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Santos EJA, Giozza WF, de Souza Júnior RT, Nepomuceno Cavalcante NJ, Ribeiro Júnior LA, Lopes Lima KA. On the CO[Formula: see text] adsorption in a boron nitride analog for the recently synthesized biphenylene network: a DFT study. J Mol Model 2023; 29:327. [PMID: 37773546 DOI: 10.1007/s00894-023-05709-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2023] [Accepted: 08/28/2023] [Indexed: 10/01/2023]
Abstract
CONTEXT Recent advances in nanomaterial synthesis and characterization have led to exploring novel 2D materials. The biphenylene network (BPN) is a notable achievement in current fabrication efforts. Numerical studies have indicated the stability of its boron nitride counterpart, known as BN-BPN. In this study, we employ computational simulations to investigate the electronic and structural properties of pristine and doped BN-BPN monolayers upon CO[Formula: see text] adsorption. Our findings demonstrate that pristine BN-BPN layers exhibit moderate adsorption energies for CO[Formula: see text] molecules, approximately [Formula: see text]0.16 eV, indicating physisorption. However, introducing one-atom doping with silver, germanium, nickel, palladium, platinum, or silicon significantly enhances CO[Formula: see text] adsorption, leading to adsorption energies ranging from [Formula: see text]0.13 to [Formula: see text]0.65 eV. This enhancement indicates the presence of both physisorption and chemisorption mechanisms. BN-BPN does not show precise CO[Formula: see text] sensing and selectivity. Furthermore, our investigation of the recovery time for adsorbed CO[Formula: see text] molecules suggests that the interaction between BN-BPN and CO[Formula: see text] cannot modify the electronic properties of BN-BPN before the CO[Formula: see text] molecules escape. METHODS We performed density functional theory (DFT) simulations using the DMol3 code in the Biovia Materials Studio software. We incorporated Van der Waals corrections (DFT-D) within the Grimme scheme for an accurate representation. The exchange and correlation functions were treated using the Perdew-Burke-Ernzerhof (PBE) functional within the generalized gradient approximation (GGA). We used a double-zeta plus polarization (DZP) basis set to describe the electronic structure. Additionally, we accounted for the basis set superposition error (BSSE) through the counterpoise method. We included semicore DFT pseudopotentials to accurately model the interactions between the nuclei and valence electrons.
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Affiliation(s)
- Emanuel J A Santos
- Department of Physics, State University of Piauí, Teresina, Piauí, 64002-150, Brazil
| | - William F Giozza
- Faculty of Technology, Department of Electrical Engineering, University of Brasília, Brasília, Brazil
| | - Rafael T de Souza Júnior
- Faculty of Technology, Department of Electrical Engineering, University of Brasília, Brasília, Brazil
| | | | - Luiz A Ribeiro Júnior
- University of Brasilia, Institute of Physics, Brasília, 70910-900, Brazil.
- Computational Materials Laboratory, LCCMat, Institute of Physics, University of Brasília, Brasília, 70910-900, Brazil.
| | - Kleuton A Lopes Lima
- Department of Physics, State University of Piauí, Teresina, Piauí, 64002-150, Brazil
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Martins DAF, Lima KA, Monteiro FF, Pereira ML, Ribeiro LA, Macedo-Filho A. Examining O[Formula: see text] adsorption on pristine and defective popgraphene sheets: A DFT study. J Mol Model 2023; 29:328. [PMID: 37773299 DOI: 10.1007/s00894-023-05692-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2023] [Accepted: 08/11/2023] [Indexed: 10/01/2023]
Abstract
CONTEXT Popgraphene (PopG) is a two-dimensional carbon-based material with fused pentagonal and octagonal rings. Like graphene, it exhibits a metallic band gap and exceptional thermal, dynamic, and mechanical stability. Here, we theoretically study the electronic and structural properties of PopG monolayers, including their doped and vacancy-endowed versions, as O[Formula: see text] adsorbers. Our findings show that pristine and vacancy-endowed PopG sheets have a comparable ability to adsorb O[Formula: see text] molecules, with adsorption energies ranging from [Formula: see text]0.57 to [Formula: see text]0.59 eV (physisorption). In these cases, octagonal rings play a dominant role in the adsorption mechanism. Platinum and Silicon doping enhance the O[Formula: see text] adsorption in areas close to the octagonal rings, resulting in adsorption energies ranging from [Formula: see text]1.13 to [Formula: see text]2.56 eV (chemisorption). Furthermore, we computed the recovery time for the adsorbed O[Formula: see text] molecules. The results suggest that PopG/O[Formula: see text] interaction in pristine and vacancy-endowed cases can change the PopG electronic properties before O[Formula: see text] diffusion. METHODS Density Functional Theory (DFT) simulations, with Van der Waals corrections (DFT-D, within the Grimme scheme), were performed to study the structural and electronic properties of PopG/O[Formula: see text] systems using the DMol3 code within the Biovia Materials Studio software. The exchange and correlation functions are treated within the generalized gradient approximation (GGA) as parameterized by Perdew-Burke-Ernzerhof (PBE) functional. We used the double-zeta plus polarization (DZP) for the basis set in these cases. We also considered the BSSE correction through the counterpoise method and the nuclei-valence electron interactions by including semi-core DFT pseudopotentials.
