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Abstract
The reactivity and dynamics of molecular systems can be explored computationally by classical trajectory calculations. The traditional approach involves fitting a functional form of a potential energy surface (PES) to the energies from a large number of electronic structure calculations and then integrating numerous trajectories on this fitted PES to model the molecular dynamics. The ever-decreasing cost of computing and continuing advances in computational chemistry software have made it possible to use electronic structure calculations directly in molecular dynamics simulations without first having to construct a fitted PES. In this "on-the-fly" approach, every time the energy and its derivatives are needed for the integration of the equations of motion, they are obtained directly from quantum chemical calculations. This approach started to become practical in the mid-1990s as a result of increased availability of inexpensive computer resources and improved computational chemistry software. The application of direct dynamics calculations has grown rapidly over the last 25 years and would require a lengthy review article. The present Account is limited to some of our contributions to methods development and various applications. To improve the efficiency of direct dynamics calculations, we developed a Hessian-based predictor-corrector algorithm for integrating classical trajectories. Hessian updating made this even more efficient. This approach was also used to improve algorithms for following the steepest descent reaction paths. For larger molecular systems, we developed an extended Lagrangian approach in which the electronic structure is propagated along with the molecular structure. Strong field chemistry is a rapidly growing area, and to improve the accuracy of molecular dynamics in intense laser fields, we included the time-varying electric field in a novel predictor-corrector trajectory integration algorithm. Since intense laser fields can excite and ionize molecules, we extended our studies to include electron dynamics. Specifically, we developed code for time-dependent configuration interaction electron dynamics to simulate strong field ionization by intense laser pulses. Our initial application of ab initio direct dynamics in 1994 was to CH2O → H2 + CO; the calculated vibrational distributions in the products were in very good agreement with experiment. In the intervening years, we have used direct dynamics to explore energy partitioning in various dissociation reactions, unimolecular dissociations yielding three fragments, reactions with branching after the transition state, nonstatistical dynamics of chemically activated molecules, dynamics of molecular fragmentation by intense infrared laser pulses, selective activation of specific dissociation channels by aligned intense infrared laser fields, angular dependence of strong field ionization, and simulation of sequential double ionization.
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Affiliation(s)
- H. Bernhard Schlegel
- Department of Chemistry, Wayne State University, Detroit, Michigan 48202, United States
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Wu H, Xue Y, Wen J, Wang H, Fan Q, Chen G, Zhu J, Qu F, Guo J. Theoretical and experimental studies on hydrogen migration in dissociative ionization of the methanol monocation to molecular ions H3+ and H2O+. RSC Adv 2019; 9:16683-16689. [PMID: 35516392 PMCID: PMC9064428 DOI: 10.1039/c9ra02003a] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2019] [Accepted: 05/21/2019] [Indexed: 12/04/2022] Open
Abstract
