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Chalanchi SM, Alkorta I, Elguero J, Quiñonero D. Hydrogen Bond versus Halogen Bond in Cation-Cation Complexes: Effect of the Solvent. Chemphyschem 2017; 18:3462-3468. [PMID: 28881408 DOI: 10.1002/cphc.201700819] [Citation(s) in RCA: 31] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2017] [Revised: 08/23/2017] [Indexed: 01/26/2023]
Abstract
Competition between hydrogen- (HB) and halogen-bonded (XB) 4-ammoniumpyridine and halogenammonium (NHn F3-n X+ ; n=0-3; X=F, Cl, Br, and I) cation-cation complexes are explored by means of DFT calculations. HB and XB minima structures are found for all systems in the gas phase. As the number of fluorine atoms increases, the HB complexes are more favored than those of XB. Proton transfer is generally observed in complexes with two, three, or four halogen atoms. The XB complexes evolve from traditional halogen bonds, to halogen-shared complexes, and to ionic complexes as the number of fluorine atoms increases. The dissociation transition states and their corresponding barriers are also characterized; the barriers increase as the number of fluorine atoms increases. The results if solvent effects are considered indicate that, even in an apolar solvent, such as n-hexane, most of the complexes have favorable binding energies. Atoms-in-molecules theory is used to analyze the complexes, and results in good correlations between electron density and total electron energy density (Η) values with the intermolecular bond length. According to the Η values obtained, the covalency of these interactions starts to manifest at distances around 72-74 % the sum of the van der Waals radii of the interacting atoms.
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Affiliation(s)
| | - Ibon Alkorta
- Instituto de Química Médica (CSIC), Juan de la Cierva, 3, 28006-, Madrid, Spain
| | - Jose Elguero
- Instituto de Química Médica (CSIC), Juan de la Cierva, 3, 28006-, Madrid, Spain
| | - David Quiñonero
- Departament de Química, Universitat de les Illes Balears, Crta. de Valldemossa km 7.5, 07122, Palma de Mallorca, Spain
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2
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Yang X, Yang F, Wu RZ, Yan CX, Zhou DG, Zhou PP, Yao X. Linear σ-hole⋯C O⋯σ-hole intermolecular interactions between carbon monoxide and dihalogen molecules XY (X, Y = Cl, Br). J Mol Graph Model 2017; 76:419-428. [DOI: 10.1016/j.jmgm.2017.07.026] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2017] [Revised: 07/23/2017] [Accepted: 07/25/2017] [Indexed: 12/21/2022]
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3
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Yang X, Yan CX, Yang F, Zhou DG, Zhou PP, Liu S. Linear σ-Hole Bonding Dimers and Trimers Between Dihalogen Molecules XY (X, Y=Cl, Br) and Carbon Monoxide. ChemistrySelect 2017. [DOI: 10.1002/slct.201700075] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Xing Yang
- State Key Laboratory of Applied Organic Chemistry; Key Laboratory of NonferrousMetal Chemistry and Resources Utilization of Gansu Province; College ofChemistry and Chemical Engineering; Lanzhou University; 222 South TianshuiRoad 730000 Lanzhou P. R. China
| | - Chao-Xian Yan
- State Key Laboratory of Applied Organic Chemistry; Key Laboratory of NonferrousMetal Chemistry and Resources Utilization of Gansu Province; College ofChemistry and Chemical Engineering; Lanzhou University; 222 South TianshuiRoad 730000 Lanzhou P. R. China
| | - Fan Yang
- State Key Laboratory of Applied Organic Chemistry; Key Laboratory of NonferrousMetal Chemistry and Resources Utilization of Gansu Province; College ofChemistry and Chemical Engineering; Lanzhou University; 222 South TianshuiRoad 730000 Lanzhou P. R. China
| | - Da-Gang Zhou
- State Key Laboratory of Applied Organic Chemistry; Key Laboratory of NonferrousMetal Chemistry and Resources Utilization of Gansu Province; College ofChemistry and Chemical Engineering; Lanzhou University; 222 South TianshuiRoad 730000 Lanzhou P. R. China
