Disproportionation of bromous acid HOBrO by direct O-transfer and via anhydrides O(BrO)2 and BrO-BrO2. An ab initio study of the mechanism of a key step of the Belousov-Zhabotinsky oscillating reaction

Computational Insights into the Catalysis of the pH Dependence of Bromite Decomposition Catalyzed by Chlorite Dismutase from Dechloromonas aromatica (DaCld)

The heme-containing chlorite dismutases catalyze the rapid and efficient decomposition of chlorite (ClO2-) to yield Cl- and O2, and the catalytic efficiency of chlorite dismutase from Dechloromonas aromatica (DaCld) in catalyzing the decomposition of bromite (BrO2-) was dependent on pH, which was supposed to be caused by the conversion of active Cpd I to the inactive Cpd II by proton-coupled electron transfer (PCET) from the pocket Tyr118 to the propionate side chain of heme at high pH. However, the direct evidence of PCET and how the pH affects the efficiency of DaCld, as well as whether Cpd II is really inactive, are still poorly understood. Here, on the basis of the high-resolution crystal structures, the computational models in both acidic (pH 5.0) and alkaline (pH 9.0) environments were constructed, and a series of quantum mechanical/molecular mechanical calculations were performed. On the basis of our calculation results, the O-Br bond cleavage of BrO2- always follows the homolytic mode to generate Cpd II rather than Cpd I. It is different from the O-O cleavage of O2/H2O2 or peracetic acid catalyzed by the other heme-containing enzymes. Thus, in the subsequent O-O rebound reaction, it is the Fe(IV)═O in Cpd II that combines with the O-Br radical. Because the porphyrin ring in Cpd II does not bear an unpaired electron, the previously suggested PCET from Tyr118 to the propionate side chain of heme was not theoretically recognized in an alkaline environment. In addition, the O-O rebound step in an alkaline solution corresponds to an energy barrier that is larger than that in an acidic environment, which can well explain the pH dependence of the activity of DaCld. In addition, the protonation state of the propionic acid side chains of heme and the surrounding hydrogen bond networks were calculated to have a significant impact on the barriers of the O-O rebound step, which is mainly achieved by affecting the reactivity of the Fe(IV)═O group in Cpd II. In an acidic environment, the relatively weaker coordination of the O2 atom to Fe leads to its higher reactivity toward the O-O rebound reaction. These observations may provide useful information for understanding the catalysis of chlorite dismutases.

Origin of the Second-Order Proton Catalysis of Ferriin Reduction in Belousov-Zhabotinsky Reactions: Density Functional Studies of Ferroin and Ferriin Aggregates with Outer Sphere Ligands Sulfate, Bisulfate, and Sulfuric Acid

The detailed mechanisms of Belousov-Zhabotinsky oscillating reactions continue to present grand challenges, even after half a century of study. The origin of the pH dependence of the oscillation pattern had never been rigorously identified. In our recent kinetic study of one of the key Belousov-Zhabotinsky reactions, the iron-catalyzed bromate oxidation of malonic acid, compelling agreement between experiments and kinetic simulations was achieved only with the inclusion of second-order proton catalysis of the reduction of the [Fe(phen)₃]³⁺ species. After exhausting all other avenues in search of an explanation of this proton catalysis, we considered the possibility that the parent iron-phenanthroline complexes could aggregate with neutral and anionic outer sphere ligands (OSLs) in the highly concentrated sulfuric acid solution, and we hypothesized that OSL protonation would increase the capacity of the aggregated complex to oxidize the organic fuel. We performed potential energy surface analyses at the SMD(APFD/6-311G*) level of complexes of the types [Fe(phen)₃(SO₄^2-)_m(HSO₄^-)_n(H₂SO₄)_o]^(c-2m-n)+ for ferriin (c = 3) and ferroin (c = 2) aggregated with m sulfate, n bisulfate, and o sulfuric acid OSLs. We present structures of the OSL aggregates, develop a nomenclature for their description, and characterize their electronic structure. The structural chemistry provides the foundation to discuss the ferroin/ferriin redox couple with emphasis on the relationship between the vertical electron affinities of ferriin aggregates and their OSL protonation states. For proton catalysis to manifest itself, double-protonation paths that are slightly endergonic should be present, and proton affinities of aggregated OSLs allow the identification of such double-protonation chains. As a first test of our mechanistic proposal for the second-order proton catalysis of the Belousov-Zhabotinsky reaction, the results presented here provide compelling evidence in support of the importance of outer sphere ligation of the iron catalyst.

Amplification of weak magnetic field effects on oscillating reactions

We explore the possibility that chemical feedback and autocatalysis in oscillating chemical reactions could amplify weak magnetic field effects on the rate constant of one of the constituent reactions, assumed to proceed via a radical pair mechanism. Using the Brusselator model oscillator, we find that the amplitude of limit cycle oscillations in the concentrations of reaction intermediates can be extraordinarily sensitive to minute changes in the rate constant of the initiation step. The relevance of such amplification to biological effects of 50/60 Hz electromagnetic fields is discussed.

