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Korabel'nikov DV, Zhuravlev YN. Semi-empirical and ab initio calculations for crystals under pressure at fixed temperatures: the case of guanidinium perchlorate. RSC Adv 2020; 10:42204-42211. [PMID: 35516730 PMCID: PMC9057916 DOI: 10.1039/d0ra08588j] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2020] [Accepted: 11/13/2020] [Indexed: 01/05/2023] Open
Abstract
A simple semi-empirical approach is proposed to calculate structure and properties of crystals under pressure at fixed temperatures. The computed semi-empirical pressure dependencies for guanidinium perchlorate are in good agreement with available experimental data. Ab initio results within quasi-harmonic approximation for guanidinium perchlorate are also presented.
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Affiliation(s)
- Dmitry V Korabel'nikov
- Institute of Fundamental Sciences, Kemerovo State University Krasnaya 6 650043 Kemerovo Russia
| | - Yuriy N Zhuravlev
- Institute of Fundamental Sciences, Kemerovo State University Krasnaya 6 650043 Kemerovo Russia
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2
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Dai Y, Qi Y. Pressure-induced phase transition of 4-aminobenzonitrile: the formation and enhancement of N–H⋯N weak hydrogen bonds. RSC Adv 2018; 8:4588-4594. [PMID: 35539561 PMCID: PMC9077820 DOI: 10.1039/c8ra00020d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2018] [Accepted: 01/18/2018] [Indexed: 12/02/2022] Open
Abstract
A reversible pressure-induced structural phase transition of 4-aminobenzonitrile was found at about 0.3 GPa by conducting in situ high-pressure synchrotron angle-dispersive X-ray diffraction (ADXRD) experiments. The discontinuous changes of Raman modes at 0.2 GPa confirmed the occurrence of phase transition. In situ high-pressure Raman spectra indicated that the molecular arrangement and intermolecular interactions changed abruptly. The process of this phase transition continued up to about 1.0 GPa. When the pressure reached 1.1 GPa, the initial N–H⋯N interaction transformed into a new weak hydrogen bond, which was enhanced by further compression. The ab initio calculations and Hirshfeld surfaces were used to illustrate the above views. This study gives an example that demonstrates that the pressure can induce the formation of hydrogen bonds, which contributes to the development of supramolecular chemistry. The initial N–H⋯N interactions in 4-aminobenzonitrile crystals are enhanced and changed into weak hydrogen bonds by high pressure.![]()
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Affiliation(s)
- Yuxiang Dai
- Institute of Materials Physics and Chemistry
- School of Materials Science and Engineering
- Northeastern University
- Shenyang 110819
- China
| | - Yang Qi
- Institute of Materials Physics and Chemistry
- School of Materials Science and Engineering
- Northeastern University
- Shenyang 110819
- China
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Liu B, Shi J, Wang M, Zhang J, Sun B, Shen Y, Sun X. Reduction in interfacial tension of water–oil interface by supercritical CO2 in enhanced oil recovery processes studied with molecular dynamics simulation. J Supercrit Fluids 2016. [DOI: 10.1016/j.supflu.2015.11.001] [Citation(s) in RCA: 43] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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4
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Park C, Popov D, Ikuta D, Lin C, Kenney-Benson C, Rod E, Bommannavar A, Shen G. New developments in micro-X-ray diffraction and X-ray absorption spectroscopy for high-pressure research at 16-BM-D at the Advanced Photon Source. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2015; 86:072205. [PMID: 26233345 DOI: 10.1063/1.4926893] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/22/2015] [Accepted: 05/03/2015] [Indexed: 06/04/2023]
Abstract
The monochromator and focusing mirrors of the 16-BM-D beamline, which is dedicated to high-pressure research with micro-X-ray diffraction (micro-XRD) and X-ray absorption near edge structure (XANES) (6-45 keV) spectroscopy, have been recently upgraded. Monochromatic X-rays are selected by a Si (111) double-crystal monochromator operated in an artificial channel-cut mode and focused to 5 μm × 5 μm (FWHM) by table-top Kirkpatrick-Baez type mirrors located near the sample stage. The typical X-ray flux is ∼5 × 10(8) photons/s at 30 keV. The instrumental resolution, Δq/qmax, reaches to 2 × 10(-3) and is tunable through adjustments of the detector distance and X-ray energy. The setup is stable and reproducible, which allows versatile application to various types of experiments including resistive heating and cryogenic cooling as well as ambient temperature compression. Transmission XANES is readily combined with micro-XRD utilizing the fixed-exit feature of the monochromator, which allows combined XRD-XANES measurements at a given sample condition.
