1
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Singh G, Pandey SP, Singh PK. Guest Binding with Sulfated Cyclodextrins: Does the Size of Cavity Matter? Chemphyschem 2023; 24:e202200421. [PMID: 36228089 DOI: 10.1002/cphc.202200421] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2022] [Revised: 10/01/2022] [Indexed: 01/19/2023]
Abstract
Sulfated cyclodextrins have recently emerged as potential candidates for producing host-induced guest aggregation with properties better than p-sulfonatocalixarenes that have previously shown numerous applications involving the phenomena of host-induced guest aggregation. In the class of sulfated cyclodextrins (SCD), sulfated β-cyclodextrin (β-SCD) remains the most extensively investigated host molecule. Although it is assumed that the host-induced guest aggregation is predominantly an outcome of interaction of the guest molecule with the charges on the exterior of SCD cavity, it has not been deciphered whether the variation in the cavity size will make a difference in the efficiency of host-induced guest-aggregation process. In this investigation, we present a systematic study of host-induced guest aggregation of a cationic molecular rotor dye, Thioflavin T (ThT) with three different sulfated cyclodextrin molecules, α-SCD, β-SCD and γ-SCD, which differ in their cavity size, using steady-state emission, ground-state absorption and time-resolved emission measurements. The obtained photophysical properties of ThT, upon interaction with different SCD molecules, indicate that the binding strength of ThT with different SCD molecules correlate with the cavity size of the host molecule, giving rise to the strongest complexation of ThT with the largest host molecule (γ-SCD). The binding affinity of ThT towards different host molecules has been supported by molecular docking calculations. The results obtained are further supported with the temperature and ionic strength dependent studies performed on the host-guest complex. Our results indicate that for host-induced guest aggregation, involving oppositely charged molecules, the size of the cavity also plays a crucial role beside the charge density on the exterior of host cavity.
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Affiliation(s)
- Gaurav Singh
- Radiation & Photochemistry Division, Bhabha Atomic Research Centre Trombay, Mumbai, 400 085, India
| | - Shrishti P Pandey
- Amity Institute of Biotechnology, Amity University, Mumbai-Pune Expressway, Bhatan Panvel, Mumbai, 410206, India.,Department of Biotechnology, Mithibai College of Arts, Chauhan Institute of Science & Amrutben Jivanlal College of Commerce and Economics, Vile Parle (W), 400056, India
| | - Prabhat K Singh
- Radiation & Photochemistry Division, Bhabha Atomic Research Centre Trombay, Mumbai, 400 085, India.,Homi Bhabha National Institute, Training School Complex, Anushaktinagar, Mumbai, 400 094, India
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2
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Das M, Brandao P, Mati SS, Roy S, Anoop A, James A, De S, Das UK, Laha S, Mondal J, Samanta BC, Maity T. Effect of ancillary ligand on DNA and protein interaction of the two Zn (II) and Co (III) complexes: experimental and theoretical study. J Biomol Struct Dyn 2022; 40:14188-14203. [PMID: 34842505 DOI: 10.1080/07391102.2021.2001377] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
In the present work we have developed one mononuclear Zn(II) complex [Zn(L)(H2O)] (Complex 1) by utilizing a tetracoordinated ligand H2L, formed by simple condensation of 2, 2 dimethyl 1,3 diamino propane and 3- ethoxy salicylaldehyde and one newly designed mononuclear Co (III) complex [Co(L)(L1)] (complex 2) by utilizing (H2L) and 3- ethoxy salicylaldehyde(HL1) as an ancillary ligand. The newly developed complex 2 have been spectroscopically characterized. An interesting phenomenon has been noticed that in presence of ancillary ligand, the solubility in buffer solution and the thermal stability of complex 2 comparatively increases than 1. To check the effect of ancillary ligand, present in complex 2 towards the DNA and HSA binding efficacy, both the complexes have been taken into consideration to inspect their binding potentiality with the macromolecules. The 'on', 'off' fluorescence changes in presence of DNA and HSA, the binding constant values, obtained from electronic spectral titration, iodide induced quenching, competitive binding assay, circular dichroism (CD) spectral titration, time resolved fluorescence experiment unambiguously assure the better binding efficacy of complex 2 with the signal of minor groove binding mode with DNA along with no significant conformational changes of the macromolecules. The strong and spontaneous binding of complex 2 with CT-DNA is further supported by the Isothermal Titration Calorimetry (ITC) study. Furthermore TDDFT calculation of DNA with and without complex 2 significantly authorize the formation of complex 2-DNA adduct during the association. Finally Molecular Docking study properly verifies the experimental findings and provides justified explanation behinds experimental findings.
