through total, partial, and overlap population density of state diagrams. Besides, the electrostatic potential was used to predict the adsorption sites on the molecular vdW surface.

Reactive Dimerization of an N-Heterocyclic Plumbylene: C-H Activation with PbII

The N-heterocyclic plumbylene [Fe{(η⁵ -C₅ H₄ )NSiMe₃ }₂ Pb:] is in equilibrium with an unprecedented dimer in solution, whose formation involves the cleavage of a strong C-H bond and concomitant formation of a Pb-C and an N-H bond. According to a mechanistic DFT assessment, dimer formation does not involve direct Pb^II insertion into a cyclopentadienyl C-H bond, but is best described as an electrophilic substitution. The bulkier plumbylene [Fe{(η⁵ -C₅ H₄ )NSitBuMe₂ }₂ Pb:] shows no dimerization, but compensates its electrophilicity by the formation of an intramolecular Fe-Pb bond.

Hapticity of asymmetric rhodium-allyl compounds in the light of real-space bonding indicators

Rhodium boryl complexes are valuable catalysts for hydro- or diboration reactions of alkenes, but can also react with ketones (R2C=O) and imines (R2C=NR′) giving rise to insertion products having formally Rh–R2C–O/NR′–B linkages. The resulting molecular structures, however, may show complex metal–ligand and ligand–ligand interaction patterns with often unclear metal–ligand connectivities (hapticities, ηn). In order to assign the correct hapticity in a set of asymmetric rhodium-allyl compounds with molecular structures indicating η1−5bonding, a comprehensive DFT study was conducted. The study comprises determination of a variety of real-space bonding indicators derived from computed electron and pair densities according to the AIM, ELI-D, NCI, and DORI topological and surface approaches, which uncover the metal–ligand connectivties and suggest an asymmetric ligand–metal donation/metal–ligand back-donation framework according to the Dewar–Chatt–Duncanson model.

Unusual Fluorine Substitution Effect on S···Cl Bonding between Sulfides and Atomic Chlorine

A theoretical investigation on the interaction of various sulfides and their fluorinated counterparts (H₂S, HSF, F₂S, CH₃SH, CH₃SF, CH₂FSH, CH₂FSF, NH₂SH, NH₂SF) with atomic chlorine has been carried out using density functional theory (DFT) based LC-BLYP/aug-cc-pVTZ and sophisticated ab initio CCSD(T)/aug-cc-pVQZ methods. The present study is intended to discuss the influence of the substituents implanted at the sulfur atom on the bonding parameters. The optimized geometries reveal that intermolecular S···Cl distances are short and range between 2.423 and 2.561 Å. A strong contraction of the S-F bond is also predicted. Two-center-three-electron S···Cl bonds are formed; the interaction energies are large and range from -33.9 to -70.1 kJ mol^-1. Very surprisingly, the interaction energies are greater and the intermolecular distances are shorter for F-substituted sulfides than for unsubstituted ones. This is in complete contrast with the lower proton affinities and less negative electrostatic potentials of fluorinated sulfides. AIM analysis, the charge transfer from the sulfur atom to the Cl atom, and the spin densities on the Cl and S atoms are considered to explain this unusual behavior. The hyperconjugation energies from the LP(F) to the σ*(S-Cl) antibonding orbital can be considered as one of the stabilizing factors for the greater stability of the fluorinated complexes over the nonfluorinated ones.

Molecular motions in a fluxional (η6-indenyl)tricarbonylchromium hemichelate: a density functional theory molecular dynamics study

A comprehensive Density Functional Theory (DFT) study is reported on molecular motions occurring in a hemichelate complex, formally composed of the (η3-2-methylallyl)Pd(ii) cation bonded to a (η6-indenyl)tricarbonylchromium anion, that has been recognized as being highly fluxional in a previous experimental study (C. Werlé, M. Hamdaoui, C. Bailly, X.-F. Le Goff, L. Brelot and J.-P. Djukic, J. Am. Chem. Soc., 2013, 135, 1715-1718). Its dynamics can be decomposed into three molecular motions: (i) the indenyl ligand can switch from a η1 to a η3 binding mode to Pd, (ii) the Cr(CO)3 moiety forms loose interactions with Pd, and can potentially rotate around the aryl-Cr axis, and (iii) the binding mode of the 2-methylallyl ligand to Pd may undergo partial decoordination or rotation around the Pd-C axis. Herein, DFT based molecular dynamics simulations have been performed to provide microscopic insights into the dynamical behaviour of the complex on a 100 ps timescale. QTAIM analyses have been performed over trajectories to investigate the rearrangement of its electronic structure over time. Next, free energy calculations, following the metadynamics approach, have been undertaken to compute thermodynamic and kinetic data relative to the molecular rearrangements occurring in the complex. The results show that the fastest motion is the ring slippage of the indenyl ligand, and that this motion is coupled with the rotation of the 2-methylallyl ligand. Conversely, the Cr(CO)3 rotation is significantly slower, however, a fast rocking motion is observed, consisting of transient approaches of carbonyl ligands to Pd. QTAIM analyses point to loose Pd/carbonyl and Pd/Cr interactions on average, that significantly evolve over time as fluxional motions occur.

