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Kurzydłowski D, Chumak T, Rogoża J, Listkowski A. Hydrogen-Bonded Cyclic Dimers at Large Compression: The Case of 1 H-pyrrolo[3,2- h]quinoline and 2-(2'-pyridyl)pyrrole. Molecules 2021; 26:molecules26133802. [PMID: 34206494 PMCID: PMC8270273 DOI: 10.3390/molecules26133802] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2021] [Revised: 06/18/2021] [Accepted: 06/19/2021] [Indexed: 11/17/2022] Open
Abstract
1H-pyrrolo[3,2-h]qinoline (PQ) and 2-(2′-pyridyl)pyrrole (PP) are important systems in the study of proton-transfer reactions. These molecules possess hydrogen bond donor (pyrrole) and acceptor (pyridine) groups, which leads to the formation of cyclic dimers in their crystals. Herein, we present a joint experimental (Raman scattering) and computational (DFT modelling) study on the high-pressure behaviour of PQ and PP molecular crystals. Our results indicate that compression up to 10 GPa (100 kbar) leads to considerable strengthening of the intermolecular hydrogen bond within the cyclic dimers. However, the intramolecular N–H∙∙∙N interaction is either weakly affected by pressure, as witnessed in PQ, or weakened due to compression-induced distortions of the molecule, as was found for PP. Therefore, we propose that the compression of these systems should facilitate double proton transfer within the cyclic dimers of PQ and PP, while intramolecular transfer should either remain unaffected (for PQ) or weakened (for PP).
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Affiliation(s)
- Dominik Kurzydłowski
- Faculty of Mathematics and Natural Sciences, Cardinal Stefan Wyszyński University, 01-038 Warsaw, Poland; (T.C.); (A.L.)
- Correspondence:
| | - Taisiia Chumak
- Faculty of Mathematics and Natural Sciences, Cardinal Stefan Wyszyński University, 01-038 Warsaw, Poland; (T.C.); (A.L.)
| | - Jakub Rogoża
- Faculty of Physics, University of Warsaw, 02-093 Warsaw, Poland;
| | - Arkadiusz Listkowski
- Faculty of Mathematics and Natural Sciences, Cardinal Stefan Wyszyński University, 01-038 Warsaw, Poland; (T.C.); (A.L.)
- Institute of Physical Chemistry, Polish Academy of Sciences, 01-224 Warsaw, Poland
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2
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Gorski A, Golec B, Wałecki W, Peukert S, Gil M, Gawinkowski S, Waluk J. Matrix isolation studies of vibrational structure of hemiporphycene. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2020.128497] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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3
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Barclay MS, Elles CG, Caricato M. Benchmark Study of Ground-State Raman Spectra in Conjugated Molecules. J Chem Theory Comput 2019; 16:612-620. [DOI: 10.1021/acs.jctc.9b00960] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Matthew S. Barclay
- Department of Chemistry, University of Kansas, Lawrence, Kansas 66045, United States
| | - Christopher G. Elles
- Department of Chemistry, University of Kansas, Lawrence, Kansas 66045, United States
| | - Marco Caricato
- Department of Chemistry, University of Kansas, Lawrence, Kansas 66045, United States
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4
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Katsyuba SA, Zvereva EE, Grimme S. Fast Quantum Chemical Simulations of Infrared Spectra of Organic Compounds with the B97-3c Composite Method. J Phys Chem A 2019; 123:3802-3808. [PMID: 30958005 DOI: 10.1021/acs.jpca.9b01688] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The ability of the quantum chemical computations to reproduce spectral positions and relative intensities of infrared (IR) bands for experimental vibrational spectra of organic molecules is assessed. The efficient B97-3c density functional approximation, routinely applicable to hundreds of atoms on a single processor, has been applied for the simulation of IR spectra for species containing up to 216 atoms. The results demonstrate that B97-3c, being much faster than the well-recognized hybrid functional B3LYP, offers similarly good quantitative performance in comparison to experimental data for relative IR intensities and fundamental frequencies (ν ≤ 2200 cm-1) for isolated molecules comprising from 3 to 21 first- or second-row atoms.
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Affiliation(s)
- Sergey A Katsyuba
- Arbuzov Institute of Organic and Physical Chemistry, FRC Kazan Scientific Centre of RAS , Arbuzov street, 8 , Kazan 420088 , Russia
| | - Elena E Zvereva
- Arbuzov Institute of Organic and Physical Chemistry, FRC Kazan Scientific Centre of RAS , Arbuzov street, 8 , Kazan 420088 , Russia
| | - Stefan Grimme
- Mulliken Center for Theoretical Chemistry , Institut für Physikalische und Theoretische Chemie der Universität Bonn , Beringstr. 4 , 53115 Bonn , Germany
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5
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Barclay MS, Quincy TJ, Williams-Young DB, Caricato M, Elles CG. Accurate Assignments of Excited-State Resonance Raman Spectra: A Benchmark Study Combining Experiment and Theory. J Phys Chem A 2017; 121:7937-7946. [DOI: 10.1021/acs.jpca.7b09467] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Matthew S. Barclay
- Department
of Chemistry, University of Kansas, Lawrence, Kansas 66045, United States
| | - Timothy J. Quincy
- Department
of Chemistry, University of Kansas, Lawrence, Kansas 66045, United States
| | | | - Marco Caricato
- Department
of Chemistry, University of Kansas, Lawrence, Kansas 66045, United States
| | - Christopher G. Elles
- Department
of Chemistry, University of Kansas, Lawrence, Kansas 66045, United States
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6
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Zilberg S, Dick B. Less stable tautomers form stronger hydrogen bonds: the case of water complexes. Phys Chem Chem Phys 2017; 19:25086-25094. [PMID: 28880041 DOI: 10.1039/c7cp04105e] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Abstract
Hydrogen bonding in cyclic complexes of water with tautomeric pairs of molecules M0 and M1 is calculated to be stronger by more than 25% for the less stable tautomer M1 in all cases where the energy gap between the two tautomers is large (ΔE(M0 − M1) > 10 kcal mol−1).
