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Martins-Costa MTC, Ruiz-López MF. Reactivity of Monoethanolamine at the Air-Water Interface and Implications for CO 2 Capture. J Phys Chem B 2024; 128:1289-1297. [PMID: 38279927 DOI: 10.1021/acs.jpcb.3c06856] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2024]
Abstract
The development of CO2-capture technologies is key to mitigating climate change due to anthropogenic greenhouse gas emissions. These cover a number of technologies designed to reduce the level of CO2 emitted into the atmosphere or to eliminate CO2 from ambient air. In this context, amine-based sorbents in aqueous solutions are broadly used in most advanced separation techniques currently implemented in industrial applications. It has been reported that the gas/liquid interface plays an important role in the early stages of the capture process, but how the interface influences the chemistry is still a matter of debate. With the help of first-principles molecular dynamics simulations, we show that monoethanolamine (MEA), a prototypical sorbent molecule, has a weak affinity for the air-water interface, where in addition it exhibits a lower nucleophilicity compared to bulk solution. The change in reactivity is due to the combination of structural and electronic factors, namely, the shift of the conformational equilibrium and the stabilization of the N-atom lone pair. Based on these results, strategies for improving the efficiency of alkanolamine sorbents are proposed.
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Affiliation(s)
- Marilia T C Martins-Costa
- Laboratoire de Physique et Chimie Théoriques, UMR CNRS 7019, University of Lorraine, CNRS, BP 70239, 54506 Vandoeuvre-lès-Nancy, France
| | - Manuel F Ruiz-López
- Laboratoire de Physique et Chimie Théoriques, UMR CNRS 7019, University of Lorraine, CNRS, BP 70239, 54506 Vandoeuvre-lès-Nancy, France
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2
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Li Y, Yang X, Yu Y, Zhou X, Zhang R, Sun J, Liu S. Dependence of Intramolecular Hydrogen Bond on Conformational Flexibility in Linear Aminoalcohols. J Phys Chem A 2023; 127:9013-9021. [PMID: 37875015 DOI: 10.1021/acs.jpca.3c04674] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2023]
Abstract
Intramolecular hydrogen bonds (H-bonds) are abundant in physicochemical and biological processes. The strength of such interaction is governed by a subtle balance between conformational flexibility and steric effect that are often hard to predict. Herein, using linear aminoalcohols NH2(CH2)nOH (n = 2-5) as a model system, we demonstrated the dependence of intramolecular H-bond on the backbone chain length. With sensitive photoacoustic Raman spectroscopy (PARS), the gas-phase Raman spectra of aminoalcohols were measured in both N-H and O-H stretching regions at 298 and 338 K and explained with the aid of quantum chemistry calculations. For n = 2-4, two conformers corresponding to the O-H···N intramolecular H-bond and free OH were identified, whereas for n = 5, only the free-OH conformer was identified. Compared to free OH, a striking spectral dependence was observed for the intramolecular H-bonded conformer. According to the red shift of the OH-bonded band, the strongest intramolecular H-bond yields in n = 4, but the favorable chain length to form an intramolecular hydrogen bond at room temperature was observed in n = 3, which corresponds to a six-membered-ring in 3-aminopropanol. This is in good agreement with statistical analysis from the Cambridge Structural Database (CSD) that the intramolecular hydrogen bond is preferred when the six-membered ring is formed. Furthermore, combined with the calculated thermodynamic data at the MP2/aug-cc-pVTZ//M062X/6-311++G(d,p) level, the origin of decrease in intramolecular hydrogen-bond formation was ascribed to an unfavorable negative entropy contribution when the backbone chain is further getting longer, which results in the calculated Gibbs free energy optimum changing with increasing temperature from n = 4 (0-200 K) to n = 3 (200-400 K) and to n = 2 (above 400 K). These results will provide new insight into the nature of intramolecular hydrogen bonds at the molecular level and the application of intramolecular hydrogen bonds in rational drug design and supramolecular assembly.
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Affiliation(s)
- Yuhui Li
- School of Physics and Optoelectronic Engineering, Anhui University, Hefei 230601, China
| | - Xinlang Yang
- Hefei National Laboratory for Physical Sciences at the Microscale, iChEM (Collaborative Innovation Center of Chemistry for Energy Materials), Department of Chemical Physics, University of Science and Technology of China, Hefei 230026, China
| | - Yuanqin Yu
- School of Physics and Optoelectronic Engineering, Anhui University, Hefei 230601, China
| | - Xiaoguo Zhou
- Hefei National Laboratory for Physical Sciences at the Microscale, iChEM (Collaborative Innovation Center of Chemistry for Energy Materials), Department of Chemical Physics, University of Science and Technology of China, Hefei 230026, China
| | - Rui Zhang
- School of Physics and Optoelectronic Engineering, Anhui University, Hefei 230601, China
| | - Jin Sun
- School of Physics and Optoelectronic Engineering, Anhui University, Hefei 230601, China
| | - Shilin Liu
- Hefei National Laboratory for Physical Sciences at the Microscale, iChEM (Collaborative Innovation Center of Chemistry for Energy Materials), Department of Chemical Physics, University of Science and Technology of China, Hefei 230026, China
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3
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Yap K, Krantzman KD, Lavrich RJ. Inductive Effects on Intramolecular Hydrogen Bond Strength: An Investigation of the Effect of an Electron-Withdrawing CF 3 Group Adjacent to an Alcohol Hydrogen Bond Donor. J Phys Chem A 2023; 127:7892-7897. [PMID: 37713631 PMCID: PMC10544021 DOI: 10.1021/acs.jpca.3c03485] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2023] [Revised: 09/04/2023] [Indexed: 09/17/2023]
Abstract
This combined experimental and theoretical study seeks to determine the role that inductive effects have on hydrogen bonds by an investigation into the change in intramolecular hydrogen bond strength in 2-amino-1-trifluoromethylethanol (2ATFME) relative to that in 2-aminoethanol (2AE). Toward this end, the rotational spectra of the normal, 13C, and 15N isotopologues have been measured using Fourier transform microwave spectroscopy and fit to the rotational, quadrupole coupling, and centrifugal distortion constants of the Watson A-reduction Hamiltonian. Structural parameters used to characterize the strength of the intramolecular hydrogen bond have been determined from the experimental structures of both 2ATFME and 2AE as well as from MP2/6-311++G(d,p) calculations. A comparison of these parameters in 2ATFME with those of 2AE indicates that the electron-withdrawing trifluoromethyl CF3 group strengthens the hydrogen bond. These include a 4% decrease in the distance between the donor and acceptor heavy atoms of the hydrogen bond, a 6% increase toward linearity of the OH···N angle, and a 23% decrease of the COH···N torsional angle toward planarity in 2ATFME relative to 2AE. This trend toward increased intramolecular hydrogen bond strength in 2ATFME is also observed within the ab initio structures.