The truth is out there: the metal-π interactions in crystal of Cr(CO)3(pcp) as revealed by the study of vibrational smearing of electron density

The vibrational smearing of electron density was studied in the crystal of complex of Cr(CO)3 with [2.2]paracyclophane. The combination of theoretical and experimental methods, including periodic calculations and screening of DFT calculated and multipole-decomposed electron densities, was utilized to reveal the vibrational smearing of electron density and its influence on the multipole-constructed electron density. The multipole model, commonly used to treat the high-resolution X-ray diffraction data, was shown to be rather inaccurate in description of electron density and its vibrational smearing in metal-π complex where the interchange between diatomic interactions can occur. Namely, some bond critical points can be hidden while analyzing multipole-decomposed electron density with proved effects of vibrational smearing even if the deconvolution problem is overcome by using the invariom approach. On the contrary, the recently proposed “clouds of critical point variation” (CCPV) approach is demonstrated as the route to gather all reasonable bonding trends and to reconstruct static electron density pattern in metal-π complexes.

A Systematic Theoretical Study of UC6: Structure, Bonding Nature, and Spectroscopy

The study of uranium carbides has received renewed attention in recent years due to the potential use of these compounds as fuels in new generations of nuclear reactors. The isomers of the UC₆ cluster were determined by DFT and ab initio methods. The structures obtained using SC-RECP for U were generally consistent with those obtained using an all-electron basis set (ZORA-SARC). The CCSD(T) calculations indicated that two isomers had similar energies and may coexist in laser evaporation experiments. The nature of the U-C bonds in the different isomers was examined via a topological analysis of the electron density, and the results indicated that the U-C bonds are predominantly closed-shell (ionic) interactions with a certain degree of covalent character in all cases, particularly in the linear species. The IR and UV-vis spectra of the isomers were theoretically simulated to provide information that can be used to identify the isomers of UC₆ in future experiments.

π-Backbonding and non-covalent interactions in the JohnPhos and polyfluorothiolate complexes of gold(i)

We studied the influence of changing the degree of fluorination in eight new gold(i) derivatives containing both JohnPhos phosphine and polyfluorinated thiolates: [Au(SR_F)(JPhos)], JPhos = P(C₆H₄-C₆H₅)(t-But)₂ and R_F = C₆F₅ (1), C₆HF₄ (2), C₆H₃F₂-3,5 (3), C₆H₃F₂-2,4 (4), C₆H₄F-2 (5), C₆H₄F-3 (6), C₆H₄F-4 (7) and CF₃ (8). We determined the molecular and crystal structures of all new compounds by single crystal X-ray diffraction. Later, we characterised the chemical bonding scenario with quantum chemical topology tools, specifically the Quantum Theory of Atoms in Molecules (QTAIM) and the analysis of the NCI-index. Our QTAIM results indicate that while the linear S-Au-P moiety is unaffected by the variation of the fluorine content on the thiolates and that Au-S and Au-P bond strengths are mostly constant for all compounds in the series, the π character of gold bonds seems to be modified by the fluorination of the substituents at the thiolate ligand. Besides, the examination of the NCI-index reveals the presence of weak Au-π_Phenyl non-covalent interactions in all compounds. Overall, this study shows the relevance of (i) the π-backbonding properties of the metal centre and (ii) different non-covalent interactions in the stability of JohnPhos gold(i) compounds.

Toward a Rigorous Definition of a Strength of Any Interaction Between Bader's Atomic Basins

Strength of interaction between Bader's atomic basins, enclosed by zero-flux surfaces of electron distribution, was proposed to be a measure of elastic deformation of an interaction. The set containing 53 atomic aggregate and covering all range of interaction strength (from van der Waals interactions to triple covalent bonds) was calculated by DFT and perturbation theory methods. Further analysis was performed to seek correlations between various local quantities based on electron density and effective force constants of stretching diatomic vibrations. The linear trend between effective force constants and the potential energy density at the (3, -1) critical point of electron distribution was found. This correlation was improved by the integration of the potential energy density over an interbasin zero-flux surface of electron density. Simple mechanical explanation of established trends is presented. The correlations can be further used to at least semiquantitatively compare any pair of interactions between Bader's atomic basins.