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Affiliation(s)
- Manik Das
- Department of Chemistry, P. K. College, Contai, India
| | - Paola Brandao
- Departamento de Química/CICEC, Universidade de Aveiro, Aveiro, Portugal
| | - Soumya Sundar Mati
- Department of Chemistry, Government General Degree College, Keshiary, India
| | - Saikat Roy
- Department of Chemistry, IIT Kharagpur, Kharagpur, India
| | | | - Anjima James
- Department of Applied Chemistry, Cochin University of Science and Technology, Cochin, India
| | - Susmita De
- Department of Applied Chemistry, Cochin University of Science and Technology, Cochin, India
| | - Uttam Kumar Das
- Department of Chemistry, School of Physical sciences, Mahatma Gandhi Central University, Motihari, India
| | - Soumik Laha
- Indian Institute of Chemical Biology CSIR, Kolkata, India
| | - Jisu Mondal
- Indian Institute of Chemical Biology CSIR, Kolkata, India
| | | | - Tithi Maity
- Department of Chemistry, P. K. College, Contai, India
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3
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Ghosh R, Singh S, Mukherjee D, Mondal S, Das M, Pal U, Adhikari A, Bhushan A, Bose S, Bhattacharyya SS, Pal D, Saha-Dasgupta T, Bhattacharyya M, Bhattacharyya D, Mallick AK, Das R, Pal SK. Host-assisted delivery of a model drug to genomic DNA: Key information from ultrafast spectroscopy and in silico study. Chembiochem 2022; 23:e202200109. [PMID: 35225409 DOI: 10.1002/cbic.202200109] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2022] [Indexed: 11/10/2022]
Abstract
Intended drug delivery to a target without adverse effect is one of the major criteria for its acceptance in real use. Herein, we have made an attempt to explore the delivery efficacy of SDS surfactant in a monomer and micellar stage during the delivery of model drug, Toluidine Blue (TB) from micellar cavity to DNA. Molecular recognition of pre-micellar SDS encapsulated TB with DNA occurs at a rate constant (k1~652 s-1). On the contrary, no significant release of encapsulated TB at micellar concentration was observed within the experimental time frame. This originated from the higher binding affinity of TB towards the nano cavity of SDS at micellar concentration which doesn't allow the delivery of TB from the nano cavity of SDS micelle to DNA. Thus, molecular recognition controls the extent of DNA recognition by TB which in turn modulates the rate of delivery of TB from SDS in a concentration dependent morphology.
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Affiliation(s)
- Ria Ghosh
- S N Bose National Centre for Basic Sciences, CBMS, Block JD, Sector 3, Salt lake,, 700106, Kolkata, INDIA
| | - Soumendra Singh
- S N Bose National Centre for Basic Sciences, Technical Research Centre, Block JD, Sector 3, Salt Lake, 700106, Kolkata, INDIA
| | - Dipanjan Mukherjee
- S N Bose National Centre for Basic Sciences, CBMS, Block JD, Sector 3, Salt lake, 700106, Kolkata, INDIA
| | - Susmita Mondal
- S N Bose National Centre for Basic Sciences, CBMS, Block JD, Sector 3, Salt lake, 700106, Kolkata, INDIA
| | - Monojit Das
- Vidyasagar University, Zoology, 7221102, Midnapore, INDIA
| | - Uttam Pal
- S N Bose National Centre for Basic Sciences, Technical Research Centre, Block JD, Sector 3, Salt Lake, 700106, Kolkata, INDIA
| | - Aniruddha Adhikari
- S N Bose National Centre for Basic Sciences, CBMS, Block JD, Sector 3, Salt lake, 700106, Kolkata, INDIA
| | - Aman Bhushan
- Thapar University: Thapar Institute of Engineering and Technology, Biotechnology, Bhadson Road, Patiala, Punjab, 147004, Patiala, INDIA
| | - Surajit Bose
- KSDJ Dental College and Hospital, Oral and Maxillofacial Pathology, 700002, Kolkata, INDIA
| | | | - Debasish Pal
- Uluberia College, Zoology, 711315, Howrah, INDIA
| | - Tanusri Saha-Dasgupta
- S N Bose National Centre for Basic Sciences, CMPS, Block JD, Sector 3, Salt Lake, 700106, Kolkata, INDIA
| | - Maitree Bhattacharyya
- University of Calcutta, Biochemistry, 35, Ballygunge Circular Rd, Ballygunge, 700019, Kolkata, INDIA
| | - Debasis Bhattacharyya
- Nilratan Sircar Medical College and Hospital, Gynecology and Obstetrics, 138, AJC Bose Road, Sealdah, Raja Bazar,, 700014, Kolkata, INDIA
| | - Asim Kumar Mallick
- Nilratan Sircar Medical College and Hospital, Pediatric Medicine, 138, AJC Bose Road, Sealdah, Raja Bazar, 700014, Kolkata, INDIA
| | - Ranjan Das
- West Bengal State University, Chemistry, 700126, Kolkata, INDIA
| | - Samir Kumar Pal
- SNBNCBS, CBMS, Block JD, Sector III, Salt Lake City, 700098, Kolkata, INDIA
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4
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Zeng G, Chen F, Lei Y, Zhou L, Yang X, Guo H, Tuo X, Guo Y. Revealing the binding properties between resorcinol and DNA. LUMINESCENCE 2021; 37:4-13. [PMID: 34499419 DOI: 10.1002/bio.4140] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2021] [Revised: 08/12/2021] [Accepted: 09/06/2021] [Indexed: 01/08/2023]
Abstract
Resorcinol (1,3-dihydroxybenzene) is a common coupling agent in permanent hair dyes, and has arrested people's attention for its potential hazard to human health. However, the action mechanism of resorcinol and human DNA has not been elucidated. In this research, the binding properties between resorcinol and calf thymus DNA (ct-DNA) were studied for the first time through various spectral and molecular docking techniques. Spectral studies showed that the initial fluorescence quenching of resorcinol against DNA was a static one. The result of ΔH < 0 and ΔS > 0 was produced from thermodynamic experimental data, therefore it could be concluded that electrostatic force was the major driving force, while binding constant Kb was 1.56 × 104 M-1 at 298 K. The electrostatic binding network between resorcinol and ct-DNA was established explicitly through competitive substitution analysis and other spectral approaches. The results of FT-IR absorption spectra indicated that resorcinol had bound to the DNA phosphate skeleton. Molecular docking clearly revealed that binding occurred between hydroxyl groups of resorcinol and phosphorus oxygen bonds (P-O) of the DNA skeleton. These findings may deepen our understanding of the action mechanism between resorcinol and ct-DNA and provide some useful data on the effect of resorcinol on human diseases.