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Affiliation(s)
- Kaili Yap
- Department of Chemistry and Biochemistry, College of Charleston, 66 George Street, Charleston, South Carolina 29424, United States
| | - Kristin D. Krantzman
- Department of Chemistry and Biochemistry, College of Charleston, 66 George Street, Charleston, South Carolina 29424, United States
| | - Richard J. Lavrich
- Department of Chemistry and Biochemistry, College of Charleston, 66 George Street, Charleston, South Carolina 29424, United States
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4
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Varadwaj PR. Tetrel Bonding in Anion Recognition: A First Principles Investigation. Molecules 2022; 27:molecules27238449. [PMID: 36500544 PMCID: PMC9738195 DOI: 10.3390/molecules27238449] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2022] [Revised: 11/17/2022] [Accepted: 11/21/2022] [Indexed: 12/12/2022] Open
Abstract
Twenty-five molecule-anion complex systems [I4Tt···X-] (Tt = C, Si, Ge, Sn and Pb; X = F, Cl, Br, I and At) were examined using density functional theory (ωB97X-D) and ab initio (MP2 and CCSD) methods to demonstrate the ability of the tetrel atoms in molecular entities, I4Tt, to recognize the halide anions when in close proximity. The tetrel bond strength for the [I4C···X-] series and [I4Tt···X-] (Tt = Si, Sn; X = I, At), was weak-to-moderate, whereas that in the remaining 16 complexes was dative tetrel bond type with very large interaction energies and short Tt···X close contact distances. The basis set superposition error corrected interaction energies calculated with the highest-level theory applied, [CCSD(T)/def2-TZVPPD], ranged from -3.0 to -112.2 kcal mol-1. The significant variation in interaction energies was realized as a result of different levels of tetrel bonding environment between the interacting partners at the equilibrium geometries of the complex systems. Although the ωB97X-D computed intermolecular geometries and interaction energies of a majority of the [I4Tt···X-] complexes were close to those predicted by the highest level of theory, the MP2 results were shown to be misleading for some of these systems. To provide insight into the nature of the intermolecular chemical bonding environment in the 25 molecule-anion complexes investigated, we discussed the charge-density-based topological and isosurface features that emanated from the application of the quantum theory of atoms in molecules and independent gradient model approaches, respectively.
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Affiliation(s)
- Pradeep R. Varadwaj
- Department of Chemical System Engineering, School of Engineering, The University of Tokyo 7-3-1, Tokyo 113-8656, Japan; or
- Molecular Sciences Institute, School of Chemistry, University of the Witwatersrand, Johannesburg 2050, South Africa
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5
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Kononova EG, Solonina IA, Rodnikova MN, Shirokova EV. IR spectroscopic study of the hydrogen bond network in the water–3-amino-1-propanol system and its comparison with the spatial network of hydrogen bonds in the water–monoethanolamine system. MENDELEEV COMMUNICATIONS 2022. [DOI: 10.1016/j.mencom.2022.11.043] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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6
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Siewert R, Ludwig R, Verevkin SP. Non-covalent interactions in molecular systems: thermodynamic evaluation of the hydrogen bond strength in aminoalcohols. Phys Chem Chem Phys 2021; 23:25226-25238. [PMID: 34730588 DOI: 10.1039/d1cp03817f] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
In molecules with two functional groups that form hydrogen bonds, the structure-property relationship can depend significantly on the strength of intra-molecular hydrogen bonding. This bonding can cause a substantial conformational change that is accompanied by a frequency shift in the infrared spectrum, which provides the basis for experimental studies. Despite its great importance in biological systems, the available literature data for the strength of this bonding are scarce and not in agreement. In this work, we present the results of four thermodynamic methods for the determination of the strength of intramolecular hydrogen bonds. Comprehensive thermochemical analysis of 1-amino-2-alcohols and 2-amino-1-alcohols was performed with Fourier-transform infrared spectroscopy, high-level G4 quantum-chemical calculations, the homomorph scheme with enthalpies of vaporization and a group contribution method. With the combination of these four thermodynamic methods, the strength of intramolecular hydrogen bonding in 1,2-aminoalcohols and 2,1-aminoalcohols was evaluated quantitatively. The results were correlated with NBO parameters to find an explanation for the different strengths of intramolecular hydrogen bonds in total charge transfer and second order stabilization energies.
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Affiliation(s)
- Riko Siewert
- Universität Rostock, Institut für Chemie, Abteilung für Physikalische Chemie, Dr.-Lorenz-Weg 2, 18059, Rostock, Germany. .,Department LL&M, Competence Centre CALOR, University of Rostock, Albert-Einstein-Str. 25, 18059, Rostock, Germany
| | - Ralf Ludwig
- Universität Rostock, Institut für Chemie, Abteilung für Physikalische Chemie, Dr.-Lorenz-Weg 2, 18059, Rostock, Germany. .,Department LL&M, Competence Centre CALOR, University of Rostock, Albert-Einstein-Str. 25, 18059, Rostock, Germany.,Leibniz-Institut für Katalyse an der Universität Rostock e.V., Albert-Einstein-Str. 29a, 18059 Rostock, Germany
| | - Sergey P Verevkin
- Universität Rostock, Institut für Chemie, Abteilung für Physikalische Chemie, Dr.-Lorenz-Weg 2, 18059, Rostock, Germany. .,Department LL&M, Competence Centre CALOR, University of Rostock, Albert-Einstein-Str. 25, 18059, Rostock, Germany
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7
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Theoretical studies on the electronic and optoelectronic properties of DNA/RNA hybrid-metal complexes. Polyhedron 2021. [DOI: 10.1016/j.poly.2020.115015] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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8
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Kessler E, Ninni L, Breug-Nissen T, Willy B, Schneider R, Irfan M, Rolker J, Thiel WR, von Harbou E, Hasse H. Speciation in CO2-loaded aqueous solutions of sixteen triacetoneamine-derivates (EvAs) and elucidation of structure-property relationships. Chem Eng Sci 2021. [DOI: 10.1016/j.ces.2020.115999] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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9
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Frandsen BN, Deal AM, Lane JR, Vaida V. Lactic Acid Spectroscopy: Intra- and Intermolecular Interactions. J Phys Chem A 2020; 125:218-229. [PMID: 33377780 DOI: 10.1021/acs.jpca.0c09341] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Lactic acid, a relevant molecule in biology and the environment, is an α-hydroxy acid with a high propensity to form hydrogen bonds, both internally and to other hydrogen-bond-accepting molecules. This work includes the novel recording of infrared spectra of gas-phase lactic acid using Fourier transform infrared spectroscopy, and the vibrational absorption features of lactic acid are assigned with the aid of computationally simulated vibrational spectra with anharmonic corrections. Theoretical chemistry methods are used to relate intramolecular hydrogen-bond strengths to the relative stability of lactic acid conformers. The formation of hydrogen-bonded lactic acid dimers and 1:1 water complexes is investigated by simulated vibrational spectra and calculated thermodynamic parameters for the lactic acid monomer and dimer and its water complex in the gas phase. The results of this study are discussed in the context of environmental chemistry with an emphasis on indoor environments.
