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Syzgantseva MA, Stepanov NF, Syzgantseva OA. Band Alignment as the Method for Modifying Electronic Structure of Metal-Organic Frameworks. ACS APPLIED MATERIALS & INTERFACES 2020; 12:17611-17619. [PMID: 32208619 DOI: 10.1021/acsami.0c02094] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Electronic-level ordering in metal-organic frameworks (MOFs) is a route to modulate their electronic properties such as optical absorption, band alignment, work function, charge separation, charge carrier lifetimes, and ground- or excited-state conductivity. A systematic application of this approach requires the knowledge on how a MOF chemical composition affects its electronic structure. In this work, the fundamental principles for selecting MOF components to achieve targeted level alignment are considered. Correlations between the electronic parameters of building blocks and MOF band structure are analyzed. The factors affecting the energy position of constituents are discussed. In particular, the impact of the chemical composition of ligands, including the structure of its scaffold and side groups, on their energy positions in MOFs is addressed. Besides, the effect of the choice of reference potential and surface termination on the band alignment is investigated. The performance of several density functionals in the computation of absolute band positions is assessed. Finally, general principles for the modification of the MOF electronic structure are formulated and the routes to achieve an appropriate band alignment with carrier-transporting materials, co-catalysts, and redox reaction potentials are suggested.
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Affiliation(s)
- Maria A Syzgantseva
- Laboratory of Quantum Mechanics and Molecular Structure, Department of Chemistry, Lomonosov Moscow State University, Moscow 119991, Russia
| | - Nikolay F Stepanov
- Laboratory of Quantum Mechanics and Molecular Structure, Department of Chemistry, Lomonosov Moscow State University, Moscow 119991, Russia
| | - Olga A Syzgantseva
- Laboratory of Molecular Simulation (LSMO), Institut des Sciences et Ingénierie Chimiques, Valais, Ecole Polytechnique Fédérale de Lausanne (EPFL), Rue de l'Industrie 17, CH-1951 Sion, Switzerland
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2
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Oger S, Schapman D, Mougeot R, Leleu S, Lascoux N, Baldeck P, Bénard M, Gallavardin T, Galas L, Franck X. Two-Photon Absorption and Cell Imaging of Fluorene-Functionalized Epicocconone Analogues. Chemistry 2019; 25:10954-10964. [PMID: 31215691 DOI: 10.1002/chem.201902731] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2019] [Indexed: 12/13/2022]
Abstract
Epicocconone 1 is a natural chromophore isolated from the fungus Epicoccum nigrum that has shown applications in proteomics and fluorescent microscopy thanks to its unique pro-fluorescence properties. The modification of the skeleton of the natural product by replacing the triene side chain by a fluorenyl scaffold can noticeably increase the fluorophore's absorption coefficient. The synthesis of the analogues of the natural product has been made possible by the use of a palladium-catalyzed carbonylation reaction, allowing the construction of the β-keto-dioxinone key intermediate. Two-photon absorption cross-section measurements of the fluorenyl epicocconone analogues show a structure dependency with values ranging from 60 to 280 GM and live cell imaging show intense staining of intracellular vesicle-like structures around the nucleus.
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Affiliation(s)
- Samuel Oger
- COBRA (UMR 6014 and FR 3038), Normandie Univ, CNRS, INSA Rouen, UNIROUEN, 76000, Rouen, France
| | - Damien Schapman
- PRIMACEN, Cell Imaging Platform of Normandy, Institute for Research and Innovation in Biomedicine (IRIB), Normandie Univ, Inserm, UNIROUEN, 76000, Rouen, France
| | - Romain Mougeot
- COBRA (UMR 6014 and FR 3038), Normandie Univ, CNRS, INSA Rouen, UNIROUEN, 76000, Rouen, France
| | - Stéphane Leleu
- COBRA (UMR 6014 and FR 3038), Normandie Univ, CNRS, INSA Rouen, UNIROUEN, 76000, Rouen, France
| | - Noëlle Lascoux
- Laboratoire de Chimie UMR 5182, Ecole Normale Supérieure de Lyon,CNRS, Université Lyon 1, 46, allée d'Italie, 69364, Lyon Cedex 07, France
| | - Patrice Baldeck
- Laboratoire de Chimie UMR 5182, Ecole Normale Supérieure de Lyon,CNRS, Université Lyon 1, 46, allée d'Italie, 69364, Lyon Cedex 07, France
| | - Magalie Bénard
- PRIMACEN, Cell Imaging Platform of Normandy, Institute for Research and Innovation in Biomedicine (IRIB), Normandie Univ, Inserm, UNIROUEN, 76000, Rouen, France
| | - Thibault Gallavardin
- COBRA (UMR 6014 and FR 3038), Normandie Univ, CNRS, INSA Rouen, UNIROUEN, 76000, Rouen, France
| | - Ludovic Galas
- PRIMACEN, Cell Imaging Platform of Normandy, Institute for Research and Innovation in Biomedicine (IRIB), Normandie Univ, Inserm, UNIROUEN, 76000, Rouen, France
| | - Xavier Franck
- COBRA (UMR 6014 and FR 3038), Normandie Univ, CNRS, INSA Rouen, UNIROUEN, 76000, Rouen, France
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3
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Campetella M, Perfetto A, Ciofini I. Quantifying partial hole-particle distance at the excited state: A revised version of the DCT index. Chem Phys Lett 2019. [DOI: 10.1016/j.cplett.2018.10.060] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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4
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Bonvicini A, Reinholdt P, Tognetti V, Joubert L, Wüstner D, Kongsted J. Rational design of novel fluorescent analogues of cholesterol: a “step-by-step” computational study. Phys Chem Chem Phys 2019; 21:15487-15503. [DOI: 10.1039/c9cp01902b] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
State-of-the-art quantum chemical and molecular dynamics simulations are used as guidelines in design of novel fluorescent analogues of cholesterol.
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Affiliation(s)
- Andrea Bonvicini
- Normandy Univ. COBRA UMR 6014 & FR 3038
- Université de Rouen
- INSA Rouen
- CNRS
- 76821 Mont Saint Aignan
| | - Peter Reinholdt
- Department of Physics, Chemistry and Pharmacy
- University of Southern Denmark
- Odense M
- Denmark
| | - Vincent Tognetti
- Normandy Univ. COBRA UMR 6014 & FR 3038
- Université de Rouen
- INSA Rouen
- CNRS
- 76821 Mont Saint Aignan
| | - Laurent Joubert
- Normandy Univ. COBRA UMR 6014 & FR 3038
- Université de Rouen
- INSA Rouen
- CNRS
- 76821 Mont Saint Aignan
| | - Daniel Wüstner
- Department of Biochemistry and Molecular Biology
- University of Southern Denmark
- DK-5230 Odense
- Denmark
| | - Jacob Kongsted
- Department of Physics, Chemistry and Pharmacy
- University of Southern Denmark
- Odense M
- Denmark
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5
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Bonvicini A, Guilhaudis L, Tognetti V, Desmaële D, Sauvonnet N, Oulyadi H, Joubert L. Revisiting absorption and electronic circular dichroism spectra of cholesterol in solution: a joint experimental and theoretical study. Phys Chem Chem Phys 2018; 20:5274-5284. [PMID: 29405212 DOI: 10.1039/c7cp07713k] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Cholesterol is doubtless one of the most studied bio-molecules, which unfortunately features low emitting properties, precluding its in vivo study by fluorescence experiments. The design of fluorescent analogues of cholesterol is thus an appealing challenge in biochemistry, which simultaneously requires minor changes in its chemical structure (to retain main biological properties) and considerable enhancement of light emission. To this aim, the photochemical behaviour of the native molecule has to be deeply understood. In this work, we focused our attention on the electronic absorption of cholesterol in several common organic solutions, combining experimental (through ultraviolet-visible and electronic circular dichroism spectroscopy) and theoretical approaches (at the time-dependent density functional theory level) in order to solve the important discrepancies previously reported in the literature on the maximum absorption wavelengths and on the nature (Rydberg and/or π → π*) of the associated electronic transition.
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Affiliation(s)
- Andrea Bonvicini
- Normandy Univ., COBRA UMR 6014 & FR 3038, Université de Rouen, INSA Rouen, CNRS, 1 rue Tesniére 76821 Mont St Aignan, Cedex, France.
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6
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Savarese M, Guido CA, Brémond E, Ciofini I, Adamo C. Metrics for Molecular Electronic Excitations: A Comparison between Orbital- and Density-Based Descriptors. J Phys Chem A 2017; 121:7543-7549. [DOI: 10.1021/acs.jpca.7b07080] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Marika Savarese
- CompuNet, Istituto Italiano di Tecnologia, via Morego 30, I-16163 Genoa, Italy
| | - Ciro Achille Guido
- Laboratoire CEISAM−UMR CNRS 6230, Université de Nantes, 2 Rue de la Houssinière, 44322 Nantes Cedex 3, France
| | - Eric Brémond
- CompuNet, Istituto Italiano di Tecnologia, via Morego 30, I-16163 Genoa, Italy
| | - Ilaria Ciofini
- Chimie ParisTech, PSL Research University, CNRS,
Institut de Recherche de Chimie Paris, F-75005 Paris, France
| | - Carlo Adamo
- Chimie ParisTech, PSL Research University, CNRS,
Institut de Recherche de Chimie Paris, F-75005 Paris, France
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7
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Karuso P, Loa Kum Cheung W, Peixoto PA, Boulangé A, Franck X. Epicocconone-Hemicyanine Hybrids: Near Infrared Fluorophores for Protein Staining and Cell Imaging. Chemistry 2016; 23:1820-1829. [DOI: 10.1002/chem.201604698] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2016] [Indexed: 12/13/2022]
Affiliation(s)
- Peter Karuso
- Department of Chemistry and Biomolecular Sciences; Macquarie University; Sydney NSW 2109 Australia
| | - Wendy Loa Kum Cheung
- Department of Chemistry and Biomolecular Sciences; Macquarie University; Sydney NSW 2109 Australia
| | - Philippe A. Peixoto
- Normandie Univ.; CNRS, UNIROUEN, INSA Rouen, COBRA (UMR 6014 & FR 3038); 76000 Rouen France
- Present address: Univ. Bordeaux; ISM (CNRS-UMR 5255); 351 Cours de la Libération Talence 33405 Cedex France
| | - Agathe Boulangé
- Normandie Univ.; CNRS, UNIROUEN, INSA Rouen, COBRA (UMR 6014 & FR 3038); 76000 Rouen France
- Present address: AQUISTAIN; Domaine du Haut-Carré, Bâtiment C5; 351 Cours de la Libération 33400 Talence France
| | - Xavier Franck
- Normandie Univ.; CNRS, UNIROUEN, INSA Rouen, COBRA (UMR 6014 & FR 3038); 76000 Rouen France
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9
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Yahia-Ouahmed M, Tognetti V, Joubert L. Intramolecular halogen bonding: an interacting quantum atoms study. Theor Chem Acc 2016. [DOI: 10.1007/s00214-015-1796-2] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
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10
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Adamo C, Le Bahers T, Savarese M, Wilbraham L, García G, Fukuda R, Ehara M, Rega N, Ciofini I. Exploring excited states using Time Dependent Density Functional Theory and density-based indexes. Coord Chem Rev 2015. [DOI: 10.1016/j.ccr.2015.03.027] [Citation(s) in RCA: 85] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
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11
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Chatterjee S, Karuso P, Boulangé A, Franck X, Datta A. Excited State Dynamics of Brightly Fluorescent Second Generation Epicocconone Analogues. J Phys Chem B 2015; 119:6295-303. [DOI: 10.1021/acs.jpcb.5b02190] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Soumit Chatterjee
- Department of Chemistry & Biomolecular Sciences, Macquarie University, Sydney 2109, Australia
| | - Peter Karuso
- Department of Chemistry & Biomolecular Sciences, Macquarie University, Sydney 2109, Australia
| | - Agathe Boulangé
- Normandie Univ,
COBRA, UMR 6014 et FR 3038, CNRS, Univ Rouen, INSA Rouen, 1 rue Tesnières, 76821 Mont-Saint-Aignan, Cedex, France
| | - Xavier Franck
- Normandie Univ,
COBRA, UMR 6014 et FR 3038, CNRS, Univ Rouen, INSA Rouen, 1 rue Tesnières, 76821 Mont-Saint-Aignan, Cedex, France
| | - Anindya Datta
- Department
of Chemistry, Indian Institute of Technology Bombay, Mumbai 400076, India
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12
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Tognetti V, Morell C, Joubert L. Quantifying electro/nucleophilicity by partitioning the dual descriptor. J Comput Chem 2015; 36:649-59. [PMID: 25649932 DOI: 10.1002/jcc.23840] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2014] [Revised: 12/19/2014] [Accepted: 12/20/2014] [Indexed: 12/28/2022]
Abstract
Translating local electro/nucleophilicities into the language of reactive sites is an appealing theoretical challenge that could be conducive to strengthen the collaborative dialogue between experimentalists and quantum chemists. The usual schemes for such condensation, relying on atomic charges, may however lead to important information loss, due to a sometimes inappropriate averaging of the reactivity anisotropy. In this article, we present instead an approach based on the dual descriptor Δf, which aims at partitioning real space into nonoverlapping reactive domains that feature a constant Δf sign. This strategy enables not only to identify the nucleo/electrophilic regions inside a molecule but also to quantify meaningful properties (mean value, volume, electron population…). Its interest is then illustrated on two specific chemical problems: the measure of σ-holes in the context of halogen bonds, and of the electrophilicity of organic carbocations, casting the light on the versatility of this method.
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Affiliation(s)
- Vincent Tognetti
- Normandy University, COBRA UMR 6014 & FR 3038, Université de Rouen, INSA Rouen, CNRS, 1 rue Tesniére, 76821, Mont St Aignan, