1
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Hassani M, Mallon CJ, Monzy JN, Schmitz AJ, Brewer SH, Fenlon EE, Tucker MJ. Inhibition of vibrational energy flow within an aromatic scaffold via heavy atom effect. J Chem Phys 2023; 158:224201. [PMID: 37309893 PMCID: PMC10275622 DOI: 10.1063/5.0153760] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2023] [Accepted: 05/25/2023] [Indexed: 06/14/2023] Open
Abstract
The regulation of intramolecular vibrational energy redistribution (IVR) to influence energy flow within molecular scaffolds provides a way to steer fundamental processes of chemistry, such as chemical reactivity in proteins and design of molecular diodes. Using two-dimensional infrared (2D IR) spectroscopy, changes in the intensity of vibrational cross-peaks are often used to evaluate different energy transfer pathways present in small molecules. Previous 2D IR studies of para-azidobenzonitrile (PAB) demonstrated that several possible energy pathways from the N3 to the cyano-vibrational reporters were modulated by Fermi resonance, followed by energy relaxation into the solvent [Schmitz et al., J. Phys. Chem. A 123, 10571 (2019)]. In this work, the mechanisms of IVR were hindered via the introduction of a heavy atom, selenium, into the molecular scaffold. This effectively eliminated the energy transfer pathway and resulted in the dissipation of the energy into the bath and direct dipole-dipole coupling between the two vibrational reporters. Several structural variations of the aforementioned molecular scaffold were employed to assess how each interrupted the energy transfer pathways, and the evolution of 2D IR cross-peaks was measured to assess the changes in the energy flow. By eliminating the energy transfer pathways through isolation of specific vibrational transitions, through-space vibrational coupling between an azido (N3) and a selenocyanato (SeCN) probe is facilitated and observed for the first time. Thus, the rectification of this molecular circuitry is accomplished through the inhibition of energy flow using heavy atoms to suppress the anharmonic coupling and, instead, favor a vibrational coupling pathway.
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Affiliation(s)
- Majid Hassani
- Department of Chemistry, University of Nevada, Reno, Nevada 89557, USA
| | | | - Judith N. Monzy
- Department of Chemistry, Franklin & Marshall College, Lancaster, Pennsylvania 17604-3003, USA
| | - Andrew J. Schmitz
- Department of Chemistry, University of Nevada, Reno, Nevada 89557, USA
| | - Scott H. Brewer
- Department of Chemistry, Franklin & Marshall College, Lancaster, Pennsylvania 17604-3003, USA
| | - Edward E. Fenlon
- Department of Chemistry, Franklin & Marshall College, Lancaster, Pennsylvania 17604-3003, USA
| | - Matthew J. Tucker
- Department of Chemistry, University of Nevada, Reno, Nevada 89557, USA
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2
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Sakpal SS, Deshmukh SH, Chatterjee S, Ghosh D, Bagchi S. Transition of a Deep Eutectic Solution to Aqueous Solution: A Dynamical Perspective of the Dissolved Solute. J Phys Chem Lett 2021; 12:8784-8789. [PMID: 34491763 DOI: 10.1021/acs.jpclett.1c02118] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Disruption of the deep eutectic solvent (DES) nanostructure around the dissolved solute upon addition of water is investigated by polarization-selective two-dimensional infrared spectroscopy and molecular dynamics simulations. The heterogeneous DES nanostructure around the solute is partially retained up to 41 wt % of added water, although water molecules are gradually incorporated in the solute's solvation shell even at lower hydration levels. Beyond 41 wt %, the solute is observed to be preferentially solvated by water. This composition denotes the upper hydration limit of the deep eutectic solvent above which the solute senses an aqueous solvation environment. Interestingly, our results indicate that the transition from a deep eutectic solvation environment to an aqueous one around the dissolved solute can happen at a hydration level lower than that reported for the "water in DES" to "DES in water" transition.
