Bridge-mediated excitation energy transfer pathways through protein media: a Slater determinant-based electronic coupling calculation combined with localized molecular orbitals

Electronic Couplings and Electrostatic Interactions Behind the Light Absorption of Retinal Proteins

The photo-functional chromophore retinal exhibits a wide variety of optical absorption properties depending on its intermolecular interactions with surrounding proteins and other chromophores. By utilizing these properties, microbial and animal rhodopsins express biological functions such as ion-transport and signal transduction. In this review, we present the molecular mechanisms underlying light absorption in rhodopsins, as revealed by quantum chemical calculations. Here, symmetry-adapted cluster-configuration interaction (SAC-CI), combined quantum mechanical and molecular mechanical (QM/MM), and transition-density-fragment interaction (TDFI) methods are used to describe the electronic structure of the retinal, the surrounding protein environment, and the electronic coupling between chromophores, respectively. These computational approaches provide successful reproductions of experimentally observed absorption and circular dichroism (CD) spectra, as well as insights into the mechanisms of unique optical properties in terms of chromophore-protein electrostatic interactions and chromophore-chromophore electronic couplings. On the basis of the molecular mechanisms revealed in these studies, we also discuss strategies for artificial design of the optical absorption properties of rhodopsins.

Spectral Tuning Mechanism of Photosynthetic Light-Harvesting Complex II Revealed by Ab Initio Dimer Exciton Model

Excited states of two kinds of bacteriochlorophyll (BChl) aggregates, B850 and B800, in photosynthetic light-harvesting complex II (LH2) are theoretically investigated by developing and using an extended exciton model considering efficiently evaluated excitonic coupling. Our exciton model based on dimer fragmentation is shown to reproduce the experimental absorption spectrum of LH2 with good accuracy, entailing their different redshifts originating from aggregations of B850 and B800. The systematic analysis has been performed on the spectra by quantitatively decomposing their spectral shift energies into the contributions of various effects: structural distortion, electrostatic, excitonic coupling, and charge-transfer (CT) effects. Our results show that the spectral redshift of B800 is mainly attributed to its electrostatic interaction with the protein environment, while that of B850 arises from the marked effect of the excitonic coupling between BChl units. The interchromophore CT excitation also plays a key role in the spectral redshift of B850. This CT effect can be effectively described using our dimer model. This suited characterization reveals that the pronounced CT effect originates from the characteristics of B850 that has closely spaced BChls as dimers. We highlight the importance of the refinement of the crystal structure with the use of quantum chemical methods for prediction of the spectrum.

Quantum mechanical molecular interactions for calculating the excitation energy in molecular environments: a first-order interacting space approach

Intermolecular interactions regulate the molecular properties in proteins and solutions such as solvatochromic systems. Some of the interactions have to be described at an electronic-structure level. In this study, a commutator for calculating the excitation energy is used for deriving a first-order interacting space (FOIS) to describe the environmental response to solute excitation. The FOIS wave function for a solute-in-solvent cluster is solved by second-order perturbation theory. The contributions to the excitation energy are decomposed into each interaction and for each solvent.

Influence of applied pressure on the probability of electronic energy transfer across a molecular dyad

A pair of covalently linked molecular dyads is described in which two disparate boron dipyrromethene dyes are separated by a tolane-like spacer. Efficient electronic energy transfer (EET) occurs across the dyad; the mechanism involves important contributions from both Förster-type coulombic interactions and Dexter-type electron exchange processes. The energy acceptor is equipped with long paraffinic chains that favor aggregation at high concentration or at low temperature. The aggregate displays red-shifted absorption and emission spectral profiles, relative to the monomer, such that EET is less efficient because of a weaker overlap integral. The donor unit is insensitive to applied pressure but this is not so for the acceptor, which has extended π-conjugation associated with appended styryl groups. Here, pressure reduces the effective π-conjugation length, leading to a new absorption band at higher energy. With increasing pressure, the overall EET probability falls but this effect is nonlinear and at modest pressure there is only a small recovery of donor fluorescence. This situation likely arises from compensatory phenomena such as restricted rotation and decreased dipole screening by the solvent. However, the probability of EET falls dramatically over the regime where the π-conjugation length is reduced owing to the presumed conformational exchange. It appears that the pressure-induced conformer is a poor energy acceptor.