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Affiliation(s)
- Guofang Zeng
- College of Chemistry, Nanchang University, Nanchang, Jiangxi, China
| | - Fengping Chen
- School of Pharmacy, Nanchang University, Nanchang, Jiangxi, China
| | - Yating Lei
- School of Pharmacy, Nanchang University, Nanchang, Jiangxi, China
| | - Like Zhou
- College of Chemistry, Nanchang University, Nanchang, Jiangxi, China
| | - Xi Yang
- School of Pharmacy, Nanchang University, Nanchang, Jiangxi, China
| | - Hui Guo
- College of Chemistry, Nanchang University, Nanchang, Jiangxi, China
| | - Xun Tuo
- College of Chemistry, Nanchang University, Nanchang, Jiangxi, China
| | - Ying Guo
- College of Chemistry, Nanchang University, Nanchang, Jiangxi, China
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5
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Pandey SP, Awasthi AA, Singh PK. Supramolecular tuning of thioflavin-T aggregation hosted by polystyrene sulfonate. Phys Chem Chem Phys 2021; 23:14716-14724. [PMID: 34190258 DOI: 10.1039/d1cp02030g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Tunable and controllable emission is an extremely desirable feature for advanced functional materials that finds usage in optoelectronic utilization, fluorescence probing/sensing, drug-delivery monitoring, etc. In the present contribution, we have employed a macrocyclic host molecule, sulfobutyl ether-β-cyclodextrin (SBE-β-CD), as a tuning agent for an intensely emissive aggregate assembly of a molecular rotor dye, thioflavin-T (ThT), in the presence of an anionic polyelectrolyte, polystyrene sulfonate (PSS). The macrocyclic host breaks the PSS templated ThT aggregates and leads to encapsulation of released ThT molecules, tailoring the emission response of the system in terms of intensity and wavelength. Utilizing the established selectivity of the cyclodextrin-adamantane system, reverse control of this tunable emission has been further achieved. The controllable fluorescence system has been extensively investigated using ground-state absorption, steady-state and time-resolved emission spectroscopy. This kind of supramolecular tailoring of self-assembled aggregate emission has enormous potential in the field of fluorescence sensors and probes, and imaging and tracking in biological systems.
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Affiliation(s)
- Shrishti P Pandey
- Amity Institute of Biotechnology, Amity University, Mumbai-Pune Expressway, Bhatan, Panvel, Mumbai, 410206, India and Radiation & Photochemistry Division, Bhabha Atomic Research Centre, Mumbai 400 085, India.
| | - Ankur A Awasthi
- Radiation & Photochemistry Division, Bhabha Atomic Research Centre, Mumbai 400 085, India.
| | - Prabhat K Singh
- Radiation & Photochemistry Division, Bhabha Atomic Research Centre, Mumbai 400 085, India. and Homi Bhabha National Institute, Anushaktinagar, Mumbai-400085, India
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6
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Hanczyc P, Rajchel-Mieldzioć P, Feng B, Fita P. Identification of Thioflavin T Binding Modes to DNA: A Structure-Specific Molecular Probe for Lasing Applications. J Phys Chem Lett 2021; 12:5436-5442. [PMID: 34080857 PMCID: PMC8280760 DOI: 10.1021/acs.jpclett.1c01254] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2021] [Accepted: 05/24/2021] [Indexed: 05/17/2023]
Abstract
The binding mechanism of thioflavin T (ThT) to DNA was studied using polarized light spectroscopy and fluorescence-based techniques in solutions and in solid films. Linear dichroism measurements showed that ThT binds to DNA duplex by intercalation. Time-resolved fluorescence studies revealed a second binding mode which is the external binding to the DNA phosphate groups. Both binding modes represent the nonspecific type of interactions. The studies were complemented with the analysis of short oligonucleotides having DNA cavities. The results indicate that the interplay between three binding modes-intercalation, external binding, and binding inside DNA cavities-determines the effective fluorescence quantum yield of the dye in the DNA structures. External binding was found to be responsible for fluorescence quenching because of energy transfer between intercalated and externally bound molecules. Finally, amplified spontaneous emission (ASE) was successfully generated in the ThT-stained films and used for detecting different DNA structures. ASE measurements show that ThT-stained DNA structures can be used for designing bioderived microlasers.