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Affiliation(s)
- Sushil S Sakpal
- Physical and Materials Chemistry Division, National Chemical Laboratory (CSIR-NCL), Dr.Homi Bhabha Road, Pune 411008, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Samadhan H Deshmukh
- Physical and Materials Chemistry Division, National Chemical Laboratory (CSIR-NCL), Dr.Homi Bhabha Road, Pune 411008, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Srijan Chatterjee
- Physical and Materials Chemistry Division, National Chemical Laboratory (CSIR-NCL), Dr.Homi Bhabha Road, Pune 411008, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Deborin Ghosh
- Physical and Materials Chemistry Division, National Chemical Laboratory (CSIR-NCL), Dr.Homi Bhabha Road, Pune 411008, India
| | - Sayan Bagchi
- Physical and Materials Chemistry Division, National Chemical Laboratory (CSIR-NCL), Dr.Homi Bhabha Road, Pune 411008, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
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3
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Fernández-Terán R, Hamm P. A closer look into the distance dependence of vibrational energy transfer on surfaces using 2D IR spectroscopy. J Chem Phys 2020; 153:154706. [PMID: 33092354 DOI: 10.1063/5.0025787] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Vibrational energy transfer (VET) between two isotopologues of [Re(dcb)(CO)3Br] immobilized on a TiO2 surface is studied with the help of 2D IR spectroscopy in dependence of surface coverage. To dilute the molecules on the surface, and thereby control the intermolecular distances, two different diluents have been used: a third isotopologue of the same molecule and 4-cyanobenzoic acid. As expected, the VET rate decreases with dilution. For a quantitative investigation of the distance dependence of the VET rate, we analyze the data based on an excitonic model. This model reveals the typical 1/r6-distance dependence for a dimer of a donor and acceptor, similar to the nuclear Overhauser effect in NMR spectroscopy or Förster resonant energy transfer in electronic spectroscopy. However, VET becomes a collective phenomenon on the surface, with the existence of a network of coupled molecules and its disappearance below a percolation threshold, dominating the concentration dependence of the VET rate.
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Affiliation(s)
| | - Peter Hamm
- Department of Chemistry, University of Zurich, Winterthurerstrasse 190, Zurich, Switzerland
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4
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Zhou D, Hao H, Ma Y, Zhong H, Dai Y, Cai K, Mukherjee S, Liu J, Bian H. Specific Host-Guest Interactions in the Crown Ether Complexes with K + and NH 4+ Revealed from the Vibrational Relaxation Dynamics of the Counteranion. J Phys Chem B 2020; 124:9154-9162. [PMID: 32965118 DOI: 10.1021/acs.jpcb.0c07032] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The specific host-guest interactions in the corresponding complexes of K+ and NH4+ with typical crown ethers were investigated by using FTIR and ultrafast IR spectroscopies. The counteranions, i.e., SCN-, were employed as a local vibrational probe to report the structural dynamics of the complexation. It was found that the vibrational relaxation dynamics of the SCN- was strongly affected by the cations confined in the cavities of the crown ethers. The time constant of the vibrational population decay of SCN- in the complex of NH4+ with the 18-crown-6 was determined to be 6 ± 2 ps, which is ∼30 times faster than that in the complex of K+ with the crown ethers. Control experiments showed that the vibrational population decay of SCN- depended on the size of the cavities of the crown ethers. A theoretical calculation further indicated that the nitrogen atom of SCN- showed preferential coordination to the K+ ions hosted by the crown ethers, while the NH4+ can form hydrogen bonds with the oxygen atoms in the studied crown ethers. The geometric constraints formed in the complex of crown ethers can cause a specific interaction between the NH4+ and SCN-, which can facilitate the intermolecular vibrational energy redistribution of the SCN-.
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Affiliation(s)
- Dexia Zhou
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an 710119, China
| | - Hongxing Hao
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an 710119, China
| | - Yinhua Ma
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an 710119, China
| | - Hongmei Zhong
- College of Chemistry and Materials Science, Fujian Provincial Key Laboratory of Advanced Materials Oriented Chemical Engineering, Fujian Normal University, Fuzhou, Fujian 350007, China
| | - Ya'nan Dai
- College of Chemistry and Materials Science, Fujian Provincial Key Laboratory of Advanced Materials Oriented Chemical Engineering, Fujian Normal University, Fuzhou, Fujian 350007, China
| | - Kaicong Cai
- College of Chemistry and Materials Science, Fujian Provincial Key Laboratory of Advanced Materials Oriented Chemical Engineering, Fujian Normal University, Fuzhou, Fujian 350007, China
| | - Somnath Mukherjee
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an 710119, China
| | - Jing Liu
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an 710119, China
| | - Hongtao Bian
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an 710119, China
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5
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Hao H, Xie Q, Ai J, Wang Y, Bian H. Specific counter-cation effect on the molecular orientation of thiocyanate anions at the aqueous solution interface. Phys Chem Chem Phys 2020; 22:10106-10115. [PMID: 32342973 DOI: 10.1039/d0cp00974a] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Understanding the interfacial structure of aqueous electrolyte solutions is important and relevant to a wide range of systems, ranging from atmospheric aerosols to electrochemistry, and biological environments. Though significant efforts have been made to unravel the interfacial structure of water molecules, the structure and dynamics of ions at the interface have not yet been fully elucidated. Here, the interfacial structure of the aqueous solution was investigated directly by monitoring the thiocyanate (SCN-) anions using surface-specific sum frequency generation (SFG) vibrational spectroscopy. The molecular orientation of the SCN- anions and their adsorption behavior at the air/water interface were systematically determined by quantitative polarization analysis. The transition dipole of the CN stretching of the SCN- anion is oriented around 44° from the surface normal of the NaSCN aqueous solution surface and remained unchanged with the bulk concentration varying from 1 mol kg-1 to 13 mol kg-1. The free energy of adsorption of SCN- anions at the air/water interface was determined to be -1.53 ± 0.04 kcal mol-1. Furthermore, a new SFG peak positioned at 2080 cm-1 in the ppp polarization combination was observed at the air/15.0 mol kg-1 NaSCN aqueous solution interface for the first time. Concentration-dependent SFG analysis and density functional theory (DFT) calculation further revealed that the SCN- anions form an ion clustering structure at the air/water interface. The subtle and specific Na+ and K+ counter-cation effects on the interfacial structure of the SCN- anions at the aqueous solution interface were also observed, which showed that ion cooperativity plays an important role in affecting the interfacial structure of ions at the air/water interface. The results are expected to yield significant insights into the understanding of the structure of aqueous solution surfaces and the molecular level mechanism of the cationic Hofmeister effect.