A DFT study of 3d (d1–d10) transition-metal phthalocyanines (TMPcs): Bonding natures, electronic adsorption spectroscopy

The structures, electronic properties, bonding characters and UV–Vis spectra of [Formula: see text] ([Formula: see text]–[Formula: see text]) transition-metal phthalocyanines (TMPcs) molecules have been studied with different density function theory (DFT) methods. The calculated structural parameters agree well with previous experimental or theoretical values. Natural Population Analysis (NPA) charge revealed that [Formula: see text]–[Formula: see text] hybridizations occur when [Formula: see text] TM atoms are involved in chemical bondings. The spin magnetic moments of TMPcs are mainly from the contribution of [Formula: see text] electrons. Conceptual density functional theory (CDFT) results indicate that [Formula: see text] TMPcs molecules are willing to accept further electrons. The TM–N chemical bonds show very weak covalent nature, and are consistent with bond order analyses. Time-dependent density function theory (TD-DFT) calculations were carried out to simulate the UV–Vis spectra, and corresponding electronic transfers for dominant peaks were also obtained.

Homopolar dihydrogen bonding in ligand stabilized diberyllium hydride complexes, Be2(CH3)2H2L2 (L = H(-), CO, N-heterocyclic carbene and CN(-))

The structure and bonding of diberyllium hydride complexes Be2(CH3)2H2L2, where L = H(-) (), CO (), NHC () and CN(-) () were studied in detail and compared with isostructural diborane (). The bonding in Be2(CH3)2H2L2 was analyzed considering the interaction of two Be(CH3)L fragments with the bridging (μ-H)2 fragment. The geometrical and molecular orbital (MO) analyses indicate that the extent of back donation from Be→L (L = CO, NHC and CN(-)) is less in Be2(CH3)2H2L2 as compared to that in Be(CH3)L fragments. The NBO, MO and QTAIM analyses indicate a significant charge concentration at the bridging (μ-H)2 in Be2(CH3)2H2L2, whereas charge depletion is observed at the (μ-H)2 fragment in diborane. The accumulation of electron density at the bridging (μ-H)2 is duly reflected in the detection of a (μ-H)-(μ-H) bond path in Be2(CH3)2H2L2, in spite of having longer (μ-H)-(μ-H) distances. The interaction between the bridging H-atoms in diberyllium hydride complexes can be considered as homopolar hydride-hydride dihydrogen bonding. The direction of the charge flow is from (μ-H)2 to BH2 in diborane, whereas from Be(CH3)L to (μ-H)2 in Be2(CH3)2H2L2. Hence, the bridging (μ-H)2 fragments in Be2(CH3)2H2L2 are electron rich as compared to the (μ-H)2 fragment in diborane. The experimental report of the ring opening of the (Ar)NHC (Ar = 2,4,6-trimethylphenyl) ligand through hydride transfer from [Be(CH3)H((Ar)NHC)]2 corroborates well with the presence of electron rich bridging (μ-H)2 in diberyllium hydride complexes.

Exploring the Interaction Natures in Plutonyl (VI) Complexes with Topological Analyses of Electron Density

The interaction natures between Pu and different ligands in several plutonyl (VI) complexes are investigated by performing topological analyses of electron density. The geometrical structures in both gaseous and aqueous phases are obtained with B3LYP functional, and are generally in agreement with available theoretical and experimental results when combined with all-electron segmented all-electron relativistic contracted (SARC) basis set. The Pu- O y l bond orders show significant linear dependence on bond length and the charge of oxygen atoms in plutonyl moiety. The closed-shell interactions were identified for Pu-Ligand bonds in most complexes with quantum theory of atoms in molecules (QTAIM) analyses. Meanwhile, we found that some Pu-Ligand bonds, like Pu-OH(-), show weak covalent. The interactive nature of Pu-ligand bonds were revealed based on the interaction quantum atom (IQA) energy decomposition approach, and our results indicate that all Pu-Ligand interactions is dominated by the electrostatic attraction interaction as expected. Meanwhile it is also important to note that the quantum mechanical exchange-correlation contributions can not be ignored. By means of the non-covalent interaction (NCI) approach it has been found that some weak and repulsion interactions existed in plutonyl(VI) complexes, which can not be distinguished by QTAIM, can be successfully identified.

Combined analysis of chemical bonding in a CuIIdimer using QTAIM, Voronoi tessellation and Hirshfeld surface approaches

Interaction of 1-(1H-pyrazol-5-yl)ethanone oxime (H2PzOx) with copper(II) chloride in the presence of pyridine afforded a binuclear discrete [Cu2(HPzOx)2Cl2py2] complex, which was characterized by Fourier transform–IR and electron paramagnetic resonance (EPR) spectra, magnetochemistry and high-resolution X-ray diffraction experiments. Multipole refinement of X-ray diffraction data and density-functional theory (DFT) calculations of an isolated molecule allowed charge and spin distributions to be obtained for this compound. Magnetochemistry data, EPR spectra and DFT calculations of an isolated molecule show antiferromagnetic coupling between copper(II) ions. The spin distribution suggests an exchange pathwayviathe bridging pyrazole ring in the equatorial plane of the CuN4Cl coordination polyhedron, thus providing support for the classical superexchange mechanism; the calculated value of the magnetic coupling constant −2Jis equal to 220 cm−1, which compares well with the experimental value of 203 ± 2 cm−1. Chemical connectivity was derived by Bader's `quantum theory of atoms in molecules' and compared with Voronoi tessellation and Hirshfeld surface representations of crystal space. All methodologies gave a similar qualitative and semi-quantitative description of intra- and intermolecular connectivity.

