Behind the reactivity of lactones: a computational and spectroscopic study of phenol·γ-butyrolactone

Cooperative effect on phenolic νO-H frequencies in 1:1 hydrogen bonded complexes of o-fluorophenols with water: A matrix isolation infrared spectroscopic study

Matrix isolation infrared spectra of 1:1 complexes of two ortho-fluorophenols, 2-fluorophenol (2-FPh) and 2,6-difluorophenol (2,6-DFPh), with water and benzene have been analyzed in combination with electronic structure calculations to investigate cooperative effect in O-H···O-H···F hydrogen bonded linkage, which manifests as large spectral shifts of the phenolic O-H stretching fundamental. Calculation predicts that a nearly planar cyclic geometry is preferred by the binary water complexes of the syn conformer of 2-FPh as well as 2,6-DFPh, and the observed spectral shifts are in good agreement with the predicted shifts for such conformers. On the other hand, for other possible isomeric structures, the molecular plane of water moiety is oriented perpendicular to that of the fluorophenols, and the observed as well as predicted shifts are smaller than those of the ortho substituted fluorophenols, although the total binding energies are predicted to be larger for the former. The observed spectral shifts are however consistent with local interaction energy parameters, like hyperconjugative charge transfer and accumulation of electron density (ρ) along the O-H···O hydrogen bond path. For the binary O-H···π hydrogen bonded benzene complexes of the fluorophenols, where cooperative interaction is not possible, the observed shifts are consistent with the conformers preferred according to total binding energies as well as local charge transfer effects of the complexes.

Sugar-peptidic bond interactions: spectroscopic characterization of a model system

Sugars are small carbohydrates which play numerous roles in living organisms such as storage of energy or as structural components. Modifications of specific sites within the glycan chain can modulate a carbohydrate's overall biological function as it happens with nucleic acids and proteins. Hence, identifying discrete carbohydrate modifications and understanding their biological effects is essential. A study of such processes requires of a deep knowledge of the interaction mechanism at the molecular level. Here, we use a combination of laser spectroscopy in jets and quantum mechanical calculations to characterize the interaction between phenyl-β-d-glucopyranoside and N-methylacetamide as a model to understand the interaction between a sugar and a peptide bond. The most stable structure of the molecular aggregate shows that the main interaction between the peptide fragment and the sugar proceeds via a C[double bond, length as m-dash]OH-O2 hydrogen bond. A second conformer was also found, in which the peptide establishes a C[double bond, length as m-dash]OH-O6 hydrogen bond with the hydroxymethyl substituent of the sugar unit. All the conformers present an additional interaction point with the aromatic ring. This particular preference of the peptide for the hydroxyl close to the aromatic ring could explain why glycogenin uses tyrosine in order to convert glucose into glycogen by exposing the O4H hydroxyl group for the other glucoses for the polymerization to take place.