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Affiliation(s)
- David A F Martins
- Department of Physics, State University of Piauí, 64002-150, Teresina, Piauí, Brazil
| | - Kleuton A Lima
- Department of Physics, State University of Piauí, 64002-150, Teresina, Piauí, Brazil
| | - Fábio F Monteiro
- Institute of Physics, University of Brasilia, 70910-900, Brasília, Brazil
| | - Marcelo L Pereira
- University of Brasília, Faculty of Technology, Department of Electrical Engineering, 70910-900, Brasília, Brazil.
| | - Luiz A Ribeiro
- Institute of Physics, University of Brasilia, 70910-900, Brasília, Brazil
| | - Antonio Macedo-Filho
- Department of Physics, State University of Piauí, 64002-150, Teresina, Piauí, Brazil
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Lima KAL, Pereira Júnior ML, Monteiro FF, Roncaratti LF, Ribeiro Júnior LA. O 2 adsorption on defective Penta-Graphene lattices: A DFT study. Chem Phys Lett 2021. [DOI: 10.1016/j.cplett.2020.138229] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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Carvalho CMC, Gargano R, Martins JBL, Politi JRS. Accurate spectroscopic properties by diffusion quantum Monte Carlo calculations. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2020; 243:118707. [PMID: 32827906 DOI: 10.1016/j.saa.2020.118707] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/28/2020] [Revised: 07/05/2020] [Accepted: 07/13/2020] [Indexed: 06/11/2023]
Abstract
The capability of Diffusion Quantum Monte Carlo (DMC) to produce high quality potential energy curve (PEC) was evaluated. H2+, HeH+ and LiH PECs were built by all-electron fixed-node DMC calculations. Trial wave functions were obtained from Hartree-Fock (HF) (H2+), MCSCF and CI (HeH+ and LiH) calculations multiplied by Jastrow factor. The quality of these generated PECs was analyzed throughout equilibrium distance, dissociation energy, vibrational energies and rovibrational spectroscopic constants (ωe, ωexe, ωeye, αe, γe and Be). The Discrete Variable Representation (DVR) and the Dunham approaches were used to determine the rovibrational spectroscopic constants. The PECs and the aforementioned properties were also obtained by the following methods: MCSCF/aug-cc-pV5Z (LiH), CCSD(T)/aug-cc-pV5Z (HeH+ and LiH) and HF (H2+ and HeH+) levels. The results of these DMC computations, specially the DMC-DVR procedure, are the most accurate among others DMC calculations available in the literature for these systems. They suggest that DMC can be used to achieve accurate PECs to produce spectroscopic properties with the same level of accuracy of theoretical benchmarks and experimental data of the literature.
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Affiliation(s)
- Cassius M C Carvalho
- Institute of Chemistry, University of Brasília, Campus Darcy Ribeiro, Brasília, DF, Brazil
| | - Ricardo Gargano
- Institute of Physics, University of Brasília, Campus Darcy Ribeiro, Brasília, DF, Brazil
| | - João B L Martins
- Institute of Chemistry, University of Brasília, Campus Darcy Ribeiro, Brasília, DF, Brazil
| | - José Roberto S Politi
- Institute of Chemistry, University of Brasília, Campus Darcy Ribeiro, Brasília, DF, Brazil.