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Affiliation(s)
- Changyong Park
- High Pressure Collaborative Access Team, Geophysical Laboratory, Carnegie Institution of Washington, Argonne, Illinois 60439, USA
| | - Dmitry Popov
- High Pressure Collaborative Access Team, Geophysical Laboratory, Carnegie Institution of Washington, Argonne, Illinois 60439, USA
| | - Daijo Ikuta
- High Pressure Collaborative Access Team, Geophysical Laboratory, Carnegie Institution of Washington, Argonne, Illinois 60439, USA
| | - Chuanlong Lin
- High Pressure Collaborative Access Team, Geophysical Laboratory, Carnegie Institution of Washington, Argonne, Illinois 60439, USA
| | - Curtis Kenney-Benson
- High Pressure Collaborative Access Team, Geophysical Laboratory, Carnegie Institution of Washington, Argonne, Illinois 60439, USA
| | - Eric Rod
- High Pressure Collaborative Access Team, Geophysical Laboratory, Carnegie Institution of Washington, Argonne, Illinois 60439, USA
| | - Arunkumar Bommannavar
- High Pressure Collaborative Access Team, Geophysical Laboratory, Carnegie Institution of Washington, Argonne, Illinois 60439, USA
| | - Guoyin Shen
- High Pressure Collaborative Access Team, Geophysical Laboratory, Carnegie Institution of Washington, Argonne, Illinois 60439, USA
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6
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Szafrański M. Effect of high pressure on the supramolecular structures of guanidinium based ferroelectrics. CrystEngComm 2014. [DOI: 10.1039/c4ce00697f] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
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7
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Drozd M, Dudzic D. Guanidinium perchlorate ferroelectric crystal. Study of vibrational properties based on experimental measurements and theoretical calculations. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2013; 115:345-356. [PMID: 23851177 DOI: 10.1016/j.saa.2013.06.023] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/29/2013] [Revised: 05/31/2013] [Accepted: 06/05/2013] [Indexed: 06/02/2023]
Abstract
The infrared and Raman spectra of guanidinium perchlorate were measured at room temperature. The spectra are discussed with the framework of literature X-ray structure in relation to internal hydrogen bond network. For complete vibrational analysis the theoretical calculation of both infrared and Raman spectra in DFT approach were performed. The clear-cut assignment of observed bands was made on the basis of PED analysis. On the basis of theoretical studies the electrostatic charges and energies of HOMO and LUMO orbitals were obtained. Additionally the first order hyperpolarizability of investigated molecule was calculated. The obtained results are in good agreement with literature data, but according to performed calculation the specific damping of β hyperpolarizability in unit cell (comparable with isolated molecule) is observed. To explain in detail phase transitions phenomena (at ca. 452 and 454K) described in literature the temperature dependent infrared powder spectra were recorded. The temperature dependencies of bands position and intensities for titled crystal in the range 11-480K are analyzed.
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Affiliation(s)
- M Drozd
- Institute of Low Temperatures and Structures Research Polish Academy of Sciences, Okólna 2 Str., 50-422 Wrocław, Poland.
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Li Q, Li S, Wang K, Li X, Liu J, Liu B, Zou G, Zou B. Pressure-induced isosymmetric phase transition in sulfamic acid: A combined Raman and x-ray diffraction study. J Chem Phys 2013; 138:214505. [DOI: 10.1063/1.4807864] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023] Open
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9
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Li Q, Li S, Wang K, Li W, Liu J, Liu B, Zou G, Zou B. Compression studies of face-to-face π-stacking interaction in sodium squarate salts: Na2C4O4 and Na2C4O4●3H2O. J Chem Phys 2013; 137:184905. [PMID: 23163392 DOI: 10.1063/1.4767057] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023] Open
Abstract
High-pressure Raman scattering and synchrotron X-ray diffraction measurements of sodium squarate (Na(2)C(4)O(4), SS) are performed in a diamond anvil cell. SS possesses a rare, but typical structure, which can show the effect of face-to-face π-stacking without interference of other interactions. At ~11 GPa, it undergoes a phase transition, identified as a symmetry transformation from P2(1)/c to P2(1). From high-pressure Raman patterns and the calculated model of SS, it can be proved that the phase transition results from the distorted squarate rings. We infer it is the enhancement of π-stacking that dominates the distortion. For comparison, high-pressure Raman spectra of sodium squarate trihydrate (Na(2)C(4)O(4)●3H(2)O, SST) are also investigated. The structure of SST is determined by both face-to-face π-stacking and hydrogen bonding. SST can be regarded as a deformation of SS. A phase transition, with the similar mechanism as SS, is observed at ~10.3 GPa. Our results can be well supported by the previous high-pressure studies of ammonium squarate ((NH(4))(2)C(4)O(4), AS), and vice versa. High-pressure behaviors of the noncovalent interactions in SS, SST, and AS are compared to show the impacts of hydrogen bonding and the role of electrostatic interaction in releasing process.