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Affiliation(s)
- Shmuel Zilberg
- Chemical Sciences Department
- Ariel University
- Ariel 40700
- Israel
| | - Bernhard Dick
- Institute of Physical and Theoretical Chemistry
- University of Regensburg
- 93040 Regensburg
- Germany
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7
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4,4′-methylene diphenyl diisocyanate – Conformational space, normal vibrations and infrared spectra. POLYMER 2016. [DOI: 10.1016/j.polymer.2016.07.075] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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8
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Ramírez M, Vargas J, Springborg M. Energetic, Structural, and Vibrational Properties of 4,4'-Methylenediphenyl Diisocyanate with Relevance for Adhesion. J Phys Chem A 2016; 120:4256-66. [PMID: 27232061 DOI: 10.1021/acs.jpca.6b04431] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Through a polymerization process, the monomer 4,4'-methylenediphenyl diisocyanate can participate in glueing, whereby strong covalent bonds between the monomer and the substrates that will be glued have to be formed. In the present work, we use density functional theory (DFT) calculations to study a group of properties that are important for the initial steps of this process and for its experimental characterization. We focus on energetic and structural properties of a single monomer of 4,4'-methylenediphenyl diisocyanate as obtained using different theoretical approaches. We demonstrate that the molecule is chiral and that for each chirality, three different structures, differing in the orientations of the isocyanate groups, can be identified. The molecule is soft against certain geometry transformations and can, accordingly, easily take a structure that is optimal for the formation of covalent bonds with a substrate. Infrared spectroscopy may be used in identifying these covalent bonds, and therefore, these spectra were calculated, and we identify the most relevant vibrations in this context. Finally, changes in the properties when the monomer was modified or when it was allowed to interact with other molecules were studied, too.
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Affiliation(s)
- Max Ramírez
- Departamento de Física, Facultad de Ciencias, Universidad de Chile , Casilla 653, Santiago, Chile 7800024.,Physical and Theoretical Chemistry, University of Saarland , 66123 Saarbrücken, Germany.,Centro para el Desarrollo de la Nanociencia y la Nanotecnología (CEDENNA) , Avda. Ecuador 3493, Santiago, Chile 9170124
| | - Jorge Vargas
- Physical and Theoretical Chemistry, University of Saarland , 66123 Saarbrücken, Germany.,Instituto de Investigaciones en Materiales, Universidad Nacional Autónoma de México , C.P. 04510, México Ciudad, D.F., Mexico
| | - Michael Springborg
- Physical and Theoretical Chemistry, University of Saarland , 66123 Saarbrücken, Germany.,School of Materials Science and Engineering, Tianjin University , Tianjin 300072, China
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Csontos J, Nagy B, Gyevi-Nagy L, Kállay M, Tasi G. Enthalpy Differences of the n-Pentane Conformers. J Chem Theory Comput 2016; 12:2679-88. [DOI: 10.1021/acs.jctc.6b00280] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- József Csontos
- MTA-BME
Lendület Quantum Chemistry Research Group, Department of Physical
Chemistry and Materials Science, Budapest University of Technology and Economics, H-1521 Budapest, P.O. Box
91, Hungary
| | - Balázs Nagy
- MTA-BME
Lendület Quantum Chemistry Research Group, Department of Physical
Chemistry and Materials Science, Budapest University of Technology and Economics, H-1521 Budapest, P.O. Box
91, Hungary
- Department
of Chemistry, Aarhus University, Langelandsgade 140, 8000 Aarhus, Denmark
| | - László Gyevi-Nagy
- Department
of Applied and Environmental Chemistry, University of Szeged, Rerrich B. tér 1., H-6720 Szeged, Hungary
| | - Mihály Kállay
- MTA-BME
Lendület Quantum Chemistry Research Group, Department of Physical
Chemistry and Materials Science, Budapest University of Technology and Economics, H-1521 Budapest, P.O. Box
91, Hungary
| | - Gyula Tasi
- Department
of Applied and Environmental Chemistry, University of Szeged, Rerrich B. tér 1., H-6720 Szeged, Hungary
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10
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Kungwan N, Daengngern R, Piansawan T, Hannongbua S, Barbatti M. Theoretical study on excited-state intermolecular proton transfer reactions of 1H-pyrrolo[3,2-h]quinoline with water and methanol. Theor Chem Acc 2013. [DOI: 10.1007/s00214-013-1397-x] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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11
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Mengesha ET, Sepioł J, Borowicz P, Waluk J. Vibrations of porphycene in the S0 and S1 electronic states: Single vibronic level dispersed fluorescence study in a supersonic jet. J Chem Phys 2013; 138:174201. [DOI: 10.1063/1.4802769] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022] Open
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