Video colorimetry of single-chromophore systems based on vector analysis in the 3D color space: Unexpected hysteresis loops in oscillating chemical reactions

Colorimetry, the quantitative determination of color, usually of a digital image, has useful applications in diverse areas of research. Many methods have been proposed for translating the RGB data of an image to obtain concentration information. Among the many methods for RGB analysis, we focus on the vector projection method (VP), which is based on a vector analysis in 3D RGB color space. This method has the major advantages of being conceptually intelligible and generalizable to various systems. For solutions with variable concentrations of one chromophore, we will show that the analysis of the trace in RGB color space allows for a judgment about the reliability of the linear concentration dependence of the chromapostasi parameter. We discuss the theoretical underpinnings of the method in two test cases, a simple dye solution and a titration of an organic acid with phenolphthalein indicator. The VP method was then applied to the Ce-catalyzed Belousov-Zhabotinsky reaction with the expectation that the colorimetry would quantify [Ce⁴⁺] oscillations. Surprisingly, the 3D color space analysis revealed hysteresis loops and the origin and implications of this observation are discussed.

Bromate Oxidation of Ammonium Salts: In Situ Acid Formation for Reservoir Stimulation

A redox chemistry approach has been employed to synthesize an assortment of acids in the subterranean environment for the purpose of enhancing productivity from hydrocarbon-bearing rock formations. Experimental studies revealed that bromate selectively oxidizes a series of ammonium salts NH₄X where X = F^-, Cl^-, Br^-, SO₄^2-, and CF₃CO₂^- to produce 5-17 wt % HX. Importantly, the in situ method allows strategic placement of the acid in the zone of interest where the fluid is heated, and the reaction is triggered. Ammonium counteranions are shown to influence the kinetics of the bromate-ammonium reaction, and the conditions are tailored to promote oxidation of ammonium at reservoir temperatures. The reaction is observed to be acid-catalyzed, where the formation of bromous acid (HBrO₂) is involved in the rate-limiting step. As a result, an induction period that scales with the p K_a of the acid being formed is followed by rapid formation of the reaction products.

Measurements and Simulations of the Acidity Dependence of the Kinetics of the Iron-Catalyzed Belousov-Zhabotinsky Reaction: Proton-Catalysis in the Electron Transfer Reaction Involving the [Fe(phen)3]3+ Species

The acidity dependence of the iron-catalyzed bromate-malonic acid Belousov-Zhabotinsky reaction was studied in the range 0.36 M < [H₂SO₄]₀ < 1.20 M, and the temporal evolutions of the oscillation patterns were analyzed. The experimental results show that the period times PT _i decrease exponentially with increasing acidity and that the period times parallel the decrease of the reduction times RT with increasing acidity. Simulations using the reactions of the commonly accepted core reaction mechanism failed to match the measurements even in a qualitative fashion. However, we found that compelling agreement between the experiments and the simulations can be achieved over the entire range with the inclusion of second-order proton-catalysis of the oxidation of bromomalonic acid (BrMA) by the [Fe(phen)₃]³⁺ species in the reaction identified in this paper as reaction 9 (R9), and this [H⁺] dependence is informative about the species involved in the outer sphere electron transfer reaction. The trication [Fe(phen)₃]³⁺ species is stabilized by ion pairing and solvation, and one may anticipate the presence of [Fe(phen)₃(HSO₄) _n(H₂O) _m]^{(3- n)+} species ( n = 0-3). Our results suggest that the removal of aggregating HSO₄^- ions by protonation creates a better oxidant and facilitates the approach of the reductant BrMA, and the second-order [H⁺] dependence further suggests that BrMA is primarily oxidized by a doubly charged [Fe(phen)₃(HSO₄)₁(L) _k]²⁺ species. Considering the complexity of the BZ system and the uncertainties in the many reaction rate constants, we were somewhat surprised to find this high level of agreement by (just) the replacement of R9 by R9'. In fact, the near-quantitative agreement presents a powerful corroboration of the core reaction mechanism of the BrMA-rich BZ reaction, and the replacement of R9 by R9' extends the validity of this core reaction mechanism to acidities above and below the typical acidity of BZ reactions ([H⁺] ≈ 1 M).

Electronic structures and spin density distributions of BrO2 and (HO)2BrO radicals. Mechanisms for avoidance of hypervalency and for spin delocalization and spin polarization

The results are reported of an ab initio study of bromine dioxide BrO2, 1, and of the T-shaped trans- and cis-dihydroxides 2 and 3 of dihydrogen bromate (HO)2BrO. The thermochemistry has been explored of potential synthetic routes to (HO)2BrO involving water addition to BrO2, hydroxyl addition to bromous acid HOBrO, 4, protonation/reduction of bromic acid HOBrO2, 5, via tautomers 6-8 of protonated bromic acid, and by reduction/protonation of bromic acid via radical anion [HOBrO2](-), 9. The potential energy surface analyses were performed at the MP2(full)/6-311G* level (or better) and with the consideration of aqueous solvation at the SMD(MP2(full)/6-311G*) level (or better), and higher-level energies were computed at levels up to QCISD(full,T)/6-311++G(2df,2pd)//MP2. The addition of RO radical to bromous acid or bromite esters and the reduction of protonated bromic acid or protonated bromate esters are promising leads for possible synthetic exploration. Spin density distributions and molecular electrostatic potentials were computed at the QCISD(full)/6-311G*//MP2(full)/6-311G* level to characterize the electronic structures of 1-3. Both radicals employ maximally occupied (pseudo) π-systems to transfer electron density from bromine to the periphery. While the formation of the (3c-5e) π-system suffices to avoid hypervalency in 1, the formation of the (4c-7e) π-system in 2 or 3 still leaves the bromine formally hypervalent and (HO)2BrO requires delocalization of bromine density into σ*-SMOs over the trans O-Br-O moiety. Molecular orbital theory is employed to describe the mechanisms for the avoidance of hypervalency and for spin delocalization and spin polarization. The (4c-7e) π-system in 2 is truly remarkable in that it contains five π-symmetric spin molecular orbitals (SMO) with unique shapes.