The dissociative ionization processes of the methanol monocation CH3OH+ to H3+ + CHO and H2O+ + CH2 are studied by ab initio method, and hydrogen migration processes are confirmed in these two dissociation processes. Due to the positive charge assignment in dissociation processes, the fragmentation pathways of CH3OH+ to H3 + CHO+ and CH3OH+ to H2O + CH2+ are also calculated. The calculation results show that a neutral H2 moiety in the methanol monocation CH3OH+ is the origin of the formation of H3+, and the ejection of fragment ions H3+ and H2O+ is more difficult than CHO+ and CH2+ respectively. Experimentally, by using a dc-slice imaging technique under an 800 nm femtosecond laser field, the velocity distributions of fragment ions H3+, CHO+, CH2+, and H2O+ are calculated from their corresponding sliced images. The presence of low-velocity components of these four fragment ions confirms that the formation of these ions is not from the Coulomb explosion of the methanol dication. Hence, the four hydrogen migration pathways from the methanol monocation CH3OH+ to H3+ + CHO, CHO+ + H3, H2O+ + CH2, and CH2+ + H2O are securely confirmed. It can be observed in the time-of-flight mass spectrum of ionization and dissociation of methanol that the ion yields of fragment ions H3+ and H2O+ are lower than CHO+ and CH2+ respectively, which is consistent with the theoretical results according to which dissociation from the methanol monocation to H3+ and H2O+ is more difficult than CHO+ and CH2+ respectively. Hydrogen migration processes of methanol monocation CH3OH+ to H3+, COH+, H2O+ and CH2+ were studied theoretically and experimentally.![]()
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Affiliation(s)
- Hua Wu
- School of Sciences
- Xi'an Shiyou University
- P. R. China
| | - Yuanxin Xue
- School of Sciences
- Xi'an Shiyou University
- P. R. China
| | - Junqing Wen
- School of Sciences
- Xi'an Shiyou University
- P. R. China
| | - Hui Wang
- School of Sciences
- Xi'an Shiyou University
- P. R. China
| | - Qingfei Fan
- State Key Laboratory of Precision Spectroscopy
- School of Physics and Materials
- East China Normal University
- Shanghai 200062
- P. R. China
| | - Guoxiang Chen
- School of Sciences
- Xi'an Shiyou University
- P. R. China
| | - Jin Zhu
- School of Sciences
- Xi'an Shiyou University
- P. R. China
| | - Fanghui Qu
- School of Sciences
- Xi'an Shiyou University
- P. R. China
| | - Jiale Guo
- School of Sciences
- Xi'an Shiyou University
- P. R. China
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Ekanayake N, Nairat M, Kaderiya B, Feizollah P, Jochim B, Severt T, Berry B, Pandiri KR, Carnes KD, Pathak S, Rolles D, Rudenko A, Ben-Itzhak I, Mancuso CA, Fales BS, Jackson JE, Levine BG, Dantus M. Mechanisms and time-resolved dynamics for trihydrogen cation (H 3+) formation from organic molecules in strong laser fields. Sci Rep 2017; 7:4703. [PMID: 28680157 PMCID: PMC5498647 DOI: 10.1038/s41598-017-04666-w] [Citation(s) in RCA: 39] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2017] [Accepted: 05/18/2017] [Indexed: 11/09/2022] Open
Abstract
Strong-field laser-matter interactions often lead to exotic chemical reactions. Trihydrogen cation formation from organic molecules is one such case that requires multiple bonds to break and form. We present evidence for the existence of two different reaction pathways for H3+ formation from organic molecules irradiated by a strong-field laser. Assignment of the two pathways was accomplished through analysis of femtosecond time-resolved strong-field ionization and photoion-photoion coincidence measurements carried out on methanol isotopomers, ethylene glycol, and acetone. Ab initio molecular dynamics simulations suggest the formation occurs via two steps: the initial formation of a neutral hydrogen molecule, followed by the abstraction of a proton from the remaining CHOH2+ fragment by the roaming H2 molecule. This reaction has similarities to the H2 + H2+ mechanism leading to formation of H3+ in the universe. These exotic chemical reaction mechanisms, involving roaming H2 molecules, are found to occur in the ~100 fs timescale. Roaming molecule reactions may help to explain unlikely chemical processes, involving dissociation and formation of multiple chemical bonds, occurring under strong laser fields.
