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McCarthy MC, McGuire BA. Aromatics and Cyclic Molecules in Molecular Clouds: A New Dimension of Interstellar Organic Chemistry. J Phys Chem A 2021; 125:3231-3243. [DOI: 10.1021/acs.jpca.1c00129] [Citation(s) in RCA: 24] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Michael C. McCarthy
- Center for Astrophysics
- Harvard & Smithsonian, 60 Garden Street, Cambridge Massachusetts 02138, United States
| | - Brett A. McGuire
- Center for Astrophysics
- Harvard & Smithsonian, 60 Garden Street, Cambridge Massachusetts 02138, United States
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
- National Radio Astronomy Observatory, Charlottesville, Virginia 22903, United States
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Quintas-Sánchez E, Dawes R, Lee K, McCarthy MC. Automated Construction of Potential Energy Surfaces Suitable to Describe van der Waals Complexes with Highly Excited Nascent Molecules: The Rotational Spectra of Ar-CS( v) and Ar-SiS( v). J Phys Chem A 2020; 124:4445-4454. [PMID: 32368913 DOI: 10.1021/acs.jpca.0c02685] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Some reactions produce extremely hot nascent products which nevertheless can form sufficiently long-lived van der Waals (vdW) complexes-with atoms or molecules from a bath gas-as to be observed via microwave spectroscopy. Theoretical calculations of such unbound resonance states can be much more challenging than ordinary bound-state calculations depending on the approach employed. One encounters not just the floppy, and perhaps multiwelled potential energy surface (PES) characteristic of vdWs complexes, but in addition, one must contend with excitation of the intramolecular modes and its corresponding influence on the PES. Straightforward computation of the (resonance) rovibrational levels of interest, involves the added complication of the unbound nature of the wave function, often treated with techniques such as introducing a complex absorbing potential. Here, we have demonstrated that a simplified approach of making a series of vibrationally effective PESs for the intermolecular coordinates-one for each reaction product vibrational quantum number of interest-can produce vdW levels for the complex with spectroscopic accuracy. This requires constructing a series of appropriately weighted lower-dimensional PESs for which we use our freely available PES-fitting code AUTOSURF. The applications of this study are the Ar-CS and Ar-SiS complexes, which are isovalent to Ar-CO and Ar-SiO, the latter of which we considered in a previously reported study. Using a series of vibrationally effective PESs, rovibrational levels and predicted microwave transition frequencies for both complexes were computed variationally. A series of shifting rotational transition frequencies were also computed as a function of the diatom vibrational quantum number. The predicted transitions were used to guide and inform an experimental effort to make complementary observations. Comparisons are given for the transitions that are within the range of the spectrometer and were successfully recorded. Calculations of the rovibrational level pattern agree to within 0.2% with experimental measurements.
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Affiliation(s)
- Ernesto Quintas-Sánchez
- Department of Chemistry, Missouri University of Science and Technology, Rolla, Missouri 65409, United States
| | - Richard Dawes
- Department of Chemistry, Missouri University of Science and Technology, Rolla, Missouri 65409, United States
| | - Kelvin Lee
- Harvard-Smithsonian Center for Astrophysics, Cambridge, Massachusetts 02138, United States
| | - Michael C McCarthy
- Harvard-Smithsonian Center for Astrophysics, Cambridge, Massachusetts 02138, United States.,School of Engineering and Applied Sciences, Harvard University, 29 Oxford Street, Cambridge, Massachusetts 02138, United States
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McCarthy MC, Ndengué SA, Dawes R. The rotational spectrum and potential energy surface of the Ar–SiO complex. J Chem Phys 2018; 149:134308. [DOI: 10.1063/1.5048202] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Michael C. McCarthy
- Harvard-Smithsonian Center for Astrophysics, 60 Garden Street, Cambridge, Massachusetts 02138, USA and School of Engineering and Applied Sciences, Harvard University, 29 Oxford Street, Cambridge, Massachusetts 02138, USA
| | - Steve Alexandre Ndengué
- Department of Chemistry, Missouri University of Science and Technology, Rolla, Missouri 65409, USA
| | - Richard Dawes