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Affiliation(s)
- Benjamin N Frandsen
- Department of Chemistry, University of Colorado Boulder, Boulder, Colorado 80309, United States.,Cooperative Institute for Research in Environmental Sciences, University of Colorado Boulder, UCB 216, Boulder, Colorado 80309, United States
| | - Alexandra M Deal
- Department of Chemistry, University of Colorado Boulder, Boulder, Colorado 80309, United States.,Cooperative Institute for Research in Environmental Sciences, University of Colorado Boulder, UCB 216, Boulder, Colorado 80309, United States
| | - Joseph R Lane
- School of Science, University of Waikato, Private Bag 3105, Hamilton 3240, New Zealand
| | - Veronica Vaida
- Department of Chemistry, University of Colorado Boulder, Boulder, Colorado 80309, United States.,Cooperative Institute for Research in Environmental Sciences, University of Colorado Boulder, UCB 216, Boulder, Colorado 80309, United States
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10
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The Volumetric Source Function: Looking Inside van der Waals Interactions. Sci Rep 2020; 10:7816. [PMID: 32385337 PMCID: PMC7210285 DOI: 10.1038/s41598-020-64261-4] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2020] [Accepted: 04/14/2020] [Indexed: 01/23/2023] Open
Abstract
The study of van der Waals interactions plays a central role in the understanding of bonding across a range of biological, chemical and physical phenomena. The presence of van der Waals interactions can be identified through analysis of the reduced density gradient, a fundamental parameter at the core of Density Functional Theory. An extension of Bader’s Quantum Theory of Atoms in Molecules is developed here through combination with the analysis of the reduced density gradient. Through this development, a new quantum chemical topological tool is presented: the volumetric source function. This technique allows insight into the atomic composition of van der Waals interactions, offering the first route towards applying the highly successful source function to these disperse interactions. A new algorithm has been implemented in the open-source code, CRITIC2, and tested on acetone, adipic and maleic acids molecular crystals, each stabilized by van der Waals interactions. This novel technique for studying van der Waals interactions at an atomic level offers unprecedented opportunities in the fundamental study of intermolecular interactions and molecular design for crystal engineering, drug design and bio-macromolecular processes.
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11
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Vallejos MM, Labadie GR. Insight into the factors controlling the equilibrium of allylic azides. RSC Adv 2020; 10:4404-4413. [PMID: 35495248 PMCID: PMC9049130 DOI: 10.1039/c9ra10093h] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2019] [Accepted: 12/26/2019] [Indexed: 12/19/2022] Open
Abstract
Several allylic azides with different double bond substitutions were studied to understand the factors, governing their equilibrium using density functional theory along with the quantum theory of atoms in molecules, non-covalent interactions and natural bond orbital approaches. The results showed that the hydroxyl group or heteroatoms in allylic azides interact with the molecule through an electrostatic weak interaction in each pair of regioisomers. The equilibrium shifts of substituted allylic azides, compared to non-substituted allylic azides, were not attributed to the presence of specific interactions, such as hydrogen bonds. The observed equilibrium shifts stemmed mainly from the strengthening and weakening of negative hyperconjugative interactions, which were affected by the weak interaction involving the proximal substituent in each regioisomer. A good linear correlation was obtained between the hyperconjugative energies of πC
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C→σ*Zb interactions and the calculated percentages of the secondary azide and tertiary azide in the equilibrium mixture. Also, the effect of the aromatic ring substituent was analysed using such approaches. This study not only provides insights into the factors controlling the stabilities of the substituted allylic azides, but also settles the basis to predict the regioisomer predominance in the equilibrium mixture. The factors controlling the allyl azides equilibrium has been studied by different theoretical approaches setting the basis to predict the regioisomers predominance in the equilibrium mixture.![]()
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Affiliation(s)
- Margarita M Vallejos
- Laboratorio de Química Orgánica, IQUIBA-NEA, Universidad Nacional del Nordeste, CONICET, FACENA Av. Libertad 5460 Corrientes 3400 Argentina +54-379-4457996 ext. 104
| | - Guillermo R Labadie
- Instituto de Química Rosario, UNR, CONICET Suipacha 531 S2002LRK Rosario Argentina.,Departamento de Química Orgánica, Facultad de Ciencias Bioquímicas y Farmacéuticas, Universidad Nacional de Rosario Suipacha 531 S2002LRK Rosario Argentina
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12
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Srivastava R. Interactions, electronic and optical properties of nanographene–peptide complexes: a theoretical study. RSC Adv 2020; 10:38654-38662. [PMID: 35517564 PMCID: PMC9057264 DOI: 10.1039/d0ra07961h] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2020] [Accepted: 10/09/2020] [Indexed: 12/22/2022] Open
Abstract