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Affiliation(s)
- Hongxing Hao
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an, 710119, China.
| | - Qing Xie
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an, 710119, China.
| | - Jingwen Ai
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an, 710119, China.
| | - Yuan Wang
- Institute of Science and Technology, University of Sanya, Sanya, Hainan 572022, China
| | - Hongtao Bian
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an, 710119, China.
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6
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Schmitz AJ, Pandey HD, Chalyavi F, Shi T, Fenlon EE, Brewer SH, Leitner DM, Tucker MJ. Tuning Molecular Vibrational Energy Flow within an Aromatic Scaffold via Anharmonic Coupling. J Phys Chem A 2019; 123:10571-10581. [PMID: 31735035 DOI: 10.1021/acs.jpca.9b08010] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
From guiding chemical reactivity in synthesis or protein folding to the design of energy diodes, intramolecular vibrational energy redistribution harnesses the power to influence the underlying fundamental principles of chemistry. To evaluate the ability to steer these processes, the mechanism and time scales of intramolecular vibrational energy redistribution through aromatic molecular scaffolds have been assessed by utilizing two-dimensional infrared (2D IR) spectroscopy. 2D IR cross peaks reveal energy relaxation through an aromatic scaffold from the azido- to the cyano-vibrational reporters in para-azidobenzonitrile (PAB) and para-(azidomethyl)benzonitrile (PAMB) prior to energy relaxation into the solvent. The rates of energy transfer are modulated by Fermi resonances, which are apparent by the coupling cross peaks identified within the 2D IR spectrum. Theoretical vibrational mode analysis allowed the determination of the origins of the energy flow, the transfer pathway, and a direct comparison of the associated transfer rates, which were in good agreement with the experimental results. Large variations in energy-transfer rates, approximately 1.9 ps for PAB and 23 ps for PAMB, illustrate the importance of strong anharmonic coupling, i.e., Fermi resonance, on the transfer pathways. In particular, vibrational energy rectification is altered by Fermi resonances of the cyano- and azido-modes allowing control of the propensity for energy flow.
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Affiliation(s)
- Andrew J Schmitz
- Department of Chemistry , University of Nevada , Reno , Nevada 89557 , United States
| | - Hari Datt Pandey
- Department of Chemistry , University of California , Riverside , California 92521 , United States
| | - Farzaneh Chalyavi
- Department of Chemistry , University of Nevada , Reno , Nevada 89557 , United States
| | - Tianjiao Shi
- Department of Chemistry , Franklin & Marshall College , Lancaster , Pennsylvania 17604-3003 , United States
| | - Edward E Fenlon
- Department of Chemistry , Franklin & Marshall College , Lancaster , Pennsylvania 17604-3003 , United States
| | - Scott H Brewer
- Department of Chemistry , Franklin & Marshall College , Lancaster , Pennsylvania 17604-3003 , United States
| | - David M Leitner
- Department of Chemistry , University of Nevada , Reno , Nevada 89557 , United States
| | - Matthew J Tucker
- Department of Chemistry , University of Nevada , Reno , Nevada 89557 , United States
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7
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Lewis NHC, Fournier JA, Carpenter WB, Tokmakoff A. Direct Observation of Ion Pairing in Aqueous Nitric Acid Using 2D Infrared Spectroscopy. J Phys Chem B 2018; 123:225-238. [DOI: 10.1021/acs.jpcb.8b10019] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Affiliation(s)
- Nicholas H. C. Lewis
- Department of Chemistry, James Franck Institute, and Institute for Biophysical Dynamics, The University of Chicago, Chicago, Illinois 60637, United States
| | - Joseph A. Fournier
- Department of Chemistry, Washington University in St. Louis, St. Louis, Missouri 63130, United States
| | - William B. Carpenter
- Department of Chemistry, James Franck Institute, and Institute for Biophysical Dynamics, The University of Chicago, Chicago, Illinois 60637, United States
| | - Andrei Tokmakoff
- Department of Chemistry, James Franck Institute, and Institute for Biophysical Dynamics, The University of Chicago, Chicago, Illinois 60637, United States
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8
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Roy VP, Kubarych KJ. Interfacial Hydration Dynamics in Cationic Micelles Using 2D-IR and NMR. J Phys Chem B 2017; 121:9621-9630. [DOI: 10.1021/acs.jpcb.7b08225] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Ved Prakash Roy
- Department of Chemistry, University of Michigan, 930 N. University Avenue, Ann Arbor, Michigan 48109, United States
| | - Kevin J. Kubarych
- Department of Chemistry, University of Michigan, 930 N. University Avenue, Ann Arbor, Michigan 48109, United States