- Department of Chemistry, Missouri University of Science and Technology, Rolla, Missouri 65409, USA
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Zaleski DP, Prozument K. Automated assignment of rotational spectra using artificial neural networks. J Chem Phys 2018; 149:104106. [DOI: 10.1063/1.5037715] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Daniel P. Zaleski
- Chemical Sciences and Engineering Division, Argonne National Laboratory, Argonne, Illinois 60439,
USA
| | - Kirill Prozument
- Chemical Sciences and Engineering Division, Argonne National Laboratory, Argonne, Illinois 60439,
USA
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McCarthy MC, Martinez O, McGuire BA, Crabtree KN, Martin-Drumel MA, Stanton JF. Isotopic studies of trans- and cis-HOCO using rotational spectroscopy: Formation, chemical bonding, and molecular structures. J Chem Phys 2016; 144:124304. [DOI: 10.1063/1.4944070] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022] Open
Affiliation(s)
- Michael C. McCarthy
- Harvard-Smithsonian Center for Astrophysics, 60 Garden Street, Cambridge, Massachusetts 02138, USA and School of Engineering and Applied Sciences, Harvard University, 29 Oxford Street, Cambridge, Massachusetts 02138, USA
| | - Oscar Martinez
- Harvard-Smithsonian Center for Astrophysics, 60 Garden Street, Cambridge, Massachusetts 02138, USA and School of Engineering and Applied Sciences, Harvard University, 29 Oxford Street, Cambridge, Massachusetts 02138, USA
| | - Brett A. McGuire
- Harvard-Smithsonian Center for Astrophysics, 60 Garden Street, Cambridge, Massachusetts 02138, USA and School of Engineering and Applied Sciences, Harvard University, 29 Oxford Street, Cambridge, Massachusetts 02138, USA
- National Radio Astronomy Observatory, Charlottesville, Virginia 22901, USA
| | - Kyle N. Crabtree
- Harvard-Smithsonian Center for Astrophysics, 60 Garden Street, Cambridge, Massachusetts 02138, USA and School of Engineering and Applied Sciences, Harvard University, 29 Oxford Street, Cambridge, Massachusetts 02138, USA
| | - Marie-Aline Martin-Drumel
- Harvard-Smithsonian Center for Astrophysics, 60 Garden Street, Cambridge, Massachusetts 02138, USA and School of Engineering and Applied Sciences, Harvard University, 29 Oxford Street, Cambridge, Massachusetts 02138, USA
| | - John F. Stanton
- Department of Chemistry and Biochemistry, The University of Texas at Austin, 1 University Station A5300, Austin, Texas 78712-0165, USA
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Martin-Drumel MA, McCarthy MC, Patterson D, McGuire BA, Crabtree KN. Automated microwave double resonance spectroscopy: A tool to identify and characterize chemical compounds. J Chem Phys 2016; 144:124202. [DOI: 10.1063/1.4944089] [Citation(s) in RCA: 35] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Marie-Aline Martin-Drumel
- Harvard-Smithsonian Center for Astrophysics, 60 Garden Street, Cambridge, Massachusetts 02138, USA
- School of Engineering and Applied Sciences, Harvard University, 29 Oxford Street, Cambridge, Massachusetts 02138, USA
| | - Michael C. McCarthy
- Harvard-Smithsonian Center for Astrophysics, 60 Garden Street, Cambridge, Massachusetts 02138, USA
- School of Engineering and Applied Sciences, Harvard University, 29 Oxford Street, Cambridge, Massachusetts 02138, USA
| | - David Patterson
- Department of Physics, Harvard University, Cambridge, Massachusetts 02138, USA
| | - Brett A. McGuire
- Harvard-Smithsonian Center for Astrophysics, 60 Garden Street, Cambridge, Massachusetts 02138, USA
- National Radio Astronomy Observatory, Charlottesville, Virginia 22903, USA
| | - Kyle N. Crabtree
- Department of Chemistry, University of California, Davis, Davis, California 95616, USA
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Thorwirth S, Kaiser RI, Crabtree KN, McCarthy MC. Spectroscopic and structural characterization of three silaisocyanides: exploring an elusive class of reactive molecules at high resolution. Chem Commun (Camb) 2015; 51:11305-8. [PMID: 26083592 DOI: 10.1039/c5cc02548f] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Silaisocyanoacetylene, HCCNSi, silaisocyanodiacetylene, HC4NSi, and silaisocyanogen, NCNSi, have been identified spectroscopically for the first time. All three transient species were observed at high spectral resolution at centimeter wavelengths (5-40 GHz) by microwave spectroscopy. From detection of less abundant isotopic species and high-level quantum-chemical calculations, accurate empirical equilibrium structures have been derived for HCCNSi and NCNSi. All three molecules are promising candidates for future radio astronomical detection owing in part to large calculated dipole moments.
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Affiliation(s)
- Sven Thorwirth
- I. Physikalisches Institut, Universität zu Köln, Zülpicher Str. 77, 50937 Köln, Germany.
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Pan S, Saha R, Chattaraj PK. Exploring the nature of silicon-noble gas bonds in H3SiNgNSi and HSiNgNSi compounds (Ng = Xe, Rn). Int J Mol Sci 2015; 16:6402-18. [PMID: 25809612 PMCID: PMC4394539 DOI: 10.3390/ijms16036402] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2015] [Revised: 03/11/2015] [Accepted: 03/16/2015] [Indexed: 11/16/2022] Open
Abstract
Ab initio and density functional theory-based computations are performed to investigate the structure and stability of H3SiNgNSi and HSiNgNSi compounds (Ng = Xe, Rn). They are thermochemically unstable with respect to the dissociation channel producing Ng and H3SiNSi or HSiNSi. However, they are kinetically stable with respect to this dissociation channel having activation free energy barriers of 19.3 and 23.3 kcal/mol for H3SiXeNSi and H3SiRnNSi, respectively, and 9.2 and 12.8 kcal/mol for HSiXeNSi and HSiRnNSi, respectively. The rest of the possible dissociation channels are endergonic in nature at room temperature for Rn analogues. However, one three-body dissociation channel for H3SiXeNSi and one two-body and one three-body dissociation channels for HSiXeNSi are slightly exergonic in nature at room temperature. They become endergonic at slightly lower temperature. The nature of bonding between Ng and Si/N is analyzed by natural bond order, electron density and energy decomposition analyses. Natural population analysis indicates that they could be best represented as (H3SiNg)+(NSi)- and (HSiNg)+(NSi)-. Energy decomposition analysis further reveals that the contribution from the orbital term (ΔEorb) is dominant (ca. 67%-75%) towards the total attraction energy associated with the Si-Ng bond, whereas the electrostatic term (ΔEelstat) contributes the maximum (ca. 66%-68%) for the same in the Ng-N bond, implying the covalent nature of the former bond and the ionic nature of the latter.
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Affiliation(s)
- Sudip Pan
- Department of Chemistry and Centre for Theoretical Studies, Indian Institute of Technology, Kharagpur 721302, India.
| | - Ranajit Saha
- Department of Chemistry and Centre for Theoretical Studies, Indian Institute of Technology, Kharagpur 721302, India.
| | - Pratim K Chattaraj
- Department of Chemistry and Centre for Theoretical Studies, Indian Institute of Technology, Kharagpur 721302, India.
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Zaleski DP, Stephens SL, Walker NR. A perspective on chemistry in transient plasma from broadband rotational spectroscopy. Phys Chem Chem Phys 2014; 16:25221-8. [DOI: 10.1039/c4cp04108a] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A review of recent experiments demonstrating the high value of broadband rotational spectroscopy applied to analyse molecular products of plasma chemistry.
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Affiliation(s)
- Daniel P. Zaleski
- School of Chemistry
- Bedson Building
- Newcastle University
- Newcastle upon Tyne
- , UK
| | - Susanna L. Stephens
- School of Chemistry
- Bedson Building
- Newcastle University
- Newcastle upon Tyne
- , UK
| | - Nicholas R. Walker
- School of Chemistry
- Bedson Building
- Newcastle University
- Newcastle upon Tyne
- , UK
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