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Affiliation(s)
- P. Hanczyc
- Institute
of Experimental Physics, Faculty of Physics, University of Warsaw, Pasteura 5, 02-093 Warsaw, Poland
| | - P. Rajchel-Mieldzioć
- Institute
of Experimental Physics, Faculty of Physics, University of Warsaw, Pasteura 5, 02-093 Warsaw, Poland
| | - B. Feng
- Department
of Chemistry and Chemical Engineering, Chalmers
University of Technology, 412 96 Gothenburg, Sweden
| | - P. Fita
- Institute
of Experimental Physics, Faculty of Physics, University of Warsaw, Pasteura 5, 02-093 Warsaw, Poland
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7
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Awasthi AA, Pandey SP, Singh PK. Supramolecular Control on the Optical Properties of a Dye-Polyelectrolyte Assembly. Chemphyschem 2021; 22:975-984. [PMID: 33759328 DOI: 10.1002/cphc.202100092] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2021] [Revised: 03/17/2021] [Indexed: 12/16/2022]
Abstract
Control of fluorescent molecular assemblies is an exciting area of research with large potential for various important applications, such as, fluorescence sensing/probing, cell imaging and monitoring drug-delivery. In the present contribution, we have demonstrated control on the extent of aggregation of a dye-polyelectrolyte assembly using a macrocyclic host molecule, sulfobutylether-β-cyclodextrin (SBE-β-CD). Initially, a cationic molecular rotor based organic dye, Auramine-O (AuO), undergoes aggregation in the presence of an anionic polyelectrolyte, polystyrene sulfonate (PSS), and displays a broad intense new emission band along with large variation in its absorption features and excited-state lifetime. A manipulation of the monomer-aggregate equilibrium of the dye-polyelectrolyte assembly has been achieved by introducing a cyclodextrin based supramolecular host, SBE-β-CD, which leads to relocation of AuO molecules from polyelectrolyte (PSS) to supramolecular host cavity, owing to the formation of a host-guest complex between AuO and SBE-β-CD. A reversible control on this manipulation of monomer-aggregate equilibrium is further achieved by introducing a competitive guest for the host cavity i. e., 1-Adamantanol. Thus, we have demonstrated an interesting control on the dye-polyelectrolyte aggregate assembly using a supramolecular host molecule which open up exciting possibilities to construct responsive materials using a repertoire of various host-specific guest molecules.
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Affiliation(s)
- Ankur A Awasthi
- Radiation & Photochemistry Division, Bhabha Atomic Research Centre, Trombay, Mumbai-400 085, India
| | - Shrishti P Pandey
- Amity Institute of Biotechnology, Amity University, Mumbai-Pune Expressway, Bhatan, Panvel, Mumbai, 410206, India
| | - Prabhat K Singh
- Radiation & Photochemistry Division, Bhabha Atomic Research Centre, Trombay, Mumbai-400 085, India.,Homi Bhabha National Institute, Training School Complex, Anushaktinagar, Mumbai-400 094, India
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8
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Desai AM, Pandey SP, Singh PK. Effect of counter-anions on the aggregation of Thioflavin-T. Phys Chem Chem Phys 2021; 23:9948-9961. [PMID: 33861224 DOI: 10.1039/d1cp00193k] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
The aggregation of small molecules in aqueous solution is known to be influenced by the ionic strength of the medium; however, the role played by the identity of salt in the phenomenon of small molecule aggregation is rarely investigated. In the present contribution, we have investigated the effect of counter-anions on the aggregation of a popular cationic amyloid sensing probe, Thioflavin-T (ThT), by taking six different anions, viz. chloride, bromide, acetate, iodide, tetrafluoroborate, and perchlorate. Our results clearly indicate that it is not the ionic strength of the medium which solely controls aggregation of small molecules but distinct ions behave distinctly with regard to the organization. In fact, distinct ion effects play a major role in the salt induced organization of fluorophores. Using detailed steady-state emission, time-resolved emission, and ground-state absorption measurements, the optical properties of salt induced aggregates of ThT have been characterized. We have rationalized our observations on the basis of the theory of matching water affinity, which suggests that the matching free hydration energy is a critical aspect for the formation of contact ion pairs, which eventually results in aggregation. In brief, a larger sized anion, perchlorate, has a lower free energy of hydration and forms a suitable contact ion pair, with a larger organic cation, ThT, having weaker hydration. This contact ion-pair formation subsequently leads to the formation of an aggregate assembly which is found to be emissive in nature. Therefore, it is possible to induce aggregation of ThT by selecting the right counterion with the appropriate size, which may help us to evaluate the false positive signals when high ionic strength and specific counterions are present in the sensing matrix.
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Affiliation(s)
- Akshat M Desai
- Radiation & Photochemistry Division, Bhabha Atomic Research Centre, Trombay, Mumbai 400 085, India.