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Martins JBL, Quintino RP, Politi JRDS, Sethio D, Gargano R, Kraka E. Computational analysis of vibrational frequencies and rovibrational spectroscopic constants of hydrogen sulfide dimer using MP2 and CCSD(T). SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2020; 239:118540. [PMID: 32502813 DOI: 10.1016/j.saa.2020.118540] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/18/2020] [Revised: 05/18/2020] [Accepted: 05/24/2020] [Indexed: 06/11/2023]
Abstract
Previous studies have shown that the weakly bonded H2S dimer demands high level quantum chemical calculations to reproduce experimental values. We investigated the hydrogen bonding of H2S dimer using MP2 and CCSD(T) levels of theory in combination with aug-cc-pV(D,T,Q)Z basis sets. More precisely, the binding energies, potential energy curves, rovibrational spectroscopic constants, decomposition lifetime, and normal vibrational frequencies were calculated. In addition, we introduced the local mode analysis of Konkoli-Cremer to quantify the hydrogen bonding in the H2S dimer as well as providing for the first time the comprehensive decomposition of normal vibrational modes into local modes contributions, and a decomposition lifetime based on rate constant. The local mode force constant of the H2S dimer hydrogen bond is smaller than that of the water dimer, in accordance with the weaker hydrogen bonding in the H2S dimer.
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Affiliation(s)
- João B L Martins
- Institute of Chemistry, University of Brasília, Brasília, DF 70910-900, Brazil.
| | - Rabeshe P Quintino
- Institute of Chemistry, University of Brasília, Brasília, DF 70910-900, Brazil
| | - José R Dos S Politi
- Institute of Chemistry, University of Brasília, Brasília, DF 70910-900, Brazil
| | - Daniel Sethio
- Computational and Theoretical Chemistry Group (CATCO), Department of Chemistry, Southern Methodist University, 3215 Daniel Avenue, Dallas, TX 75275-0314, United States
| | - Ricardo Gargano
- Institute of Physics, University of Brasília, Brasília, DF 70910-900, Brazil
| | - Elfi Kraka
- Computational and Theoretical Chemistry Group (CATCO), Department of Chemistry, Southern Methodist University, 3215 Daniel Avenue, Dallas, TX 75275-0314, United States
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Vieira LR, de Brito SF, Barbosa MR, Lopes TO, Machado DFS, de Oliveira HCB. Non-covalent interactions and their impact on the complexation thermodynamics of noble gases with methanol. Phys Chem Chem Phys 2020; 22:17171-17180. [DOI: 10.1039/d0cp01416h] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Abstract
Accurate ab initio calculations provide the reliable information needed to study the potential energy surfaces that control the non-covalent interactions (NCIs) responsible for the formation of weak van der Waals complexes.
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Affiliation(s)
- Lúcio Renan Vieira
- Laboratório de Modelagem de Sistemas Complexos (LMSC)
- Instituto de Química
- Universidade de Brasília
- Brasília
- Brazil
| | - Sandro Francisco de Brito
- Laboratório de Modelagem de Sistemas Complexos (LMSC)
- Instituto de Química
- Universidade de Brasília
- Brasília
- Brazil
| | - Mateus Rodrigues Barbosa
- Laboratório de Modelagem de Sistemas Complexos (LMSC)
- Instituto de Química
- Universidade de Brasília
- Brasília
- Brazil
| | - Thiago Oliveira Lopes
- Laboratório de Modelagem de Sistemas Complexos (LMSC)
- Instituto de Química
- Universidade de Brasília
- Brasília
- Brazil
| | | | - Heibbe Cristhian B. de Oliveira
- Laboratório de Estrutura Eletrônica e Dinâmica Molecular (LEEDMOL)
- Instituto de Química
- Universidade Federal de Goiás
- Goiânia
- Brazil
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Adsorption of carbon dioxide and ammonia in transition metal–doped boron nitride nanotubes. J Mol Model 2019; 25:359. [DOI: 10.1007/s00894-019-4235-9] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2019] [Accepted: 10/15/2019] [Indexed: 10/25/2022]
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8
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CO2 adsorption in nitrogen-doped single-layered graphene quantum dots: a spectroscopic investigation. J Mol Model 2019; 25:66. [DOI: 10.1007/s00894-019-3951-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2018] [Accepted: 01/29/2019] [Indexed: 10/27/2022]
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Lima IT, Gargano R, Guerini S, Paura ENC. A theoretical study of adsorbed non-metallic atoms on magnesium chloride monolayers. NEW J CHEM 2019. [DOI: 10.1039/c9nj01762c] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A detailed study involving non-metallic atoms (boron, nitrogen and carbon atoms) adsorbed on magnesium chloride (MgCl2) monolayers has been performed by density functional theory.
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Affiliation(s)
- Igo T. Lima
- Interdisciplinary Science and Technology
- Federal University of Maranhão
- São Luis
- Brazil
| | | | - Silvete Guerini
- Department of Physics
- Federal University of Maranhão
- São Luis
- Brazil
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Bonfim VS, Borges NM, Martins JBL, Gargano R, Politi JRDS. Quantum Monte Carlo with density matrix: potential energy curve derived properties. J Mol Model 2017; 23:104. [DOI: 10.1007/s00894-017-3272-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2016] [Accepted: 02/06/2017] [Indexed: 11/30/2022]
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Baggio AR, Machado DFS, Carvalho-Silva VH, Paterno LG, de Oliveira HCB. Rovibrational spectroscopic constants of the interaction between ammonia and metallo-phthalocyanines: a theoretical protocol for ammonia sensor design. Phys Chem Chem Phys 2017; 19:10843-10853. [DOI: 10.1039/c6cp07900h] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
We developed an adapted theoretical approach based on DFT calculations (B3LYP) and the nuclear Schrödinger equation using the Discrete Variable Representation method to model the interaction of ammonia with metallo-phthalocyanines.
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Affiliation(s)
- Alan R. Baggio
- Laboratório de Estrutura Eletrônica e Dinâmica Molecular (LEEDMOL)
- Institute of Chemistry
- University of Brasília
- Brasília
- Brazil
| | - Daniel F. S. Machado
- Laboratório de Estrutura Eletrônica e Dinâmica Molecular (LEEDMOL)
- Institute of Chemistry
- University of Brasília
- Brasília
- Brazil
| | - Valter H. Carvalho-Silva
- Grupo de Química Teórica e Estrutural de Anápolis
- Campus de Ciências Exatas e Tecnológicas
- Universidade Estadual de Goiás
- 75001-970 Anápolis
- Brazil
| | - Leonardo G. Paterno
- Laboratório de Pesquisa em Polímeros e Nanomateriais
- Institute of Chemistry
- University of Brasília
- Brasíla
- Brazil
| | - Heibbe Cristhian B. de Oliveira
- Laboratório de Estrutura Eletrônica e Dinâmica Molecular (LEEDMOL)
- Institute of Chemistry
- University of Brasília
- Brasília
- Brazil
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Claudino D, Gargano R, Bartlett RJ. Erratum: “Coupled-cluster based basis sets for valence correlation calculations” [J. Chem. Phys. 144, 104106 (2016)]. J Chem Phys 2016; 145:019901. [DOI: 10.1063/1.4954989] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Affiliation(s)
- Daniel Claudino
- Quantum Theory Project, University of Florida, Gainesville, Florida 32611, USA
| | - Ricardo Gargano
- Instituto de Física, Universidade de Brasília, CP04455, CEP 70919-970 Brasília, DF, Brazil
| | - Rodney J. Bartlett
- Quantum Theory Project, University of Florida, Gainesville, Florida 32611, USA
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13
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Claudino D, Gargano R, Bartlett RJ. Coupled-cluster based basis sets for valence correlation calculations. J Chem Phys 2016; 144:104106. [DOI: 10.1063/1.4943275] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Daniel Claudino
- Quantum Theory Project, University of Florida, Gainesville, Florida 32611, USA
| | - Ricardo Gargano
- Instituto de Física, Universidade de Brasília, CP04455, Brasília, DF, CEP 70919-970, Brazil
| | - Rodney J. Bartlett
- Quantum Theory Project, University of Florida, Gainesville, Florida 32611, USA
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14
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de Lima ÍP, Politi JRDS, Gargano R, Martins JBL. Lateral interaction and spectroscopic constants of CO adsorbed on ZnO. Theor Chem Acc 2015. [DOI: 10.1007/s00214-015-1651-5] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Costa Paura EN, da Cunha WF, Roncaratti LF, Martins JBL, e Silva GM, Gargano R. CO2 adsorption on single-walled boron nitride nanotubes containing vacancy defects. RSC Adv 2015. [DOI: 10.1039/c4ra17336h] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
The adsorption of a CO2 molecule on the vacancy defect type of armchair (5,5) and zigzag (10,0) single-walled boron nitride nanotubes was studied based on Density Functional Theory (DFT).
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Affiliation(s)
| | | | | | | | | | - Ricardo Gargano
- Institute of Physics
- University of Brasilia
- Brazil
- Departments of Chemistry and Physics
- Quantum Theory Project
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Paura ENC, da Cunha WF, Martins JBL, e Silva GM, Roncaratti LF, Gargano R. Carbon dioxide adsorption on doped boron nitride nanotubes. RSC Adv 2014. [DOI: 10.1039/c4ra00432a] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Boron nitride nanotubes are promising structures as far as gas adsorption process is concerned.
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