We studied the interaction of planar phenylalanine (phe), tryptophan (try), tyrosine (tyr); amide asparagine (asn) and glutamine (gln); arginine (arg) side-chains, charged histidine (his-c) and charged lysine (lys-c) side-chains on a nanographene (g) surface by Density Functional theory (DFT) and Time Dependent Density Functional Theory (TDDFT). The occupied number of states by the system at each energy level and relative contribution of a particular atom/orbital has been studied by Density of States (DOS) and Partial Density of States (PDOS) respectively. Atom-in Molecules (AIM) analysis and non-covalent interaction (NCI) PLOT are used to study the interactions in these complexes. The absorption spectra and HOMO–LUMO (HL) gaps are quantitatively analysed to study the correlation between the optical properties of the studied complexes. The HL gap of peptides is larger than the HL gap of graphene–peptide complexes, indicating strong interactions. All the peptides interact from the above the nanographene surfaces. garg, glys-c, gtry and gtyr complexes have smaller bond distance as compared to gasn, ggln, ghis-c and gphe complexes. AIM analysis and (NCI) PLOT showed noncovalent interactions for these complexes. TDDFT calculations indicated the applicability of these complexes as biosensors. We studied interactions of planar phenylalanine, tryptophan, tyrosine; amide asparagine and glutamine; arginine side-chains, charged histidine and charged lysine side-chains on a nanographene surface by density functional theory and time dependent density functional theory.![]()
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Affiliation(s)
- Ruby Srivastava
- CSIR-Centre for Cellular and Molecular Biology
- Hyderabad
- India
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13
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Batista PR, Karas LJ, Viesser RV, de Oliveira CC, Gonçalves MB, Tormena CF, Rittner R, Ducati LC, de Oliveira PR. Dealing with Hydrogen Bonding on the Conformational Preference of 1,3-Aminopropanols: Experimental and Molecular Dynamics Approaches. J Phys Chem A 2019; 123:8583-8594. [PMID: 31517493 DOI: 10.1021/acs.jpca.9b05619] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
This study expands the knowledge on the conformational preference of 1,3-amino alcohols in the gas phase and in solution. By employing Fourier transform infrared spectroscopy, nuclear magnetic resonance (NMR) spectroscopy, density functional theory (DFT) calculations, quantum theory of atoms in molecules (QTAIM), natural bond orbital (NBO) analysis, and molecular dynamics (MD), the compounds 3-aminopropan-1-ol (1), 3-methylaminopropan-1-ol (2), and 3-dimethylaminopropan-1-ol (3) are evaluated. The results show that the most stable conformation of each compound in the gas phase and in nonpolar solvents exhibited an O-H···N intramolecular hydrogen bond (IHB). Based on the experimental and theoretical OH-stretching frequencies, the IHB becomes stronger from 1 to 3. In addition, from the experimental NMR J-couplings, the IHB conformers are predominant in nonbasic solvents, representing 70-80% of the conformational equilibrium, while in basic solvents, such conformers only represent 10%. DFT calculations and QTAIM analysis in the gas phase support the occurrence of IHBs in these compounds. The MD simulation indicates that the non-hydrogen-bonded conformers are the lowest energy conformations in the solution because of molecular interactions with the solvent, while they are absent in the implicit solvation model based on density. NBO analysis suggests that methyl groups attached on the nitrogen atom affect the charge transfer energy involved in the IHB. This effect occurs mostly because of a decrease in the s-character of the LPN orbital along with weakening of the charge transfer from LPN to σ*OH, which is caused by an increase in the C-C-N bond angle.
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Affiliation(s)
- Patrick R Batista
- Department of Fundamental Chemistry, Institute of Chemistry , University of São Paulo , Av. Prof. Lineu Prestes , P.O. Box 748, 05508-000 São Paulo , São Paulo , Brazil
| | - Lucas J Karas
- Department of Chemistry , University of Houston , Houston , Texas 77204 , United States
| | - Renan V Viesser
- Physical Organic Chemistry Laboratory, Institute of Chemistry , University of Campinas , P.O. Box 6154, 13083-970 Campinas , São Paulo , Brazil
| | - Cynthia C de Oliveira
- Academic Department of Physics , Federal Technological University of Paraná , 80230-901 Curitiba , Paraná , Brazil
| | - Marcos B Gonçalves
- Academic Department of Physics , Federal Technological University of Paraná , 80230-901 Curitiba , Paraná , Brazil
| | - Cláudio F Tormena
- Physical Organic Chemistry Laboratory, Institute of Chemistry , University of Campinas , P.O. Box 6154, 13083-970 Campinas , São Paulo , Brazil
| | - Roberto Rittner
- Physical Organic Chemistry Laboratory, Institute of Chemistry , University of Campinas , P.O. Box 6154, 13083-970 Campinas , São Paulo , Brazil
| | - Lucas C Ducati
- Department of Fundamental Chemistry, Institute of Chemistry , University of São Paulo , Av. Prof. Lineu Prestes , P.O. Box 748, 05508-000 São Paulo , São Paulo , Brazil
| | - Paulo R de Oliveira
- Conformational Analysis and Renewable Resources Laboratory, Department of Chemistry and Biology , Federal Technological University of Paraná , P.O. Box 5000, 81280-340 Curitiba , Paraná , Brazil
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14
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Cis/Trans Energetics in Epoxide, Thiirane, Aziridine and Phosphirane Containing Cyclopentanols: Effects of Intramolecular OH⋯O, S, N and P Contacts. Molecules 2019; 24:molecules24142523. [PMID: 31295845 PMCID: PMC6680949 DOI: 10.3390/molecules24142523] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2019] [Revised: 06/24/2019] [Accepted: 07/03/2019] [Indexed: 02/01/2023] Open
Abstract
A recent computational analysis of the stabilizing intramolecular OH⋯O contact in 1,2-dialkyl-2,3-epoxycyclopentanol diastereomers has been extended to thiiriane, aziridine and phosphirane analogues. Density functional theory (DFT), second-order Møller-Plesset perturbation theory (MP2) and CCSD(T) coupled-cluster computations with simple methyl and ethyl substituents indicate that electronic energies of the cis isomers are lowered by roughly 3 to 4 kcal mol−1 when the OH group of these cyclopentanol systems forms an intramolecular contact with the O, S, N or P atom on the adjacent carbon. The results also suggest that S and P can participate in these stabilizing intramolecular interactions as effectively as O and N in constrained molecular environments. The stabilizing intramolecular OH⋯O, OH⋯S, OH⋯N and OH⋯P contacts also increase the covalent OH bond length and significantly decrease the OH stretching vibrational frequency in every system with shifts typically on the order of −41 cm−1.
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15
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Varadwaj PR, Varadwaj A, Marques HM, MacDougall PJ. The chalcogen bond: can it be formed by oxygen? Phys Chem Chem Phys 2019; 21:19969-19986. [DOI: 10.1039/c9cp03783g] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
This study theoretically investigates the possibility of oxygen-centered chalcogen bonding in several complexes. Shown in the graph is such a bonding scenario formed between the electrophile on O in OF2 and the nucleophile on O in H2CO.
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Affiliation(s)
- Pradeep R. Varadwaj
- Department of Chemical System Engineering
- School of Engineering
- The University of Tokyo 7-3-1
- Tokyo 113-8656
- Japan
| | - Arpita Varadwaj
- Department of Chemical System Engineering
- School of Engineering
- The University of Tokyo 7-3-1
- Tokyo 113-8656
- Japan
| | - Helder M. Marques
- Molecular Sciences Institute
- School of Chemistry
- University of the Witwatersrand
- Johannesburg 2050
- South Africa
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16
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Hohl JA, Harris MW, Strasser N, Kelterer AM, Lavrich RJ. Competing Intramolecular Hydrogen Bond Strengths and Intermolecular Interactions in the 4-Aminobutanol-Water Complex. J Phys Chem A 2018; 122:8505-8510. [PMID: 30299959 DOI: 10.1021/acs.jpca.8b05888] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
We seek to determine the effect of competing intermolecular hydrogen bonds from water on the preferred conformation of 4-aminobutanol (4AB) monomers stabilized by intramolecular hydrogen bonds. Toward this end, the rotational spectrum of the 4-aminobutanol-H2O complex was recorded using Fourier transform microwave spectroscopy and fit to the rotational, quadrupole coupling, and centrifugal distortion constants of the Watson S-reduction Hamiltonian. The experimental results are consistent with a 4AB-water complex that preserves the intramolecular hydrogen bond within the 4AB monomer and forms a single intermolecular bond with water acting as a donor. The experimental monomer structure agrees well with the lowest energy conformation calculated at the MP2/6-311++G(d,p) level of theory. Upon complex formation and the introduction of competing intermolecular bonds from water, only small changes in the OH···N intramolecular hydrogen bond and backbone torsional angles of the 4-aminobutanol monomer are observed. Similar small changes were observed for the shorter chain 3-aminopropanol amino alcohol monomer when complexed with water, in contrast to the 2-aminoethanol-H2O complex. In the latter, a large change in the backbone torsional angle and a breaking of the intramolecular hydrogen bond were observed. Thus, extending the methylene chain results in an increase in the strength of the intramolecular hydrogen bond in unbranched amino alcohols.
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Affiliation(s)
- Jenna A Hohl
- Department of Chemistry and Biochemistry , College of Charleston , 66 George Street , Charleston , South Carolina 29424 , United States
| | - Michael W Harris
- Department of Chemistry and Biochemistry , College of Charleston , 66 George Street , Charleston , South Carolina 29424 , United States
| | - Nina Strasser
- Institute of Physical and Theoretical Chemistry, NAWI Graz , Graz University of Technology , Stremayrgasse 9/Z2 , 8010 Graz , Austria
| | - Anne-Marie Kelterer
- Institute of Physical and Theoretical Chemistry, NAWI Graz , Graz University of Technology , Stremayrgasse 9/Z2 , 8010 Graz , Austria
| | - Richard J Lavrich
- Department of Chemistry and Biochemistry , College of Charleston , 66 George Street , Charleston , South Carolina 29424 , United States
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17
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Affiliation(s)
- Emil Vogt
- Department of Chemistry, University of Copenhagen, Copenhagen Ø, Denmark
| | - Daniel S. Sage
- Department of Mathematics, Louisiana State University, Baton Rouge, LA, USA
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18
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Varadwaj A, Varadwaj PR, Marques HM, Yamashita K. A DFT assessment of some physical properties of iodine-centered halogen bonding and other non-covalent interactions in some experimentally reported crystal geometries. Phys Chem Chem Phys 2018; 20:15316-15329. [PMID: 29796486 DOI: 10.1039/c8cp01085d] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Abstract
A set of six binary complexes that feature iodine-centered halogen bonding, extracted from structures deposited in the Cambridge Structure Database, has been examined computationally using density functional theory calculations with the M06-2X global hybrid, and dispersion corrected B3LYP-D3 and B97-D3, to determine their equilibrium geometries, binding energies and electronic properties. The results show that gas phase calculations are very informative in evaluating what occurs in the solid state, even though these calculations ignore the importance of lattice packing and counter ion effects. The calculated binding energies for the non-covalent interactions responsible for these complexes lie between -4.15 and -7.48 kcal mol-1 (M06-2X), which enables us to characterize them as weak-to-moderate in strength. The basis set superposition error energies are calculated to vary between 0.60 and 2.42 kcal mol-1 for all the complexes examined, even though an all-electron QZP basis set used in the analysis was of quadrupole-ζ (plus polarization) quality. Dispersion is found to have a profound effect on the binding energy of some of these complexes, and was estimated to be as large as 5.0 kcal mol-1. For one complex, the crystal geometry could not be precisely reproduced using a gas phase calculation. While both halogen- and hydrogen-bonding interactions were found competitive, they cooperate with each other to determine the stable configuration of the binary complex. The molecular electrostatic surface potential, quantum theory of atoms in molecules, and reduced density gradient non-covalent Interaction models were utilized to arrive at a fundamental understanding of the various inter- and intra-molecular molecular interactions involved, as well as some other previously-overlooked non-covalent interactions that emerge in the modelling.
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Affiliation(s)
- Arpita Varadwaj
- Department of Chemical System Engineering, School of Engineering, The University of Tokyo, 7-3-1, Hongo, Bunkyo-ku, 113-8656, Japan.
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19
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Bouchet A, Klyne J, Ishiuchi SI, Dopfer O, Fujii M, Zehnacker A. Stereochemistry-dependent structure of hydrogen-bonded protonated dimers: the case of 1-amino-2-indanol. Phys Chem Chem Phys 2018; 20:12430-12443. [DOI: 10.1039/c8cp00787j] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
Stereochemistry effects on the structure of molecular aggregates are studied in the prototypical 1-amino-2-indanol. Conformer-selective IR-UV double resonance spectroscopy reveals how stereochemistry shapes its dimers.
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Affiliation(s)
- Aude Bouchet
- Laboratory for Chemistry and Life Science
- Institute of Innovative Research
- Tokyo Institute of Technology
- Yokohama
- Japan
| | - Johanna Klyne
- Institut für Optik und Atomare Physik
- Technische Universität Berlin
- Berlin
- Germany
| | - Shun-ichi Ishiuchi
- Laboratory for Chemistry and Life Science
- Institute of Innovative Research
- Tokyo Institute of Technology
- Yokohama
- Japan
| | - Otto Dopfer
- Institut für Optik und Atomare Physik
- Technische Universität Berlin
- Berlin
- Germany
| | - Masaaki Fujii
- Laboratory for Chemistry and Life Science
- Institute of Innovative Research
- Tokyo Institute of Technology
- Yokohama
- Japan
| | - Anne Zehnacker
- Institut des Sciences Moléculaires d’Orsay (ISMO)
- CNRS
- Univ. Paris-Sud
- Université Paris-Saclay
- F-91405 Orsay
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20
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Hamdan II, El-Sabawi D, Abu-Dahab R. Solubility of Gliclazide and Ion-Molecular Interactions with Aminopropanol in Aqueous Solutions. RUSSIAN JOURNAL OF PHYSICAL CHEMISTRY A 2018. [DOI: 10.1134/s0036024418010107] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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21
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Ross SP, Baire B, Hoye TR. Mechanistic Duality in Tertiary Amine Additions to Thermally Generated Hexadehydro-Diels-Alder Benzynes. Org Lett 2017; 19:5705-5708. [PMID: 28981290 PMCID: PMC5650509 DOI: 10.1021/acs.orglett.7b02888] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Reported here are studies directed at understanding the mechanism of tertiary amine addition to hexadehydro-Diels-Alder (HDDA)-generated benzynes. Tertiary amines are presumed to engage benzynes by generation of a zwitterionic intermediate. Simple trialkylamines undergo intermolecular protonation by a protic nucleophile to give an aryl ammonium intermediate that is then dealkylated. Amines containing acidified β-protons undergo an intramolecular elimination to give the aniline and an alkene. Finally, amino alcohols react at either of their N- or O atoms, depending upon the extent of internal hydrogen bonding.
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Affiliation(s)
- Sean P. Ross
- Department of Chemistry, University of Minnesota, 207 Pleasant St., SE, Minneapolis, MN 55455
| | - Beeraiah Baire
- Department of Chemistry, University of Minnesota, 207 Pleasant St., SE, Minneapolis, MN 55455
| | - Thomas R. Hoye
- Department of Chemistry, University of Minnesota, 207 Pleasant St., SE, Minneapolis, MN 55455
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22
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Khalil AS, Kelterer AM, Lavrich RJ. Interplay of Intermolecular and Intramolecular Hydrogen Bonds on Complex Formation: The 3-Aminopropanol–Water van der Waals Complex. J Phys Chem A 2017; 121:6646-6651. [DOI: 10.1021/acs.jpca.7b05745] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Andrew S. Khalil
- Department
of Chemistry and Biochemistry, College of Charleston, 66 George
Street, Charleston, South
Carolina 29424, United States
| | - Anne-Marie Kelterer
- Institute
of Physical and Theoretical Chemistry, Graz University of Technology, NAWI Graz., Stremayrgasse 9/Z2, Graz, Austria
| | - Richard J. Lavrich
- Department
of Chemistry and Biochemistry, College of Charleston, 66 George
Street, Charleston, South
Carolina 29424, United States
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23
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Lane JR, Hansen AS, Mackeprang K, Kjaergaard HG. Kinetic Energy Density as a Predictor of Hydrogen-Bonded OH-Stretching Frequencies. J Phys Chem A 2017; 121:3452-3460. [DOI: 10.1021/acs.jpca.7b02523] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Joseph R. Lane
- School
of Science, University of Waikato, Private Bag 3105, Hamilton 3240, New Zealand
| | - Anne S. Hansen
- Department
of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen, Denmark
| | - Kasper Mackeprang
- Department
of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen, Denmark
| | - Henrik G. Kjaergaard
- Department
of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen, Denmark
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24
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Karas LJ, Batista PR, Viesser RV, Tormena CF, Rittner R, de Oliveira PR. Trends of intramolecular hydrogen bonding in substituted alcohols: a deeper investigation. Phys Chem Chem Phys 2017. [DOI: 10.1039/c7cp03572a] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
NBO analyses were used to perform a deeper investigation on the effects that drive IAHB strength in substituted acyclic alcohols.
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Affiliation(s)
- Lucas J. Karas
- Conformational Analysis and Renewable Resources Laboratory
- Department of Chemistry and Biology
- Federal University of Technology-Paraná
- Curitiba
- Brazil
| | - Patrick R. Batista
- Conformational Analysis and Renewable Resources Laboratory
- Department of Chemistry and Biology
- Federal University of Technology-Paraná
- Curitiba
- Brazil
| | - Renan V. Viesser
- Physical Organic Chemistry Laboratory
- Institute of Chemistry
- University of Campinas
- 13083-970 Campinas
- Brazil
| | - Cláudio F. Tormena
- Physical Organic Chemistry Laboratory
- Institute of Chemistry
- University of Campinas
- 13083-970 Campinas
- Brazil
| | - Roberto Rittner
- Physical Organic Chemistry Laboratory
- Institute of Chemistry
- University of Campinas
- 13083-970 Campinas
- Brazil
| | - Paulo R. de Oliveira
- Conformational Analysis and Renewable Resources Laboratory
- Department of Chemistry and Biology
- Federal University of Technology-Paraná
- Curitiba
- Brazil
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25
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Asselin P, Madebène B, Soulard P, Georges R, Goubet M, Huet TR, Pirali O, Zehnacker-Rentien A. Competition between inter- and intra-molecular hydrogen bonding: An infrared spectroscopic study of jet-cooled amino-ethanol and its dimer. J Chem Phys 2016; 145:224313. [DOI: 10.1063/1.4972016] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Pierre Asselin
- Sorbonne Universités, UPMC Univ Paris 06, UMR 8233, MONARIS, F-75005 Paris, France
- CNRS, UMR 8233, MONARIS, F-75005 Paris, France
| | - Bruno Madebène
- Sorbonne Universités, UPMC Univ Paris 06, UMR 8233, MONARIS, F-75005 Paris, France
- CNRS, UMR 8233, MONARIS, F-75005 Paris, France
| | - Pascale Soulard
- Sorbonne Universités, UPMC Univ Paris 06, UMR 8233, MONARIS, F-75005 Paris, France
- CNRS, UMR 8233, MONARIS, F-75005 Paris, France
| | - Robert Georges
- Institut de Physique de Rennes, Campus de Beaulieu, Bat 11C, UMR 6251, Université de Rennes 1-CNRS, 35042 Rennes Cedex, France
| | - Manuel Goubet
- Université Lille, CNRS, UMR 8523—PhLAM–Physique des Lasers, Atomes et Molécules, F-59000 Lille, France
| | - Thérèse R. Huet
- Université Lille, CNRS, UMR 8523—PhLAM–Physique des Lasers, Atomes et Molécules, F-59000 Lille, France
| | - Olivier Pirali
- Institut des Sciences Moléculaires d’Orsay (ISMO), CNRS, University of Paris-Sud, Université Paris-Saclay, F-91405 Orsay, France
- Ligne AILES — Synchrotron SOLEIL, L’Orme des Merisiers, F-91192 Gif-sur-Yvette Cedex, France
| | - Anne Zehnacker-Rentien
- Institut des Sciences Moléculaires d’Orsay (ISMO), CNRS, University of Paris-Sud, Université Paris-Saclay, F-91405 Orsay, France
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26
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Baggioli A, Cavallotti CA, Famulari A. Exploring short intramolecular interactions in alkylaromatic substrates. Phys Chem Chem Phys 2016; 18:29616-29628. [PMID: 27753437 DOI: 10.1039/c6cp03323g] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
From proteins and peptides to semiconducting polymers, aliphatic chains on aromatic groups are recurring motifs in macromolecules from very diverse application fields. Fields in which molecular folding and packing determine the macroscopic physical properties that make such advanced materials appealing in the first place. Within each macromolecule, the intrinsic structure of each unit defines how it interacts with its neighbours, ultimately opening up or denying certain backbone conformations. This eventually also determines how macromolecules interact with each other. This account deals specifically with the conformational problem of many common alkylaromatic units, examining the features of an intramolecular interaction involving a side chain with as few as three methylene groups. A set of 23 model compounds featuring an intramolecular interaction between an aliphatic X-H (X = C, N, O, and S) bond and an aromatic ring was considered. Quantitative computational analysis was made possible, thanks to complete basis set extrapolated CCSD(T) calculations and NCI topological analysis, the latter of which revealed an elaborate network of dispersive and steric interactions leading to somewhat unintuitive and unexpected results, such as the higher energetic stability of certain twisted conformational isomers over those with extended side chains. Vicinal covalent effects from polarizing groups and various heteroatoms, along with the occurrence of non-dispersive phenomena, were also investigated. The conclusions drawn from the investigation include a comprehensive set of guidelines intended to aid in the prediction of the most stable conformation for this class of building blocks. Our findings affect a variety of different research fields, including the tailoring of functional materials for organic electronics and photovoltaics, with insights into a rational treatment of conformational disorder, and the study of protein- and peptide-folding preferences, putting an emphasis on peculiar interactions between the backbone and aromatic residues.
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Affiliation(s)
- Alberto Baggioli
- Dipartimento di Chimica, Materiali e Ingegneria Chimica "G. Natta", Politecnico di Milano, via Mancinelli 7, I-20131 Milano, Italy.
| | - Carlo A Cavallotti
- Dipartimento di Chimica, Materiali e Ingegneria Chimica "G. Natta", Politecnico di Milano, via Mancinelli 7, I-20131 Milano, Italy.
| | - Antonino Famulari
- Dipartimento di Chimica, Materiali e Ingegneria Chimica "G. Natta", Politecnico di Milano, via Mancinelli 7, I-20131 Milano, Italy.
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27
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Lane JR, Schrøder SD, Saunders GC, Kjaergaard HG. Intramolecular Hydrogen Bonding in Substituted Aminoalcohols. J Phys Chem A 2016; 120:6371-8. [DOI: 10.1021/acs.jpca.6b05898] [Citation(s) in RCA: 35] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Joseph R. Lane
- School
of Science, University of Waikato, Private Bag 3105, Hamilton 3240, New Zealand
| | - Sidsel D. Schrøder
- Department
of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen, Denmark
| | - Graham C. Saunders
- School
of Science, University of Waikato, Private Bag 3105, Hamilton 3240, New Zealand
| | - Henrik G. Kjaergaard
- Department
of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen, Denmark
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28
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Futami Y, Ozaki Y, Ozaki Y. Absorption intensity changes and frequency shifts of fundamental and first overtone bands for OH stretching vibration of methanol upon methanol–pyridine complex formation in CCl4: analysis by NIR/IR spectroscopy and DFT calculations. Phys Chem Chem Phys 2016; 18:5580-6. [DOI: 10.1039/c5cp07027a] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The first overtone of the OH stretching mode of the OH–N hydrogen bond of the methanol–pyridine complex was observed.