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9
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10
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Ipte P, Sharma A, Pal H, Satpati A. Probing the interaction of ciprofloxacin with dsDNA: Electrochemical, spectro-electrochemical and AFM investigation. J Electroanal Chem (Lausanne) 2021. [DOI: 10.1016/j.jelechem.2021.115098] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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11
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Dual-dye systems comprising activatable fluorescein dye and hydrophobic or hydrophilic Cy5 reference fluorophore for ratiometric drug delivery monitoring. J Photochem Photobiol A Chem 2021. [DOI: 10.1016/j.jphotochem.2020.113113] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
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12
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Wang X, Zhi W, Ma C, Zhu Z, Qi W, Huang J, Yan Y. Not by Serendipity: Rationally Designed Reversible Temperature-Responsive Circularly Polarized Luminescence Inversion by Coupling Two Scenarios of Harata-Kodaka's Rule. JACS AU 2021; 1:156-163. [PMID: 34467281 PMCID: PMC8395654 DOI: 10.1021/jacsau.0c00061] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/23/2020] [Indexed: 05/13/2023]
Abstract
Intelligent control over the handedness of circularly polarized luminescence (CPL) is of special significance in smart optoelectronics, information storage, and data encryption; however, it still remains a great challenge to rationally design a CPL material that displays reversible handedness inversion without changing the system composition. Herein, we show this comes true by coupling the two scenarios of Harata-Kodaka's rule on the same supramolecular platform of crystalline microtubes self-assembled from surfactant-cyclodextrin host-guest complexes. Upon coassembling a linear dye with its electronic transition dipole moment outside of the cavity of β-CyD, the chirality transfer from the induced chirality of SDS in the SDS@2β-CyD microtubes to the dye generates left-handed CPL at room temperature. Upon elevating temperature, the dye forms inclusion complex with β-CyD, so that right-handed CPL is induced because the polar group of the dye is outside of the cavity of β-CyD. This process is completely reversible. We envision that host-guest chemistry would be very promising in creating smart CPL inversion materials for a vast number of applications.
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13
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An anionic polyelectrolyte induced aggregate assembly of Thioflavin-T: A prospective platform for Protamine sensing. Int J Biol Macromol 2020; 164:1174-1182. [PMID: 32710965 DOI: 10.1016/j.ijbiomac.2020.07.182] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2020] [Revised: 07/08/2020] [Accepted: 07/16/2020] [Indexed: 12/23/2022]
Abstract
Protamine, a polycation, is biologically and medically relevant protein. Protamine exhibits a wide array of functions in biological processes like gene transfer, tissue and organogenesis, cell reproduction, etc. Medically, Protamine is the only clinically approved antidote for Heparin and is routinely used in various surgical interventions, and hence controlling Protamine dosing in patients is very crucial. Taking into account the medical significance of Protamine, designing simple, reliable and sensitive fluorescence sensors is highly desirable. In this work, we propose one such sensitive and reliable fluorescent sensor which is based on a template of dye-polyelectrolyte assembly constituting a molecular rotor dye, Thioflavin-T and an anionic synthetic polyelectrolyte, polystyrene sulfonate. The addition of Protamine, prompts drastic modulations in spectral features of dye-polyelectrolyte assembly which enables sensitive detection of Protamine in aqueous solution. Apart from sensitive detection, our sensing platform aids in highly selective sensing of Protamine compared to other proteins. Moreover, our sensor system is constructed on label-free, inexpensive, commercially available molecules posing as an advantage over other sensor systems which involve laborious synthesis protocols. Most importantly, our sensor template is able to sense Protamine in diluted serum sample, indicating the potential practical utility of our sensor system.
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14
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Singh VR, Singh PK. A supramolecule based fluorescence turn-on and ratiometric sensor for ATP in aqueous solution. J Mater Chem B 2020; 8:1182-1190. [PMID: 31957759 DOI: 10.1039/c9tb02403d] [Citation(s) in RCA: 33] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
Considering the biological relevance of adenosine triphosphate (ATP) as an "energy currency" in all organisms and significance of its detection in various diseased conditions, enormous efforts have been made to develop selective and sensitive fluorescent sensors for the detection of ATP. However, these developed sensor probes frequently involve technically challenging and time-consuming synthetic protocols for the production of sensor molecules and often suffer from poor solubility in aqueous medium. Another major disadvantage of these developed sensor systems is their single wavelength based operation which makes their performance susceptible to minute changes in experimental conditions. Herein, we report a fluorescence turn-on ratiometric sensor for the detection of ATP which operates by the dissociation of Thioflavin-T-sulphated-β-cyclodextrin supramolecular assembly by Zn2+ followed by ATP induced reassociation of the same. This modulation of the monomer/aggregate equilibrium of the supramolecular assembly followed by subsequent interactions with Zn2+ and ATP acts as an optimal scheme for the ratiometric detection of ATP. Overall this supramolecular ensemble based sensing platform provides a simple, sensitive, selective and label free detection approach for ATP in aqueous solution. Importantly, our sensor platform responds to ATP in the biologically complex media of serum samples suggesting its potential for possible applications in real-life scenarios.
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Affiliation(s)
- Vidya R Singh
- Radiation & Photochemistry Division, Bhabha Atomic Research Centre, Mumbai-400085, Maharashtra, India.
| | - Prabhat K Singh
- Radiation & Photochemistry Division, Bhabha Atomic Research Centre, Mumbai-400085, Maharashtra, India.