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9
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Shen YN, Jiang B, Ge CQ, Deng GH, Chen HL, Yang XM, Yuan KJ, Zheng JR. Intermolecular Vibrational Energy Transfers in Melts and Solutions. CHINESE J CHEM PHYS 2016. [DOI: 10.1063/1674-0068/29/cjcp1602028] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
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10
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Schmitz AJ, Hogle DG, Gai XS, Fenlon EE, Brewer SH, Tucker MJ. Two-Dimensional Infrared Study of Vibrational Coupling between Azide and Nitrile Reporters in a RNA Nucleoside. J Phys Chem B 2016; 120:9387-94. [PMID: 27510724 DOI: 10.1021/acs.jpcb.6b07212] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
The vibrations in the azide, N3, asymmetric stretching region and nitrile, CN, symmetric stretching region of 2'-azido-5-cyano-2'-deoxyuridine (N3CNdU) are examined by two-dimensional infrared (2D IR) spectroscopy. At earlier waiting times, the 2D IR spectrum shows the presence of both vibrational transitions along the diagonal and off-diagonal cross peaks indicating vibrational coupling. The coupling strength is determined from the off-diagonal anharmonicity to be 66 cm(-1) for the intramolecular distance of ∼7.9 Å, based on a structural map generated for this model system. In addition, the frequency-frequency correlation decay is detected, monitoring the solvent dynamics around each individual probe position. Overall, these vibrational reporters can be utilized in tandem to simultaneously track global structural information and fast structural fluctuations.
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Affiliation(s)
- Andrew J Schmitz
- Department of Chemistry, University of Nevada , Reno, Nevada 89557, United States
| | - David G Hogle
- Department of Chemistry, University of Nevada , Reno, Nevada 89557, United States
| | - Xin Sonia Gai
- Department of Chemistry, Franklin & Marshall College , Lancaster, Pennsylvania 17604-3003, United States
| | - Edward E Fenlon
- Department of Chemistry, Franklin & Marshall College , Lancaster, Pennsylvania 17604-3003, United States
| | - Scott H Brewer
- Department of Chemistry, Franklin & Marshall College , Lancaster, Pennsylvania 17604-3003, United States
| | - Matthew J Tucker
- Department of Chemistry, University of Nevada , Reno, Nevada 89557, United States
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11
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Fournier JA, Carpenter W, De Marco L, Tokmakoff A. Interplay of Ion–Water and Water–Water Interactions within the Hydration Shells of Nitrate and Carbonate Directly Probed with 2D IR Spectroscopy. J Am Chem Soc 2016; 138:9634-45. [DOI: 10.1021/jacs.6b05122] [Citation(s) in RCA: 55] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Joseph A. Fournier
- Department
of Chemistry, Institute for Biophysical Dynamics, and James Franck
Institute, The University of Chicago, Chicago, Illinois 60637, United States
| | - William Carpenter
- Department
of Chemistry, Institute for Biophysical Dynamics, and James Franck
Institute, The University of Chicago, Chicago, Illinois 60637, United States
| | - Luigi De Marco
- Department
of Chemistry, Institute for Biophysical Dynamics, and James Franck
Institute, The University of Chicago, Chicago, Illinois 60637, United States
- Department
of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
| | - Andrei Tokmakoff
- Department
of Chemistry, Institute for Biophysical Dynamics, and James Franck
Institute, The University of Chicago, Chicago, Illinois 60637, United States
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12
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van der Vegt NFA, Haldrup K, Roke S, Zheng J, Lund M, Bakker HJ. Water-Mediated Ion Pairing: Occurrence and Relevance. Chem Rev 2016; 116:7626-41. [DOI: 10.1021/acs.chemrev.5b00742] [Citation(s) in RCA: 155] [Impact Index Per Article: 19.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Nico F. A. van der Vegt
- Eduard-Zintl-Institut
für Anorganische und Physikalische Chemie and Center of Smart
Interfaces, Technische Universität Darmstadt, Alarich-Weiss-Strasse
10, 64287 Darmstadt, Germany
| | - Kristoffer Haldrup
- Physics
Department, NEXMAP Section, Technical University of Denmark, Fysikvej
307, 2800 Kongens
Lyngby, Denmark
| | - Sylvie Roke
- Laboratory
for Fundamental BioPhotonics, Institute of Bioengineering, and Institute
of Materials Science, School of Engineering, and Lausanne Centre for
Ultrafast Science, École Polytechnique Fédérale de Lausanne, CH-1015 Lausanne, Switzerland
| | - Junrong Zheng
- College
of Chemistry and Molecular Engineering, Beijing National Laboratory
for Molecular Sciences, Peking University, Beijing 100871, China
- Department
of Chemistry, Rice University, 6100 Main Street, Houston, Texas 77005-1892, United States
| | - Mikael Lund
- Division
of Theoretical Chemistry, Department of Chemistry, Lund University, SE-22100 Lund, Sweden
| | - Huib J. Bakker
- FOM Institute AMOLF, Science
Park 104, 1098 XG Amsterdam, The Netherlands
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13
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Shen Y, Wu T, Jiang B, Deng G, Li J, Chen H, Guo X, Ge C, Chen Y, Hong J, Yang X, Yuan K, Zhuang W, Zheng J. Comparison Studies on Sub-Nanometer-Sized Ion Clusters in Aqueous Solutions: Vibrational Energy Transfers, MD Simulations, and Neutron Scattering. J Phys Chem B 2015; 119:9893-904. [DOI: 10.1021/acs.jpcb.5b04530] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Yuneng Shen
- State
Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of the Chemical Physics, Chinese Academy of Sciences, Dalian, 116023 Liaoning, China
- University of the Chinese Academy of Sciences, Beijing 100049, China
| | - Tianmin Wu
- Department
of Chemical Physics, University of Science and Technology of China, Hefei 230026, China
| | - Bo Jiang
- State
Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of the Chemical Physics, Chinese Academy of Sciences, Dalian, 116023 Liaoning, China
| | - Ganghua Deng
- State
Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of the Chemical Physics, Chinese Academy of Sciences, Dalian, 116023 Liaoning, China
| | - Jiebo Li
- Department
of Chemistry, Rice University, Houston, Texas 77005, United States
| | - Hailong Chen
- Department
of Chemistry, Rice University, Houston, Texas 77005, United States
| | - Xunmin Guo
- Department
of Chemistry, Rice University, Houston, Texas 77005, United States
| | - Chuanqi Ge
- State
Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of the Chemical Physics, Chinese Academy of Sciences, Dalian, 116023 Liaoning, China
- School
of Physics and Electronic Technology, Liaoning Normal University, Dalian 116029, China
| | - Yajing Chen
- State
Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of the Chemical Physics, Chinese Academy of Sciences, Dalian, 116023 Liaoning, China
| | - Jieya Hong
- State
Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of the Chemical Physics, Chinese Academy of Sciences, Dalian, 116023 Liaoning, China
| | - Xueming Yang
- State
Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of the Chemical Physics, Chinese Academy of Sciences, Dalian, 116023 Liaoning, China
| | - Kaijun Yuan
- State
Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of the Chemical Physics, Chinese Academy of Sciences, Dalian, 116023 Liaoning, China
| | - Wei Zhuang
- State
Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of the Chemical Physics, Chinese Academy of Sciences, Dalian, 116023 Liaoning, China
| | - Junrong Zheng
- Department
of Chemistry, Rice University, Houston, Texas 77005, United States
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14
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Pan Z, Wu T, Jin T, Liu Y, Nagata Y, Zhang R, Zhuang W. Low frequency 2D Raman-THz spectroscopy of ionic solution: A simulation study. J Chem Phys 2015; 142:212419. [DOI: 10.1063/1.4917260] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Zhijun Pan
- Department of Chemical Physics, University of Science and Technology of China, Hefei 230026, China
| | - Tianmin Wu
- Department of Chemical Physics, University of Science and Technology of China, Hefei 230026, China
| | - Tan Jin
- State Key Lab of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, China
| | - Yong Liu
- State Key Lab of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, China
| | - Yuki Nagata
- Department for Molecular Spectroscopy, Max-Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
| | - Ruiting Zhang
- State Key Lab of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, China
| | - Wei Zhuang
- State Key Lab of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, China
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15
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Chen H, Bian H, Li J, Wen X, Zhang Q, Zhuang W, Zheng J. Vibrational Energy Transfer: An Angstrom Molecular Ruler in Studies of Ion Pairing and Clustering in Aqueous Solutions. J Phys Chem B 2015; 119:4333-49. [DOI: 10.1021/jp512320a] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Hailong Chen
- Department
of Chemistry, Rice University, 6100 Main Street, Houston, Texas 77005-1892, United States
| | - Hongtao Bian
- Department
of Chemistry, Rice University, 6100 Main Street, Houston, Texas 77005-1892, United States
| | - Jiebo Li
- Department
of Chemistry, Rice University, 6100 Main Street, Houston, Texas 77005-1892, United States
| | - Xiewen Wen
- Department
of Chemistry, Rice University, 6100 Main Street, Houston, Texas 77005-1892, United States
| | - Qiang Zhang
- Institute of Chemistry,
Chemical Engineering and Food Safety, Bohai University, Jinzhou 121000, People’s Republic of China
| | - Wei Zhuang
- State Key Laboratory
of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, Liaoning, People’s Republic of China
| | - Junrong Zheng
- Department
of Chemistry, Rice University, 6100 Main Street, Houston, Texas 77005-1892, United States
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16