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Affiliation(s)
- Yoshisuke Futami
- Department of Biological and Chemical Systems Engineering
- National Institute of Technology
- Kumamoto College
- Yatsushiro
- Japan
| | - Yasushi Ozaki
- Department of Chemistry
- Faculty of Science
- Josai University
- Sakado
- Japan
| | - Yukihiro Ozaki
- Department of Chemistry
- School of Science and Technology
- KwanseiGakuin University
- Sanda
- Japan
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29
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Pastorczak E, Prlj A, Gonthier JF, Corminboeuf C. Intramolecular symmetry-adapted perturbation theory with a single-determinant wavefunction. J Chem Phys 2015; 143:224107. [DOI: 10.1063/1.4936830] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Ewa Pastorczak
- Laboratory for Computational Molecular Design, Institut des Sciences et Ingénierie Chimiques, École Polytechnique Fédérale de Lausanne, CH-1015 Lausanne, Switzerland
| | - Antonio Prlj
- Laboratory for Computational Molecular Design, Institut des Sciences et Ingénierie Chimiques, École Polytechnique Fédérale de Lausanne, CH-1015 Lausanne, Switzerland
| | - Jérôme F. Gonthier
- Center for Computational Molecular Science and Technology, School of Chemistry and Biochemistry, School of Computational Science and Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332-0400, USA
| | - Clémence Corminboeuf
- Laboratory for Computational Molecular Design, Institut des Sciences et Ingénierie Chimiques, École Polytechnique Fédérale de Lausanne, CH-1015 Lausanne, Switzerland
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30
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Determination of the molecular structure of gaseous proline by electron diffraction, supported by microwave and quantum chemical data. Struct Chem 2015. [DOI: 10.1007/s11224-015-0589-5] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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31
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Klinting EL, König C, Christiansen O. Hybrid Optimized and Localized Vibrational Coordinates. J Phys Chem A 2015; 119:11007-21. [DOI: 10.1021/acs.jpca.5b08496] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
| | - Carolin König
- Department of Chemistry, Aarhus University, DK-8000 Aarhus C, Denmark
| | - Ove Christiansen
- Department of Chemistry, Aarhus University, DK-8000 Aarhus C, Denmark
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32
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Tariq M, Shimizu K, Esperança JMSS, Canongia Lopes JN, Rebelo LPN. Viscosity minima in binary mixtures of ionic liquids + molecular solvents. Phys Chem Chem Phys 2015; 17:13480-94. [PMID: 25933136 DOI: 10.1039/c5cp01563d] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The viscosity (η) of four binary mixtures (ionic liquids plus molecular solvents, ILs+MSs) was measured in the 283.15 < T/K < 363.15 temperature range. Different IL/MS combinations were selected in such a way that the corresponding η(T) functions exhibit crossover temperatures at which both pure components present identical viscosity values. Consequently, most of the obtained mixture isotherms, η(x), exhibit clear viscosity minima in the studied T-x range. The results are interpreted using auxiliary molecular dynamics (MD) simulation data in order to correlate the observed η(T,x) trends with the interactions in each mixture, including the balance between electrostatic forces and hydrogen bonding.
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Affiliation(s)
- M Tariq
- Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, Av. da República, 2780-157 Oeiras, Portugal
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33
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Czarnecki MA, Morisawa Y, Futami Y, Ozaki Y. Advances in Molecular Structure and Interaction Studies Using Near-Infrared Spectroscopy. Chem Rev 2015; 115:9707-44. [DOI: 10.1021/cr500013u] [Citation(s) in RCA: 146] [Impact Index Per Article: 16.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
| | - Yusuke Morisawa
- Department
of Chemistry, School of Science and Engineering, Kinki University, Higashi-Osaka, Osaka 577-8502, Japan
| | - Yoshisuke Futami
- Department
of Biological and Chemical Systems Engineering, National Institute of Technology, Kumamoto College, Yatsushiro, Kumamoto 866-8501, Japan
| | - Yukihiro Ozaki
- Department
of Chemistry, School of Science and Technology, Kwansei Gakuin University, Sanda, Hyogo 669-1337, Japan
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34
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Schrøder SD, Wallberg JH, Kroll JA, Maroun Z, Vaida V, Kjaergaard HG. Intramolecular Hydrogen Bonding in Methyl Lactate. J Phys Chem A 2015; 119:9692-702. [DOI: 10.1021/acs.jpca.5b04812] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Sidsel D. Schrøder
- Department
of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen Ø, Denmark
| | - Jens H. Wallberg
- Department
of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen Ø, Denmark
| | - Jay A. Kroll
- Department
of Chemistry and Biochemistry, University of Colorado, Boulder, Colorado 80309-0215, United States
- Cooperative Institute for Research in Environmental Sciences, Boulder, Colorado 80309, United States
| | - Zeina Maroun
- Department
of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen Ø, Denmark
| | - Veronica Vaida
- Department
of Chemistry and Biochemistry, University of Colorado, Boulder, Colorado 80309-0215, United States
- Cooperative Institute for Research in Environmental Sciences, Boulder, Colorado 80309, United States
| | - Henrik G. Kjaergaard
- Department
of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen Ø, Denmark
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35
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Ripoll JD, Mejía SM, Mills MJL, Villa AL. Understanding the azeotropic diethyl carbonate-water mixture by structural and energetic characterization of DEC(H2O)(n) heteroclusters. J Mol Model 2015; 21:93. [PMID: 25786831 DOI: 10.1007/s00894-015-2593-5] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2014] [Accepted: 01/26/2015] [Indexed: 11/24/2022]
Abstract
Diethyl carbonate (DEC) is an oxygenated fuel additive. During its synthesis through a promising green process, a DEC-water azeotrope is formed, which decreases DEC production efficiency in the gas phase. Molecular information about this system is scarce but could be of benefit in understanding (and potentially improving) the synthetic process. Therefore, we report a detailed computational study of the conformers of DEC, and their microsolvation with up to four water molecules, with the goal of understanding the observed 1:3 DEC:H2O molar ratio. The most stable DEC conformers (with mutual energy differences < 1.5 kcal mol(-1)) contribute to the energetic and structural properties of the complexes. An exhaustive stochastic exploration of each potential energy surface of DEC-(H2O)n, (where n = 1, 2, 3, 4) heteroclusters discovered 3, 8, 7, and 4 heterodimers, heterotrimers, heterotetramers, and heteropentamers, respectively, at the MP2/6-311++G(d,p) level of theory. DEC conformers and energies of the most stable structures at each heterocluster size were refined using CCSD(T)/6-311++G(d,p). Energy decomposition, electron density topology, and cooperative effects analyses were carried out to determine the relationship between the geometrical features of the heteroclusters and the non-covalent interaction types responsible for their stabilization. Our findings show that electrostatic and exchange energies are responsible for heterocluster stabilization, and also suggest a mutual weakening among hydrogen bonds when more than three water molecules are present. All described results are complementary and suggest a structural and energetic explanation at the molecular level for the experimental molar ratio of 1:3 (DEC:H2O) for the DEC-water azeotrope.
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Affiliation(s)
- Juan D Ripoll
- Environmental Catalysis Research Group, Chemical Engineering Department, Engineering Faculty, Universidad de Antioquia, Calle 70 No. 52-21, Medellin, Colombia
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