Assignment of the photoelectron spectra of FeS3(-) by density functional theory, CASPT2, and RCCSD(T) calculations

Cation binding of Li(I), Na(I) and Zn(II) to cobalt and iron sulphide clusters - electronic structure study

The binding of alkaline (Li⁺ and Na⁺) and zinc (Zn²⁺) cations to mononuclear disulphides MS₂ and to persulphides, containing an S-S bond, M(S₂), to binuclear disulphides M₂S₂ and persulphides M₂(S₂) and to cubic tetranuclear sulphides M₄S₄ where M = Fe, Co, is examined by density functional theory with the B3LYP functional, and dispersion corrections were applied. For the small-sized clusters (up to two transition metal centres), the energy gaps between different configurations were verified by CCSD(T) calculations. Persulphides M(S₂) are more stable than disulphides MS₂ as bare clusters, upon carbonyl and chloride ligand coordination and upon cation binding (Li⁺, Na⁺, Zn²⁺). The one-electron reduction of alkali cations and two-electron reduction of Zn²⁺ reverses order of stability and the planar disulphides (MS₂-reduced cation) become more stable; the energy gap disulphide to persulphide increases. In all reduced clusters, zinc ions form bonds with sulphur and with the transition metal centre (Co or Fe). Lithium cations also form bonds to cobalt or iron, but only in the M₂S₂ clusters, upon reduction. Energy barriers were calculated for the disulphide to persulphide reaction in the Zn-Co-S₂ system in the isolated clusters (gas-phase), in water, acetonitrile and 1-Cl-hexane solution. Most significant decrease in the energy barriers were obtained with less-polar solvents, acetonitrile, and particularly, 1-Cl-hexane. In M₄S₄ clusters, the cations do not reach optimal coordination to the sulphur centres. The global minima of M₂S₂ clusters are antiferromagnetic; in the reduced Zn-M₂S₂ clusters, magnetic moment is induced at zinc centres as a result of charge transfer between Zn and Co or Zn and Fe.

Ground and Low-Lying Excited States of NbC3-/0 Clusters: Assignment of the Anion Photoelectron Spectra from Multiconfigurational Calculations

The BP86 DFT, CCSD(T), and CASPT2 methods were employed to study the low-lying states of NbC₃^-/0 clusters. The anionic and neutral ground states were determined to be the ¹A₁ and 1²A₁ of the cyclic-NbC₃^-/0 isomers. All bands in the photoelectron spectra of the NbC₃^- cluster were interpreted based on electron detachment processes from the ¹A₁ of the cyclic-NbC₃^- isomer. The X, A, B, and C bands in the spectra are, respectively, ascribed to the transitions from ¹A₁ to the 1²A₁, ²B₁, 2²A₁, and ²B₂ states. The wave function of the initial ¹A₁ anionic state exhibits a pronounced multireference character that plays to some extent a role in the ¹A₁ → 1²A₁ and the ¹A₁ → 2²A₁ ionizations. Only the ¹A₁ → ²B₂ transition appears as a clear one-electron detachment process. The Franck-Condon factor simulations for the ¹A₁ → 1²A₁ and ¹A₁ → ²B₁ transitions are consistent with the observed vibrational progressions of the X and A bands in the spectra.

Molecular Dynamics Simulations of the [2Fe-2S] Cluster-Binding Domain of NEET Proteins Reveal Key Molecular Determinants That Induce Their Cluster Transfer/Release

The NEET proteins are a novel family of iron-sulfur proteins characterized by an unusual three cysteine and one histidine coordinated [2Fe-2S] cluster. Aberrant cluster release, facilitated by the breakage of the Fe-N bond, is implicated in a variety of human diseases, including cancer. Here, the molecular dynamics in the multi-microsecond timescale, along with quantum chemical calculations, on two representative members of the family (the human NAF-1 and mitoNEET proteins), show that the loss of the cluster is associated with a dramatic decrease in secondary and tertiary structure. In addition, the calculations provide a mechanism for cluster release and clarify, for the first time, crucial differences existing between the two proteins, which are reflected in the experimentally observed difference in the pH-dependent cluster reactivity. The reliability of our conclusions is established by an extensive comparison with the NMR data of the solution proteins, in part measured in this work.

Computational Investigation of the Geometrical and Electronic Structures of VGen-/0 (n = 1-4) Clusters by Density Functional Theory and Multiconfigurational CASSCF/CASPT2 Method

Density functional theory and the multiconfigurational CASSCF/CASPT2 method have been employed to study the low-lying states of VGe_n^-/0 (n = 1-4) clusters. For VGe^-/0 and VGe₂^-/0 clusters, the relative energies and geometrical structures of the low-lying states are reported at the CASSCF/CASPT2 level. For the VGe₃^-/0 and VGe₄^-/0 clusters, the computational results show that due to the large contribution of the Hartree-Fock exact exchange, the hybrid B3LYP, B3PW91, and PBE0 functionals overestimate the energies of the high-spin states as compared to the pure GGA BP86 and PBE functionals and the CASPT2 method. On the basis of the pure GGA BP86 and PBE functionals and the CASSCF/CASPT2 results, the ground states of anionic and neutral clusters are defined, the relative energies of the excited states are computed, and the electron detachment energies of the anionic clusters are evaluated. The computational results are employed to give new assignments for all features in the photoelectron spectra of VGe₃^- and VGe₄^- clusters.

Electronic, magnetic structure and water splitting reactivity of the iron-sulfur dimers and their hexacarbonyl complexes: A density functional study

The iron sulfide dimers (FeS)2 and their persulfide isomers with S-S bonds are studied with the B3LYP density functional as bare clusters and as hexacarbonyls. The disulfides are more stable than the persulfides as bare clusters and the persulfide ground state lies at 3.2 eV above the global minimum, while in the hexacarbonyl complexes this order is reversed: persulfides are more stable, but the energy gap between disulfides and persulfides becomes much smaller and the activation barrier for the transition persulfide → disulfide is 1.11 eV. Carbonylation also favors a non-planar Fe2S2 ring for both the disulfides and the persulfides and high electron density in the Fe2S2 core is induced. The diamagnetic ordering is preferred in the hexacarbonyls, unlike the bare clusters. The hexacarbonyls possess low-lying triplet excited states. In the persulfide, the lowest singlet-to-triplet state excitation occurs by electron transition from the iron centers to an orbital located predominantly at S2 via metal-to-ligand charge transfer. In the disulfide this excitation corresponds to ligand-to-metal charge transfer from the sulfur atoms to an orbital located at the iron centers and the Fe-Fe bond. Water splitting occurs on the hexacarbonyls, but not on the bare clusters. The singlet and triplet state reaction paths were examined and activation barriers were determined: 50 kJ mol(-1) for HO-H bond dissociation and 210 kJ mol(-1) for hydrogen evolution from the intermediate sulfoxyl-hydroxyl complexes Fe2S(OH)(SH)(CO)6 formed. The lowest singlet-singlet excitations in the hexacarbonyls, the water adsorption complexes and in the reaction intermediates, formed prior to dihydrogen release, fall in the visible light region. The energy barrier of 210 kJ mol(-1) for the release of one hydrogen molecule corresponds to one visible photon of 570 nm. The dissociation of a second water molecule, followed by H2 and O2 release via hydro-peroxide intermediate is a two-step process, with activation barriers of 218 and 233 kJ mol(-1), which also fall in the visible light region. A comparison of the full reaction path with that on diiron dioxide hexacarbonyls Fe2O2(CO)6 is traced.