Mechanistic insights into the reductive dehydroxylation pathway for the biosynthesis of isoprenoids promoted by the IspH enzyme

Here, we report an integrated quantum mechanics/molecular mechanics (QM/MM) study of the bio-organometallic reaction pathway of the 2H⁺/2e^- reduction of (E)-4-hydroxy-3-methylbut-2-enyl pyrophosphate (HMBPP) into the so called universal terpenoid precursors isopentenyl pyrophosphate (IPP) and dimethylallyl pyrophosphate (DMAPP), promoted by the IspH enzyme. Our results support the viability of the bio-organometallic pathway through rotation of the OH group of HMBPP away from the [Fe₄S₄] cluster at the core of the catalytic site, to become engaged in a H-bond with Glu126. This rotation is synchronous with π-coordination of the C2 0000000000000000000000000000000000 0000000000000000000000000000000000 0000000000000000000000000000000000 0000000000000000000000000000000000 0000000000000000000000000000000000 0000000000000000000000000000000000 0000000000000000000000000000000000 0000000000000000000000000000000000 0000000000000000000000000000000000 0000000000000000000000000000000000 0000000000000000000000000000000000 0000000000000000000000000000000000 0000000000000000000000000000000000 0000000000000000000000000000000000 0000000000000000000000000000000000 1111111111111111111111111111111111 1111111111111111111111111111111111 0000000000000000000000000000000000 0000000000000000000000000000000000 0000000000000000000000000000000000 0000000000000000000000000000000000 1111111111111111111111111111111111 1111111111111111111111111111111111 0000000000000000000000000000000000 0000000000000000000000000000000000 0000000000000000000000000000000000 0000000000000000000000000000000000 0000000000000000000000000000000000 0000000000000000000000000000000000 0000000000000000000000000000000000 0000000000000000000000000000000000 0000000000000000000000000000000000 0000000000000000000000000000000000 0000000000000000000000000000000000 C3 double bond of HMBPP to the apical Fe atom of the [Fe₄S₄] cluster. Dehydroxylation of HMBPP is triggered by a proton transfer from Glu126 to the OH group of HMBPP. The reaction pathway is completed by competitive proton transfer from the terminal phosphate group to the C2 or C4 atom of HMBPP.

In quest of a superhalogen supported covalent bond involving a noble gas atom

The possibility of having neutral Xe-bound compounds mediated by some representative transition metal fluorides of general formula MX3 (where M=Ru, Os, Rh, Ir, Pd, Pt, Ag, Au and X=F) has been investigated through density functional theory based calculations. Nature of interaction between MX3 and Xe moieties has been characterized through detailed electron density, charge density and bond energy decomposition analyses. The feasibility of having compounds of general formula XeMX3 at 298 K has been predicted through thermodynamic considerations. The nature of interaction in between Xe and M atoms is partly covalent in nature and the orbital interaction is the dominant contributor toward these interactions as suggested by energy decomposition analysis.

Charge density investigations on [2,2]-paracyclophane – in data we trust

Four datasets on [2,2]-paracyclophane were collected in-house and at the Advanced Photon Source at two different temperatures for charge density investigation. Global data quality indicators such as high resolution, high I/σ(I) values, low merging R values and high multiplicity were matched for all four datasets. The structural parameters did not show significant differences, but the synchrotron data depicted deficiencies in the topological analysis. In retrospect these deficiencies could be assigned to the low quality of the innermost data, which could have been identified by e.g. merging R values for only these reflections. In the multipole refinement these deficiencies could be monitored using DRK-plot and residual density analysis. In this particular example the differences in the topological parameters were relatively small but significant.

Metastable behavior of noble gas inserted tin and lead fluorides

The metastable FNgEF and FNgEF₃ (E = Sn, Pb; Ng = Kr–Rn) are the first reported neutral compounds possessing Ng–Sn and Ng–Pb covalent bonds.

On the stability of noble gas bound 1-tris(pyrazolyl)borate beryllium and magnesium complexes

1-Tris(pyrazolyl)borate beryllium and magnesium cationic complexes are found to bind Ar–Rn atoms quite effectively.