Experimental investigation of the absolute enthalpies of formation of 2,3-, 2,4-, and 3,4-pyridynes

Through bond and through space interactions in dehydro-diazine radicals: a case study of 3c-5e interactions

Owing to the 3c-5e (3-centred-5-electrons) interactions between two nitrogen lone pairs and a radical electron, the dehydrodiazine radical isomers are very interesting from the fundamental point of view. Among them, pyrimidine has three (1a-1c), pyridazine has two (2a and 2b) and pyrazine has only one (3a) radical isomer. Based on quantum chemical calculations at the (U)B3LYP, (U)M06-2X, (U)BLYP, CBS-QB3 and (U)CCSD(T) levels with cc-pVTZ as the basis set, we found the 4-dehydropyrimidine (1b) radical to be the most stable isomer among the three pyrimidine radicals, followed by the 2-dehydropyrimidine (1a) and 5-dehydropyrimidine (1c) radical isomers. In the case of pyridazine, 3-dehydro radical isomer (2a) is more stable than 4-dehydropyridazine (2b). Bond dissociation energy (BDE) calculations and estimation of radical stabilization energies (RSE) using isodesmic reactions revealed the stability order among the six isomeric diazine radicals as 1c < 2b < 2a < 1a < 3a < 1b. Spin densities at each radical centre and non-zero values at nitrogen centres provided information about the extent of delocalization of radical electrons, which was consistent with the relative stability order of all the isomers. The multiconfigurational CASSCF and natural bond orbital (NBO) calculations suggested the presence of direct through space interactions (between lone pairs and a radical, TS) that play a dominant role over the through bond (through intervening bonds, TB) interactions in deciding the stability order. To confirm these results, we have also estimated the proton affinities (PAs) for each nitrogen atom and compared them with their respective parent diazines, where lowering of the PA values convincingly envisaged the extent and strength of interactions between the nitrogen and radical centre. Atoms-in-molecules (AIM) analysis and estimation of hyperfine coupling constants have also been performed to verify these results. All these results showed that the through space interaction between the lone pair and the radical electron is very important for the electronic structural and stability aspects in dehydrodiazine radicals.

Does a Nitrogen Lone Pair Lead to Two Centered-Three Electron (2c-3e) Interactions in Pyridyl Radical Isomers?

Each of the three isomeric pyridyl radicals (2-, 3-, and 4-dehydropyridines) contains a lone pair and an unpaired electron. As a result, a potential two centered-three electron interaction between the radical electron and the lone pair through-space (TS) and/or through-bond (TB) can exist that may influence the stability of the radicals. Due to the change in geometrical positions relative to each other, the strength of interaction can be varied. In this study, we investigated the structural and stability aspects of pyridyl radical isomers with a major emphasis on the interaction of a nitrogen lone pair with the radical center. In order to obtain evidence for such interactions, protonated and N-oxide analogues of the corresponding isomeric pyridyl radicals have been considered in such a way to understand the consequences due to unavailability of the lone pair. Similarly, electron attachment and detachment energies at the radical center (vertical detachment energy, VDE, of corresponding anions and vertical ionization energy, VIE, of radical isomers) have been calculated to find out the interaction trend upon modification at the radical center. Different levels of theory including (U)B3LYP/cc-pVTZ, (U)M06/cc-pVTZ, CBS-QB3, single-point energy calculations at (U)CCSD(T)/cc-pVTZ, and multireference CASSCF/cc-pVTZ methods have been employed in this regard. A closer inspection of geometries, relative stability order, spin density, electrostatic potential, molecular orbitals, NBO analysis, and vibrational analysis have showed a strong and stabilizing TS interaction between the radical center and the lone pair in the case of the 2-pyridyl radical. On the other hand, the 4-pyridyl radical showed stabilizing interactions only via TB coupling, whereas the TS interaction is nonexistent. Despite the presence of both interactions in the case of the 3-pyridyl radical, their overall influence is less effective toward stability.

Dehydro-oxazole, thiazole and imidazole radicals: insights into the electronic structure, stability and reactivity aspects

Computations on the effect of heteroatoms in the structural, stability and reactivity aspects of the oxazole, thiazole and imidazole radicals.

Pyridynes and indolynes as building blocks for functionalized heterocycles and natural products

This feature article showcases the use of pyridynes and indolynes to construct functionalized heterocycles and complex natural products.

Regioselective reactions of 3,4-pyridynes enabled by the aryne distortion model

The pyridine heterocycle continues to play a vital role in the development of human medicines. More than 100 currently-marketed drugs contain this privileged unit, which remains highly sought after synthetically. We report an efficient means to access di- and tri-substituted pyridines in an efficient and highly controlled manner using transient 3,4-pyridyne intermediates. Previous efforts to employ 3,4-pyridynes for the construction of substituted pyridines have been hampered by a lack of regiocontrol or the inability to later manipulate an adjacent directing group. The newly developed strategy relies on the use of proximal halide or sulfamate substituents to perturb pyridyne distortion, which in turn governs regioselectivities in nucleophilic addition and cycloaddition reactions. Following trapping of in situ-generated pyridynes, the neighboring directing groups may be removed or exploited using versatile metal-catalyzed cross-coupling reactions. This methodology now renders 3,4-pyridynes useful synthetic building blocks for the creation of highly decorated derivatives of the medicinally privileged pyridine heterocycle.

An efficient computational model to predict the synthetic utility of heterocyclic arynes

Think before you act: a computational approach is reported for evaluating the synthetic potential of heterocyclic arynes. Routine and rapid calculations of arene dehydrogenation energies and aryne angle distortion predict the likelihood that a given hetaryne can be generated, as well as the degree of regioselectivity expected in a reaction between a given hetaryne and a nucleophilic trapping agent.