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Affiliation(s)
- Qian Li
- State Key Laboratory of Superhard Materials, Jilin University, Changchun 130012, China
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10
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Huang H, Zhu X, Su L, Wang H, Yang Y. Effect of temperature on self-assembly/disassembly transition of dialkylurea supramolecular gels at high pressure. RSC Adv 2013. [DOI: 10.1039/c3ra41540f] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022] Open
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11
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Tan X, Wang K, Li S, Yuan H, Yan T, Liu J, Yang K, Liu B, Zou G, Zou B. Exploration of the Pyrazinamide Polymorphism at High Pressure. J Phys Chem B 2012; 116:14441-50. [DOI: 10.1021/jp3039219] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Xiao Tan
- State Key Laboratory of Superhard
Materials, Jilin University, Changchun
130012, China
| | - Kai Wang
- State Key Laboratory of Superhard
Materials, Jilin University, Changchun
130012, China
| | - Shourui Li
- State Key Laboratory of Superhard
Materials, Jilin University, Changchun
130012, China
| | - Hongsheng Yuan
- State Key Laboratory of Superhard
Materials, Jilin University, Changchun
130012, China
| | - Tingting Yan
- State Key Laboratory of Superhard
Materials, Jilin University, Changchun
130012, China
| | - Jing Liu
- Beijing Synchrotron
Radiation
Laboratory, Institute of High Energy Physics, Chinese Academy of Sciences, Beijing 100039, China
| | - Ke Yang
- Shanghai Synchrotron Radiation
Facilities, Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai 201204, China
| | - Bingbing Liu
- State Key Laboratory of Superhard
Materials, Jilin University, Changchun
130012, China
| | - Guangtian Zou
- State Key Laboratory of Superhard
Materials, Jilin University, Changchun
130012, China
| | - Bo Zou
- State Key Laboratory of Superhard
Materials, Jilin University, Changchun
130012, China
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Yan T, Li S, Wang K, Tan X, Jiang Z, Yang K, Liu B, Zou G, Zou B. Pressure-induced phase transition in N-H···O hydrogen-bonded molecular crystal oxamide. J Phys Chem B 2012; 116:9796-802. [PMID: 22816990 DOI: 10.1021/jp302575k] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Abstract
The effect of high pressure on the structural stability of oxamide has been investigated in a diamond anvil cell by Raman spectroscopy up to ∼14.6 GPa and by angle-dispersive X-ray diffraction (ADXRD) up to ∼17.5 GPa. The discontinuity in Raman shifts around 9.6 GPa indicates a pressure-induced structural phase transition. This phase transition is confirmed by the change of ADXRD spectra with the symmetry transformation from P1 to P1. On total release of pressure, the diffraction pattern returns to its initial state, implying this transition is reversible. We discuss the pressure-induced variations in N-H stretching vibrations and the amide modes in Raman spectra and propose that this phase transition is attributed to the distortions of the hydrogen-bonded networks.
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Affiliation(s)
- Tingting Yan
- State Key Laboratory of Superhard Materials, Jilin University, Changchun 130012, China
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13
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Li S, Li Q, Zhou J, Wang R, Jiang Z, Wang K, Xu D, Liu J, Liu B, Zou G, Zou B. Effect of high pressure on the typical supramolecular structure of guanidinium methanesulfonate. J Phys Chem B 2012; 116:3092-8. [PMID: 22339666 DOI: 10.1021/jp212349h] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Abstract
We report the high-pressure response of guanidinium methanesulfonate (C(NH(2))(3)(+)·CH(3)SO(3)(-), GMS) using in situ Raman spectroscopy and synchrotron X-ray diffraction (XRD) techniques up to the pressures of ~11 GPa. GMS exhibits the representative supramolecular structure of two-dimensional (2D) hydrogen-bonded bilayered motifs under ambient conditions. On the basis of the experimental results, two phase transitions were identified at 0.6 and 1.5 GPa, respectively. The first phase transition, which shows the reconstructive feature, is ascribed to the rearrangements of hydrogen-bonded networks, resulting in the symmetry transformation from C2/m to Pnma. The second one proves to be associated with local distortions of methyl groups, accompanied by the symmetry transformation from Pnma to Pna2(1). The cooperativity of hydrogen bonding, electrostatic, and van der Waals interactions, as well as mechanisms for the phase transitions is discussed by means of the local nature of the structure.
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Affiliation(s)
- Shourui Li
- State Key Laboratory of Superhard Materials, Jilin University, Changchun 130012, China
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