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Affiliation(s)
- Nagitha Ekanayake
- Department of Chemistry, Michigan State University, East Lansing, Michigan, 48824, USA
| | - Muath Nairat
- Department of Chemistry, Michigan State University, East Lansing, Michigan, 48824, USA
| | - Balram Kaderiya
- J. R. Macdonald Laboratory, Department of Physics, Kansas State University, Manhattan, Kansas, 66506, USA
| | - Peyman Feizollah
- J. R. Macdonald Laboratory, Department of Physics, Kansas State University, Manhattan, Kansas, 66506, USA
| | - Bethany Jochim
- J. R. Macdonald Laboratory, Department of Physics, Kansas State University, Manhattan, Kansas, 66506, USA
| | - Travis Severt
- J. R. Macdonald Laboratory, Department of Physics, Kansas State University, Manhattan, Kansas, 66506, USA
| | - Ben Berry
- J. R. Macdonald Laboratory, Department of Physics, Kansas State University, Manhattan, Kansas, 66506, USA
| | - Kanaka Raju Pandiri
- J. R. Macdonald Laboratory, Department of Physics, Kansas State University, Manhattan, Kansas, 66506, USA
| | - Kevin D Carnes
- J. R. Macdonald Laboratory, Department of Physics, Kansas State University, Manhattan, Kansas, 66506, USA
| | - Shashank Pathak
- J. R. Macdonald Laboratory, Department of Physics, Kansas State University, Manhattan, Kansas, 66506, USA
| | - Daniel Rolles
- J. R. Macdonald Laboratory, Department of Physics, Kansas State University, Manhattan, Kansas, 66506, USA
| | - Artem Rudenko
- J. R. Macdonald Laboratory, Department of Physics, Kansas State University, Manhattan, Kansas, 66506, USA
| | - Itzik Ben-Itzhak
- J. R. Macdonald Laboratory, Department of Physics, Kansas State University, Manhattan, Kansas, 66506, USA
| | - Christopher A Mancuso
- Department of Chemistry, Michigan State University, East Lansing, Michigan, 48824, USA
| | - B Scott Fales
- Department of Chemistry, Michigan State University, East Lansing, Michigan, 48824, USA
| | - James E Jackson
- Department of Chemistry, Michigan State University, East Lansing, Michigan, 48824, USA
| | - Benjamin G Levine
- Department of Chemistry, Michigan State University, East Lansing, Michigan, 48824, USA
| | - Marcos Dantus
- Department of Chemistry, Michigan State University, East Lansing, Michigan, 48824, USA. .,Department of Physics and Astronomy, Michigan State University, East Lansing, Michigan, 48824, USA.
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Mosley JD, Young JW, Huang M, McCoy AB, Duncan MA. Infrared spectroscopy of the methanol cation and its methylene-oxonium isomer. J Chem Phys 2015; 142:114301. [DOI: 10.1063/1.4914146] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- J. D. Mosley
- Department of Chemistry, University of Georgia, Athens, Georgia 30602, USA
| | - J. W. Young
- Department of Chemistry, University of Georgia, Athens, Georgia 30602, USA
| | - M. Huang
- Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio 43210, USA
| | - A. B. McCoy
- Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio 43210, USA
| | - M. A. Duncan
- Department of Chemistry, University of Georgia, Athens, Georgia 30602, USA
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Thapa B, Schlegel HB. Molecular dynamics of methylamine, methanol, and methyl fluoride cations in intense 7 micron laser fields. J Phys Chem A 2014; 118:10067-72. [PMID: 25268677 DOI: 10.1021/jp507251e] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Fragmentation and isomerization of methylamine (CH3NH2(+)), methanol (CH3OH(+)), and methyl fluoride (CH3F(+)) cations by short, intense laser pulses have been studied by ab initio classical trajectory calculations. Born-Oppenheimer molecular dynamics (BOMD) on the ground-state potential energy surface were calculated with the CAM-B3LYP/6-31G(d,p) level of theory for the cations in a four-cycle laser pulse with a wavelengths of 7 μm and intensities of 0.88 × 10(14) and 1.7 × 10(14) W/cm(2). The most abundant reaction path was CH2X(+) + H (63-100%), with the second most favorable path being HCX(+) + H2 (0-33%), followed by isomerization to CH2XH(+) (0-8%). C-X cleavage after isomerization was observed only in methyl fluoride. Compared to random orientation, CH3X(+) with the C-X aligned with the laser polarization gained energy nearly twice as much from laser fields. The percentage of CH3(+) + X dissociation increased when the C-X bond was aligned with the laser field. Alignment also increased the branching ratio for H2 elimination in CH3NH2(+) and CH3OH(+) and for isomerization in CH3OH(+).
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Affiliation(s)
- Bishnu Thapa
- Department of Chemistry, Wayne State University , Detroit, Michigan 48202, United States
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