| | - Pan-Pan Zhou
- State Key Laboratory of Applied Organic Chemistry; Key Laboratory of NonferrousMetal Chemistry and Resources Utilization of Gansu Province; College ofChemistry and Chemical Engineering; Lanzhou University; 222 South TianshuiRoad 730000 Lanzhou P. R. China
| | - Shubin Liu
- Research Computing Center; University of North Carolina; Chapel Hill, NC 27599 USA
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4
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Xu H, Cheng J, Li Q, Li W. Some measures for making a traditional halogen bond be chlorine-shared or ion-pair one in FCl•NH3 complex. Mol Phys 2016. [DOI: 10.1080/00268976.2016.1255798] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Affiliation(s)
- Huili Xu
- The Laboratory of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering, Yantai University, Yantai, People's Republic of China
| | - Jianbo Cheng
- The Laboratory of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering, Yantai University, Yantai, People's Republic of China
| | - Qingzhong Li
- The Laboratory of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering, Yantai University, Yantai, People's Republic of China
| | - Wenzuo Li
- The Laboratory of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering, Yantai University, Yantai, People's Republic of China
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5
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Abstract
The σ-hole and π-hole are the regions with positive surface electrostatic potential on the molecule entity; the former specifically refers to the positive region of a molecular entity along extension of the Y-Ge/P/Se/X covalent σ-bond (Y = electron-rich group; Ge/P/Se/X = Groups IV-VII), while the latter refers to the positive region in the direction perpendicular to the σ-framework of the molecular entity. The directional noncovalent interactions between the σ-hole or π-hole and the negative or electron-rich sites are named σ-hole bond or π-hole bond, respectively. The contributions from electrostatic, charge transfer, and other terms or Coulombic interaction to the σ-hole bond and π-hole bond were reviewed first followed by a brief discussion on the interplay between the σ-hole bond and the π-hole bond as well as application of the two types of noncovalent interactions in the field of anion recognition. It is expected that this review could stimulate further development of the σ-hole bond and π-hole bond in theoretical exploration and practical application in the future.
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Affiliation(s)
- Hui Wang
- College of Chemistry, Beijing Normal University , Beijing 100875, People's Republic of China
| | - Weizhou Wang
- College of Chemistry and Chemical Engineering, Luoyang Normal University , Luoyang 471022, People's Republic of China
| | - Wei Jun Jin
- College of Chemistry, Beijing Normal University , Beijing 100875, People's Republic of China
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6
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Affiliation(s)
- Marta Marín-Luna
- Instituto de Química Médica (CSIC), C/Juan de la Cierva, 3, 28006-Madrid, Spain
| | - Ibon Alkorta
- Instituto de Química Médica (CSIC), C/Juan de la Cierva, 3, 28006-Madrid, Spain
| | - José Elguero
- Instituto de Química Médica (CSIC), C/Juan de la Cierva, 3, 28006-Madrid, Spain
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7
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Yang X, Yan CX, Zhou DG, Yang F, Zhou PP. Cooperative halogen bonds in V-shaped H3N·X1X2·X3Y (X1, X2, X3 = Cl and Br; Y = F, Cl and Br) complexes. RSC Adv 2016. [DOI: 10.1039/c6ra21018j] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
The dihalogen molecule can simultaneously interact with NH3 and another dihalogen molecule, forming a V-shaped trimer via cooperative halogen bonds.