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De Marco L, Thämer M, Reppert M, Tokmakoff A. Direct observation of intermolecular interactions mediated by hydrogen bonding. J Chem Phys 2014; 141:034502. [DOI: 10.1063/1.4885145] [Citation(s) in RCA: 41] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022] Open
Affiliation(s)
- Luigi De Marco
- Department of Chemistry, Massachusetts Institute of Technology, 77 Massachusetts Ave., Cambridge, Massachusetts 02139, USA
- Department of Chemistry, James Frank Institute and The Institute for Biophysical Dynamics, The University of Chicago, 929 E 57th Street, Chicago, Illinois 60637, USA
| | - Martin Thämer
- Department of Chemistry, James Frank Institute and The Institute for Biophysical Dynamics, The University of Chicago, 929 E 57th Street, Chicago, Illinois 60637, USA
| | - Mike Reppert
- Department of Chemistry, Massachusetts Institute of Technology, 77 Massachusetts Ave., Cambridge, Massachusetts 02139, USA
- Department of Chemistry, James Frank Institute and The Institute for Biophysical Dynamics, The University of Chicago, 929 E 57th Street, Chicago, Illinois 60637, USA
| | - Andrei Tokmakoff
- Department of Chemistry, James Frank Institute and The Institute for Biophysical Dynamics, The University of Chicago, 929 E 57th Street, Chicago, Illinois 60637, USA
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17
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Chen H, Wen X, Guo X, Zheng J. Intermolecular vibrational energy transfers in liquids and solids. Phys Chem Chem Phys 2014; 16:13995-4014. [DOI: 10.1039/c4cp01300j] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Resonant and nonresonant intermolecular vibrational energy transfers in liquids and solids are measured and elucidated using two competing mechanisms.
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Affiliation(s)
- Hailong Chen
- Department of Chemistry
- Rice University
- Houston, USA
| | - Xiewen Wen
- Department of Chemistry
- Rice University
- Houston, USA
| | - Xunmin Guo
- Department of Chemistry
- Rice University
- Houston, USA
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18
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Ashihara S. ELECTROCHEMISTRY 2014; 82:762-765. [DOI: 10.5796/electrochemistry.82.762] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] Open
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19
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Sokolowsky KP, Fayer MD. Dynamics in the isotropic phase of nematogens using 2D IR vibrational echo measurements on natural-abundance 13CN and extended lifetime probes. J Phys Chem B 2013; 117:15060-71. [PMID: 24156524 DOI: 10.1021/jp4071955] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The long time scale orientational relaxation of nematogens in the isotropic phase is associated with the randomization of pseudonematic domains, which have a correlation length that grows as the isotropic-to-nematic phase transition temperature is approached from above. Here we begin to address the fast dynamics of the nematogen molecules within the domains using two-dimensional infrared (2D IR) vibrational echo experiments. The problems of performing ultrafast IR experiments in pure liquids are discussed, and solutions are presented. In addition, the issue of short vibrational lifetimes, which limit the ability of 2D IR experiments to examine dynamics over a wide range of times, is addressed. The experiments were performed on the nematogen 4-cyano-4'-pentylbiphenyl (5CB), with the CN stretch initially used as the vibrational probe. Although the CN stretch has a small transition dipole, because the sample is a pure liquid it is necessary to use an exceedingly thin sample to perform the experiments. The small sample volume leads to massive heating effects that distort the results. In addition, the high concentration in the pure liquid can result in vibrational excitation transfer that interferes with the measurements of structural dynamics, and the CN vibrational lifetime is very short (3.6 ps). These problems were overcome by performing the experiments on the natural-abundance (13)CN stretch (5(13)CB), which greatly reduced the absorbance, eliminating the heating problems; also, this stretch has a longer lifetime (7.9 ps). Experiments were also performed on benzonitrile, which showed that the heating problems associated with pure liquids are not unique to 5CB. Again, the problems were eliminated by conducting measurements on the (13)CN stretch, which has an even longer lifetime (20.2 ps) compared with the (12)CN stretch (5.6 ps). Finally, to extend the range of the dynamical measurements, 4-pentyl-4'-thiocyanobiphenyl (5SCB) was synthesized and studied as a dilute solute in 5CB. The CN stretch of 5SCB has a vibrational lifetime of 103 ps, which permits dynamical measurements to 200 ps, revealing the full range of fast structural dynamics in the isotropic phase of 5CB. It is shown that the 5SCB probe reports essentially the same dynamics as 5(13)CB on the short time scale that is observable with the 5(13)CB vibrational probe.