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15
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Kundu P, Das S, Chattopadhyay N. Managing efficacy and toxicity of drugs: Targeted delivery and excretion. Int J Pharm 2019; 565:378-390. [DOI: 10.1016/j.ijpharm.2019.04.058] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2019] [Revised: 04/17/2019] [Accepted: 04/19/2019] [Indexed: 01/03/2023]
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16
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Time-resolved fluorescence microscopy (FLIM) as an analytical tool in skin nanomedicine. Eur J Pharm Biopharm 2017; 116:111-124. [DOI: 10.1016/j.ejpb.2017.01.005] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2016] [Revised: 01/09/2017] [Accepted: 01/19/2017] [Indexed: 12/22/2022]
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17
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Awasthi AA, Singh PK. Stimulus-Responsive Supramolecular Aggregate Assembly of Auramine O Templated by Sulfated Cyclodextrin. J Phys Chem B 2017; 121:6208-6219. [DOI: 10.1021/acs.jpcb.7b03592] [Citation(s) in RCA: 41] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Affiliation(s)
- Ankur A. Awasthi
- Radiation & Photochemistry Division, Bhabha Atomic Research Centre, Mumbai 400 085, India
| | - Prabhat K. Singh
- Radiation & Photochemistry Division, Bhabha Atomic Research Centre, Mumbai 400 085, India
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18
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Afzal M, Kundu P, Das S, Ghosh S, Chattopadhyay N. A promising strategy for improved solubilization of ionic drugs simply by electrostatic pushing. RSC Adv 2017. [DOI: 10.1039/c7ra08056e] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Addition of soluble salts to the SDS-bound phenosafranin induces electrostatic pushing of the probe within the micellar interior from its initial location at the micelle–water interface.
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Affiliation(s)
- Mohd Afzal
- Department of Chemistry
- Jadavpur University
- Kolkata-700032
- India
| | - Pronab Kundu
- Department of Chemistry
- Jadavpur University
- Kolkata-700032
- India
| | - Sinjan Das
- Department of Chemistry
- Jadavpur University
- Kolkata-700032
- India
| | - Saptarshi Ghosh
- Department of Chemistry
- Jadavpur University
- Kolkata-700032
- India
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19
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Mudliar NH, Pettiwala AM, Awasthi AA, Singh PK. On the Molecular Form of Amyloid Marker, Auramine O, in Human Insulin Fibrils. J Phys Chem B 2016; 120:12474-12485. [PMID: 27973839 DOI: 10.1021/acs.jpcb.6b10078] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
Designing extrinsic fluorescence sensors for amyloid fibrils is a very active and important area of research. Recently, an ultrafast molecule rotor dye, Auramine O (AuO), has been projected as a fluorescent amyloid marker. It has been claimed that AuO scores better than the most extensively utilized gold-standard amyloid probe, Thioflavin-T (ThT). This advantage arises from the fact that AuO, in addition to its usual emission band (∼500 nm), also displays a large red-shifted emission band (∼560 nm), exclusively in the presence of human insulin fibril medium and not in the native protein or buffer media. On the contrary, for ThT, the emission maximum (∼490 nm) largely remains unchanged while going from protein to fibril. This otherwise unknown large red-shifted emission band of AuO, observed in the presence of human insulin fibrils, was tentatively attributed to a species formed upon fast proton dissociation from excited AuO. It was proposed that because of the long excited-state lifetime (∼1.8 ns) of AuO upon association with human insulin fibrils, this fast proton dissociation from excited AuO could be observed, which is otherwise not observed in buffer or native protein media, owing to its very short excited-state lifetime (∼1 ps). Herein, we show that despite the long excited-state lifetime of AuO in other fibrillar media (human serum albumin and lysozyme), the new red-shifted emission band at 560 nm is not observed, thus possibly suggesting a different origin of the red-shifted emission band of AuO in human insulin fibril medium. We convincingly show that this red-shifted band of AuO (∼560 nm) could be observed under conditions that promote dye aggregation, such as a premicellar concentration of surfactants and polyelectrolytes. These AuO aggregates display strong emission wavelength dependence of transient decay traces, similar to that for AuO in human insulin fibril medium. Detailed time-resolved emission spectral (TRES) measurements suggest that the AuO/premicellar surfactant and AuO/human insulin fibril system share similar features, such as a dynamic red-shift in TRES and an isoemissive point in the time-resolved area-normalized emission spectra, suggesting that the characteristic red-shifted emission band of AuO in human insulin fibril medium may arise from AuO aggregates.
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Affiliation(s)
- Niyati H Mudliar
- Radiation & Photochemistry Division, Bhabha Atomic Research Centre , Mumbai 400 085, India
| | - Aafrin M Pettiwala
- Radiation & Photochemistry Division, Bhabha Atomic Research Centre , Mumbai 400 085, India
| | - Ankur A Awasthi
- Radiation & Photochemistry Division, Bhabha Atomic Research Centre , Mumbai 400 085, India
| | - Prabhat K Singh
- Radiation & Photochemistry Division, Bhabha Atomic Research Centre , Mumbai 400 085, India
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20
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Mudliar NH, Singh PK. Emissive H-Aggregates of an Ultrafast Molecular Rotor: A Promising Platform for Sensing Heparin. ACS APPLIED MATERIALS & INTERFACES 2016; 8:31505-31509. [PMID: 27933968 DOI: 10.1021/acsami.6b12729] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Constructing "turn on" fluorescent probes for heparin, a most widely used anticoagulant in clinics, from commercially available materials is of great importance, but remains challenging. Here, we report the formation of a rarely observed emissive H-aggregate of an ultrafast molecular rotor dye, Thioflavin-T, in the presence of heparin, which provides an excellent platform for simple, economic and rapid fluorescence turn-on sensing of heparin. Generally, H-aggregates are considered as serious problem in the field of biomolecular sensing, owing to their poorly emissive nature resulting from excitonic interaction. To the best of our knowledge, this is the first report, where contrastingly, the turn-on emission from the H-aggregates has been utilized in the biomolecule sensing scheme, and enables a very efficient and selective detection of a vital biomolecule and a drug with its extensive medical applications, i.e., heparin. Our sensor system offers several advantages including, emission in the biologically advantageous red-region, dual sensing, i.e., both by fluorimetry and colorimetry, and most importantly constructed from in-expensive commercially available dye molecule, which is expected to impart a large impact on the sensing field of heparin. Our system displays good performance in complex biological media of serum samples. The novel Thioflavin-T aggregate emission could be also used to probe the interaction of heparin with its only clinically approved antidote, Protamine.