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Affiliation(s)
- Xing Yang
- Key Laboratory of Nonferrous Metal Chemistry and Resources Utilization of Gansu Province
- State Key Laboratory of Applied Organic Chemistry
- College of Chemistry and Chemical Engineering
- Lanzhou University
- Lanzhou
| | - Chao-Xian Yan
- Key Laboratory of Nonferrous Metal Chemistry and Resources Utilization of Gansu Province
- State Key Laboratory of Applied Organic Chemistry
- College of Chemistry and Chemical Engineering
- Lanzhou University
- Lanzhou
| | - Da-Gang Zhou
- Key Laboratory of Nonferrous Metal Chemistry and Resources Utilization of Gansu Province
- State Key Laboratory of Applied Organic Chemistry
- College of Chemistry and Chemical Engineering
- Lanzhou University
- Lanzhou
| | - Fan Yang
- Key Laboratory of Nonferrous Metal Chemistry and Resources Utilization of Gansu Province
- State Key Laboratory of Applied Organic Chemistry
- College of Chemistry and Chemical Engineering
- Lanzhou University
- Lanzhou
| | - Pan-Pan Zhou
- Key Laboratory of Nonferrous Metal Chemistry and Resources Utilization of Gansu Province
- State Key Laboratory of Applied Organic Chemistry
- College of Chemistry and Chemical Engineering
- Lanzhou University
- Lanzhou
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8
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Masoodi HR, Bagheri S. The influence of carbon hybridization on coupling constants across C X⋯Cl F dihalogen bond: A computational study. Chem Phys Lett 2015. [DOI: 10.1016/j.cplett.2015.08.016] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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9
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Gilday LC, Robinson SW, Barendt TA, Langton MJ, Mullaney BR, Beer PD. Halogen Bonding in Supramolecular Chemistry. Chem Rev 2015; 115:7118-95. [DOI: 10.1021/cr500674c] [Citation(s) in RCA: 913] [Impact Index Per Article: 101.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Lydia C. Gilday
- Chemistry Research Laboratory,
Department of Chemistry, University of Oxford, Mansfield Road, Oxford OX1 3TA, United Kingdom
| | - Sean W. Robinson
- Chemistry Research Laboratory,
Department of Chemistry, University of Oxford, Mansfield Road, Oxford OX1 3TA, United Kingdom
| | - Timothy A. Barendt
- Chemistry Research Laboratory,
Department of Chemistry, University of Oxford, Mansfield Road, Oxford OX1 3TA, United Kingdom
| | - Matthew J. Langton
- Chemistry Research Laboratory,
Department of Chemistry, University of Oxford, Mansfield Road, Oxford OX1 3TA, United Kingdom
| | - Benjamin R. Mullaney
- Chemistry Research Laboratory,
Department of Chemistry, University of Oxford, Mansfield Road, Oxford OX1 3TA, United Kingdom
| | - Paul D. Beer
- Chemistry Research Laboratory,
Department of Chemistry, University of Oxford, Mansfield Road, Oxford OX1 3TA, United Kingdom
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An ab initio study on chalcogen–chalcogen bond interactions in cyclic (SHX)3 complexes (X=F, Cl, CN, NC, CCH, OH, OCH3, NH2). Chem Phys Lett 2015. [DOI: 10.1016/j.cplett.2015.04.013] [Citation(s) in RCA: 51] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
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11
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Alkorta I, Elguero J, Mó O, Yáñez M, Del Bene JE. Using beryllium bonds to change halogen bonds from traditional to chlorine-shared to ion-pair bonds. Phys Chem Chem Phys 2015; 17:2259-67. [DOI: 10.1039/c4cp04574b] [Citation(s) in RCA: 45] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Dramatic synergistic cooperative effects between Be⋯F beryllium bonds and Cl⋯N halogen bonds in XYBe:FCl:N-base ternary complexes lead to changes in the halogen-bond type from traditional to chlorine-shared to ion-pair bonds.