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Affiliation(s)
- Kathleen P Sokolowsky
- Department of Chemistry, Stanford University , Stanford, California 94305, United States
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20
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Chen H, Bian H, Li J, Guo X, Wen X, Zheng J. Molecular conformations of crystalline L-cysteine determined with vibrational cross angle measurements. J Phys Chem B 2013; 117:15614-24. [PMID: 23981130 DOI: 10.1021/jp406232k] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The molecular conformations of crystalline L-cysteine prepared in its orthorhombic form were determined by the vibrational cross angle measurements. Its major dihedral angles of chemical bonds determined by this method are consistent with the results from diffraction experiments. In addition, the relative orientations of the chemical bonds associated with the hydrogen atoms of the NH3(+) group and the thiol group are also determined. The results demonstrate that the vibrational cross angle method based on the multiple-mode approach can potentially become a structural tool for determining molecular conformations. The major challenges for the method to become a general molecular structural tool are discussed, and some approaches to address them are proposed.
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Affiliation(s)
- Hailong Chen
- Department of Chemistry, Rice University , Houston, Texas 77005, United States
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21
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Zhang R, Zhuang W. Effect of Ion Pairing on the Solution Dynamics Investigated by the Simulations of the Optical Kerr Effect and the Dielectric Relaxation Spectra. J Phys Chem B 2013; 117:15395-406. [DOI: 10.1021/jp404923y] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Affiliation(s)
- Ruiting Zhang
- State Key
Lab of Molecular Reaction Dynamics, Dalian
Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, China
| | - Wei Zhuang
- State Key
Lab of Molecular Reaction Dynamics, Dalian
Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, China
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22
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Zhao W, He A, Xu Y. Raman second hyperpolarizability determination using computational Raman activities and a comparison with experiments. J Phys Chem A 2013; 117:6217-23. [PMID: 23683174 DOI: 10.1021/jp400447a] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Doubly vibrationally enhanced (DOVE) four-wave mixing spectroscopy, an optical analogue to 2D NMR, involves two infrared transitions and a Raman transition. The magnitude of the DOVE second hyperpolarizability γ (or third-order susceptibility χ((3))) can be theoretically estimated if the values of the dipolar moments of the two infrared transitions and the γ of the Raman transition are known. The Raman γ can be measured by using the four-wave mixing interferometric method or conventional Raman spectroscopy in the presence of an internal standard. In this work, we examine if one can use the Raman activity computed from density functional theory calculation to determine the Raman γ of selected vibrational modes of several samples including deuterated benzene, acetonitrile, tetrahydrofuran, and sodium benzoate aqueous solution. The 992 cm(-1) Raman band of benzene serves as an internal standard for organic solvents, and the 880 cm(-1) Raman band of hydrogen peroxide is for the aqueous solution sample with known γ values. We have found that the predicted Raman γ values from the computational Raman activities match experimental data reasonably well, suggesting a facile approach to predict the Raman γ of interested systems.
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Affiliation(s)
- Wei Zhao
- Department of Chemistry, University of Arkansas at Little Rock, 2801 South University Avenue, Little Rock, Arkansas 72204, USA.
