A Theoretical Investigation of Xanthophyll–Protein Hydrogen Bonding in the Photosystem II Antenna

Conformation of Light-Harvesting Complex II Trimer Depends upon Its Binding Site

The light-harvesting complex II (LHCII) trimer in plants functions as a major antenna complex and a quencher to protect it from photooxidative damage. Theoretical studies on the structure of an LHCII trimer have demonstrated that excitation energy transfer between chlorophylls (Chls) in LHCII can be modulated by its exquisite conformational fluctuation. However, conformational changes depending on its binding location have not yet been investigated, even though reorganization of protein complexes occurs by physiological regulations. In this study, we investigated conformational differences in LHCII by comparing published structures of an identical LHCII trimer in the three different photosystem supercomplexes from the green alga Chlamydomonas reinhardtii. Our results revealed distinct differences in Chl configurations as well as polypeptide conformations of the LHCII trimers depending on its binding location. We propose that these configurational differences readily modulate the function of LHCII and possibly lead to a change in excitation-energy flow over the photosynthetic supercomplex.

Violaxanthin inhibits nonphotochemical quenching in light-harvesting antenna of Chromera velia

Non-photochemical quenching (NPQ) is a photoprotective mechanism in light-harvesting antennae. NPQ is triggered by chloroplast thylakoid lumen acidification and is accompanied by violaxanthin de-epoxidation to zeaxanthin, which further stimulates NPQ. In the present study, we show that violaxanthin can act in the opposite direction to zeaxanthin because an increase in the concentration of violaxanthin reduced NPQ in the light-harvesting antennae of Chromera velia. The correlation overlapped with a similar relationship between violaxanthin and NPQ as observed in isolated higher plant light-harvesting complex II. The data suggest that violaxanthin in C. velia can act as an inhibitor of NPQ, indicating that violaxanthin has to be removed from the vicinity of the protein to reach maximal NPQ.

Distinct photolytic mechanisms and products for different dissociation species of ciprofloxacin

As many antibiotics are ionizable and may have different dissociation forms in the aquatic environment, we hypothesized that the different dissociation species have disparate photolytic pathways, products, and kinetics, and adopted ciprofloxacin (CIP) as a case to test this hypothesis. Simulated sunlight experiments and matrix calculations were performed to differentiate the photolytic reactivity for each dissociation species (H4CIP(3+), H3CIP(2+), H2CIP(+), HCIP(0), and CIP(-)). The results prove that the five dissociation species do have dissimilar photolytic kinetics and products. H4CIP(3+) mainly undergoes stepwise cleavage of the piperazine ring, while H2CIP(+) mainly undergoes defluorination. For H3CIP(2+), HCIP(0), and CIP(-), the major photolytic pathway is oxidation. By density functional theory calculation, we clarified the defluorination mechanisms for the five dissociation species at the excited triplet states: All the five species can defluorinate by reaction with hydroxide ions (OH(-)) to form hydroxylated products, and H2CIP(+) can also undergo C-F bond cleavage to produce F(-) and a carbon-centered radical. This study is a first attempt to differentiate the photolytic products and mechanisms for different dissociation species of ionizable compounds. The results imply that for accurate ecological risk assessment of ionizable emerging pollutants, it is necessary to investigate the environmental photochemical behavior of all dissociation species.