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Affiliation(s)
- Niyati H Mudliar
- Radiation & Photochemistry Division, Bhabha Atomic Research Centre , Mumbai 400 085, India
| | - Prabhat K Singh
- Radiation & Photochemistry Division, Bhabha Atomic Research Centre , Mumbai 400 085, India
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21
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Afzal M, Ghosh S, Das S, Chattopadhyay N. Endogenous Activation-Induced Delivery of a Bioactive Photosensitizer from a Micellar Carrier to Natural DNA. J Phys Chem B 2016; 120:11492-11501. [DOI: 10.1021/acs.jpcb.6b08283] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Affiliation(s)
- Mohd Afzal
- Department of Chemistry, Jadavpur University, Kolkata 700032, India
| | - Saptarshi Ghosh
- Department of Chemistry, Jadavpur University, Kolkata 700032, India
| | - Sinjan Das
- Department of Chemistry, Jadavpur University, Kolkata 700032, India
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22
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Relocation of a biological photosensitizer from non-ionic micellar carrier to DNA: A multispectroscopic investigation. Biophys Chem 2016; 219:75-81. [PMID: 27794262 DOI: 10.1016/j.bpc.2016.10.003] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2016] [Revised: 10/20/2016] [Accepted: 10/20/2016] [Indexed: 12/24/2022]
Abstract
Relocation of a bioactive photosensitizer, namely phenosafranin (PSF), from the phenazinium family, has been demonstrated from non-ionic micellar carrier to the DNA. For the purpose, interaction of micelle-bound PSF with calf thymus DNA (ctDNA) has been investigated vividly exploiting various spectroscopic techniques like absorption, steady state and time resolved emission, fluorescence anisotropy, circular dichroism etc. Experimental outcomes reveal that PSF binds strongly with both the micelle as well as the DNA. In the presence of DNA, however, relocation of the micelle-carried PSF occurs from the micelle to the DNA. Competitive binding of the probe between micelle and the DNA is assigned responsible for this relocation. Circular dichroism spectral measurements reflect that the DNA conformation remains intact in the presence of the micelle advocating that the non-ionic micelles can safely be used for the drug delivery purpose. The work is expected to encourage development of newer carriers for DNA targeted drug delivery.
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23
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Mudliar NH, Sadhu B, Pettiwala AM, Singh PK. Evaluation of an Ultrafast Molecular Rotor, Auramine O, as a Fluorescent Amyloid Marker. J Phys Chem B 2016; 120:10496-10507. [DOI: 10.1021/acs.jpcb.6b07807] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- Niyati H. Mudliar
- Radiation & Photochemistry Division, ‡Radiation Safety Systems Division, Bhabha Atomic Research Centre, Mumbai 400085, India
| | - Biswajit Sadhu
- Radiation & Photochemistry Division, ‡Radiation Safety Systems Division, Bhabha Atomic Research Centre, Mumbai 400085, India
| | - Aafrin M. Pettiwala
- Radiation & Photochemistry Division, ‡Radiation Safety Systems Division, Bhabha Atomic Research Centre, Mumbai 400085, India
| | - Prabhat K. Singh
- Radiation & Photochemistry Division, ‡Radiation Safety Systems Division, Bhabha Atomic Research Centre, Mumbai 400085, India
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24
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Mudliar NH, Singh PK. Fluorescent H‐Aggregates Hosted by a Charged Cyclodextrin Cavity. Chemistry 2016; 22:7394-8. [DOI: 10.1002/chem.201600925] [Citation(s) in RCA: 52] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2016] [Indexed: 01/02/2023]
Affiliation(s)
- Niyati H. Mudliar
- Radiation & Photochemistry Division Bhabha Atomic Research Centre, Trombay Mumbai 400 085 India
- School of Science Narsee Monjee Institute of Management Studies Mumbai 400056 India
| | - Prabhat K. Singh
- Radiation & Photochemistry Division Bhabha Atomic Research Centre, Trombay Mumbai 400 085 India
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25
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Singh PK, Mora AK, Nath S. Free volume dependence of an ionic molecular rotor in Fluoroalkylphosphate (FAP) based ionic liquids. Chem Phys Lett 2016. [DOI: 10.1016/j.cplett.2015.12.016] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
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26
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Kundu P, Ghosh S, Das S, Chattopadhyay N. Cyclodextrin induced controlled delivery of a biological photosensitizer from a nanocarrier to DNA. Phys Chem Chem Phys 2016; 18:3685-93. [DOI: 10.1039/c5cp06174a] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Abstract
Addition of β-cyclodextrin to the micelle bound phenosafranin in the presence of ctDNA leads to quantitative transfer of the fluorophore from the micelle to the DNA.