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23
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Bian H, Chen H, Zhang Q, Li J, Wen X, Zhuang W, Zheng J. Cation effects on rotational dynamics of anions and water molecules in alkali (Li+, Na+, K+, Cs+) thiocyanate (SCN-) aqueous solutions. J Phys Chem B 2013; 117:7972-84. [PMID: 23763605 DOI: 10.1021/jp4016646] [Citation(s) in RCA: 53] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
Waiting time dependent rotational anisotropies of SCN(-) anions and water molecules in alkali thiocyanate (XSCN, X = Li, Na, K, Cs) aqueous solutions at various concentrations were measured with ultrafast infrared spectroscopy. It was found that cations can significantly affect the reorientational motions of both water molecules and SCN(-) anions. The dynamics are slower in a solution with a smaller cation. The reorientational time constants follow the order of Li(+) > Na(+) > K(+) ~/= Cs(+). The changes of rotational time constants of SCN(-) at various concentrations scale almost linearly with the changes of solution viscosity, but those of water molecules do not. In addition, the concentration-dependent amplitudes of dynamical changes are much more significant in the Li(+) and Na(+) solutions than those in the K(+) and Cs(+) solutions. Further investigations on the systems with the ultrafast vibrational energy exchange method and molecular dynamics simulations provide an explanation for the observations: the observed rotational dynamics are the balanced results of ion clustering and cation/anion/water direct interactions. In all the solutions at high concentrations (>5 M), substantial amounts of ions form clusters. The structural inhomogeneity in the solutions leads to distinct rotational dynamics of water and anions. The strong interactions of Li(+) and Na(+) because of their relatively large charge densities with water molecules and SCN(-) anions, in addition to the likely geometric confinements because of ion clustering, substantially slow down the rotations of SCN(-) anions and water molecules inside the ion clusters. The interactions of K(+) and Cs(+) with water or SCN(-) are much weaker. The rotations of water molecules inside ion clusters of K(+) and Cs(+) solutions are not significantly different from those of other water species so that the experimentally observed rotational relaxation dynamics are only slightly affected by the ion concentrations.
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Affiliation(s)
- Hongtao Bian
- Department of Chemistry, Rice University, Houston, Texas 77005, USA
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24
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Chen H, Bian H, Li J, Wen X, Zheng J. Relative Intermolecular Orientation Probed via Molecular Heat Transport. J Phys Chem A 2013; 117:6052-65. [DOI: 10.1021/jp312604v] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Hailong Chen
- Department of Chemistry, Rice University, Houston, Texas 77005, United States
| | - Hongtao Bian
- Department of Chemistry, Rice University, Houston, Texas 77005, United States
| | - Jiebo Li
- Department of Chemistry, Rice University, Houston, Texas 77005, United States
| | - Xiewen Wen
- Department of Chemistry, Rice University, Houston, Texas 77005, United States
| | - Junrong Zheng
- Department of Chemistry, Rice University, Houston, Texas 77005, United States
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25
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Zhang Q, Xie W, Bian H, Gao YQ, Zheng J, Zhuang W. Microscopic Origin of the Deviation from Stokes–Einstein Behavior Observed in Dynamics of the KSCN Aqueous Solutions: A MD Simulation Study. J Phys Chem B 2013; 117:2992-3004. [DOI: 10.1021/jp400441e] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Affiliation(s)
- Qiang Zhang
- State Key Laboratory of Molecular
Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, Liaoning,
People’s Republic of China
- Department of Chemistry, Bohai University, Jinzhou 121000, China
| | - Wenjun Xie
- College of Chemistry and Molecular
Engineering, Beijing National Laboratory for Molecular Sciences, Peking University, Beijing 100871, China
| | - HongTao Bian
- Department of Chemistry, Rice University, Houston, Texas 77005, United States
| | - Yi Qin Gao
- College of Chemistry and Molecular
Engineering, Beijing National Laboratory for Molecular Sciences, Peking University, Beijing 100871, China
| | - Junrong Zheng
- Department of Chemistry, Rice University, Houston, Texas 77005, United States
| | - Wei Zhuang
- State Key Laboratory of Molecular
Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, Liaoning,
People’s Republic of China
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26
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Li J, Bian H, Wen X, Chen H, Yuan K, Zheng J. Probing ion/molecule interactions in aqueous solutions with vibrational energy transfer. J Phys Chem B 2012; 116:12284-94. [PMID: 22984821 DOI: 10.1021/jp306369w] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Interactions between model molecules representing building blocks of proteins and the thiocyanate anion, a strong protein denaturant agent, were investigated in aqueous solutions with intermolecular vibrational energy exchange methods. It was found that thiocyanate anions are able to bind to the charged ammonium groups of amino acids in aqueous solutions. The interactions between thiocyanate anions and the amide groups were also observed. The binding affinity between the thiocyanate anion and the charged amino acid residues is about 20 times larger than that between water molecules and the amino acids and about 5-10 times larger than that between the thiocyanate anion and the neutral backbone amide groups. The series of experiments also demonstrates that the chemical nature, rather than the macroscopic dielectric constant, of the ions and molecules plays a critical role in ion/molecule interactions in aqueous solutions.
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Affiliation(s)
- Jiebo Li
- Department of Chemistry, Rice University, Houston, Texas 77005, USA
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