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Affiliation(s)
- Ibon Alkorta
- Instituto de Química Médica (IQM-CSIC)
- 28006-Madrid
- Spain
| | - José Elguero
- Instituto de Química Médica (IQM-CSIC)
- 28006-Madrid
- Spain
| | - Otilia Mó
- Departamento de Química
- 28049 Madrid
- Spain
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12
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Esrafili MD, Esmailpour P, Mohammadian-Sabet F, Solimannejad M. Theoretical study of the interplay between halogen bond and lithium–π interactions: Cooperative and diminutive effects. Chem Phys Lett 2013. [DOI: 10.1016/j.cplett.2013.10.009] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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13
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Revealing substitution effects on the strength and nature of halogen-hydride interactions: a theoretical study. J Mol Model 2013; 19:3767-77. [DOI: 10.1007/s00894-013-1912-y] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2013] [Accepted: 06/05/2013] [Indexed: 11/26/2022]
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14
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Hill JG, Hu X. Theoretical insights into the nature of halogen bonding in prereactive complexes. Chemistry 2013; 19:3620-8. [PMID: 23417990 PMCID: PMC3790957 DOI: 10.1002/chem.201204312] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2012] [Indexed: 11/26/2022]
Abstract
Benchmark quality geometries and interaction energies for the prereactive halogen-bonded complexes of dihalogens and ammonia, including hypothetical astatine containing dihalogens, have been produced via explicitly correlated coupled cluster methods. The application of local electron correlation partitioning reveals dispersion, electrostatics and ionic substitutions all contribute significantly to the interaction energy, with a linear relationship between the ionic substitutions and the degree of charge transfer. Potential energy curves for H3 N⋅⋅⋅ClF show that as the relative orientations of the two subunits are manipulated appreciable interactions can be found at considerably angular displaced geometries, signifying lower directionality in halogen bonding than previously supposed.
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Affiliation(s)
- J Grant Hill
- School of Chemistry, Joseph Black Building, University of Glasgow, Glasgow G12 8QQ, UK.
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15
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Esrafili MD, Mohammadirad N. Insights into the strength and nature of carbene···halogen bond interactions: a theoretical perspective. J Mol Model 2013; 19:2559-66. [PMID: 23455928 DOI: 10.1007/s00894-013-1804-1] [Citation(s) in RCA: 55] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2013] [Accepted: 02/11/2013] [Indexed: 11/25/2022]
Abstract
Halogen-bonding, a noncovalent interaction between a halogen atom X in one molecule and a negative site in another, plays critical roles in fields as diverse as molecular biology, drug design and material engineering. In this work, we have examined the strength and origin of halogen bonds between carbene CH₂ and XCCY molecules, where X = Cl, Br, I, and Y = H, F, COF, COOH, CF₃, NO₂, CN, NH₂, CH₃, OH. These calculations have been carried out using M06-2X, MP2 and CCSD(T) methods, through analyses of surface electrostatic potentials V S(r) and intermolecular interaction energies. Not surprisingly, the strength of the halogen bonds in the CH₂···XCCY complexes depend on the polarizability of the halogen X and the electron-withdrawing power of the Y group. It is revealed that for a given carbene···X interaction, the electrostatic term is slightly larger (i.e., more negative) than the dispersion term. Comparing the data for the chlorine, bromine and iodine substituted CH₂···XCCY systems, it can be seen that both the polarization and dispersion components of the interaction energy increase with increasing halogen size. One can see that increasing the size and positive nature of a halogen's σ-hole markedly enhances the electrostatic contribution of the halogen-bonding interaction.
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Affiliation(s)
- Mehdi D Esrafili
- Laboratory of Theoretical Chemistry, Department of Chemistry, University of Maragheh, PO Box: 5513864596, Maragheh, Iran.
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16
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Tsuzuki S, Uchimaru T, Wakisaka A, Ono T, Sonoda T. CCSD(T) level interaction energy for halogen bond between pyridine and substituted iodobenzenes: origin and additivity of substituent effects. Phys Chem Chem Phys 2013; 15:6088-96. [DOI: 10.1039/c3cp43693d] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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