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Affiliation(s)
- Pronab Kundu
- Department of Chemistry
- Jadavpur University
- Kolkata-700032
- India
| | - Saptarshi Ghosh
- Department of Chemistry
- Jadavpur University
- Kolkata-700032
- India
| | - Sinjan Das
- Department of Chemistry
- Jadavpur University
- Kolkata-700032
- India
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27
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Ghosh S, Kundu P, Chattopadhyay N. DNA induced sequestration of a bioactive cationic fluorophore from the lipid environment: A spectroscopic investigation. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY 2016; 154:118-25. [DOI: 10.1016/j.jphotobiol.2015.11.001] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/06/2015] [Revised: 10/29/2015] [Accepted: 11/01/2015] [Indexed: 12/28/2022]
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28
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Lee IJ, Patil SP, Fhayli K, Alsaiari S, Khashab NM. Probing structural changes of self assembled i-motif DNA. Chem Commun (Camb) 2015; 51:3747-9. [PMID: 25350559 DOI: 10.1039/c4cc06824f] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
We report an i-motif structural probing system based on Thioflavin T (ThT) as a fluorescent sensor. This probe can discriminate the structural changes of RET and Rb i-motif sequences according to pH change.
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Affiliation(s)
- Il Joon Lee
- Controlled Release and Delivery Lab (CRD), Advanced Membranes and Porous Materials Center, King Abdullah University of Science and Technology (KAUST), Thuwal, Makkah 23955-6900, Kingdom of Saudi Arabia.
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29
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Singh PK, Mora AK, Nath S. Ultrafast Torsional Relaxation of Thioflavin-T in Tris(pentafluoroethyl)trifluorophosphate (FAP) Anion-Based Ionic Liquids. J Phys Chem B 2015; 119:14252-60. [DOI: 10.1021/acs.jpcb.5b09028] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Affiliation(s)
- Prabhat K. Singh
- Radiation & Photochemistry Division, Bhabha Atomic Research Centre, Mumbai 400 085, India
| | - Aruna K. Mora
- Radiation & Photochemistry Division, Bhabha Atomic Research Centre, Mumbai 400 085, India
| | - Sukhendu Nath
- Radiation & Photochemistry Division, Bhabha Atomic Research Centre, Mumbai 400 085, India
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30
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Singh PK, Murudkar S, Mora AK, Nath S. Ultrafast torsional dynamics of Thioflavin-T in an anionic cyclodextrin cavity. J Photochem Photobiol A Chem 2015. [DOI: 10.1016/j.jphotochem.2014.10.007] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
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31
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Murudkar S, Mora AK, Singh PK, Bandyopadhyay T, Nath S. An ultrafast molecular rotor based ternary complex in a nanocavity: a potential “turn on” fluorescence sensor for the hydrocarbon chain. Phys Chem Chem Phys 2015; 17:5691-703. [DOI: 10.1039/c4cp04636f] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
Formation of a ternary complex by an ultrafast molecular rotor (UMR) with a macrocyclic cavitand has been investigated for the sensitive detection of the alkyl chain of a surfactant.
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Affiliation(s)
- Sushant Murudkar
- Radiation & Photochemistry Division
- Bhabha Atomic Research Centre
- Mumbai 400 085
- India
| | - Aruna K. Mora
- Radiation & Photochemistry Division
- Bhabha Atomic Research Centre
- Mumbai 400 085
- India
| | - Prabhat K. Singh
- Radiation & Photochemistry Division
- Bhabha Atomic Research Centre
- Mumbai 400 085
- India
| | - Tusar Bandyopadhyay
- Theoretical Chemistry Section
- Bhabha Atomic Research Centre
- Mumbai 400 085
- India
| | - Sukhendu Nath
- Radiation & Photochemistry Division
- Bhabha Atomic Research Centre
- Mumbai 400 085
- India
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32
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Sayed M, Pal H. pH-Assisted control over the binding and relocation of an acridine guest between a macrocyclic nanocarrier and natural DNA. Phys Chem Chem Phys 2015; 17:9519-32. [DOI: 10.1039/c4cp05335d] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Abstract
Controlled binding and relocation of a dye–drug between a macrocyclic nanocarrier and natural DNA is demonstrated using pH as a stimulus.
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Affiliation(s)
- Mhejabeen Sayed
- Radiation & Photochemistry Division
- Bhabha Atomic Research Centre
- Mumbai 400 085
- India
| | - Haridas Pal
- Radiation & Photochemistry Division
- Bhabha Atomic Research Centre
- Mumbai 400 085
- India
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33
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Murudkar S, Mora AK, Jakka S, Singh PK, Nath S. Ultrafast molecular rotor based DNA sensor: An insight into the mode of interaction. J Photochem Photobiol A Chem 2014. [DOI: 10.1016/j.jphotochem.2014.08.012] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
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34
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Ghosh S, Banik D, Roy A, Kundu N, Kuchlyan J, Sarkar N. Spectroscopic investigation of the binding interactions of a membrane potential molecule in various supramolecular confined environments: contrasting behavior of surfactant molecules in relocation or release of the probe between nanocarriers and DNA surface. Phys Chem Chem Phys 2014; 16:25024-38. [DOI: 10.1039/c4cp03178d] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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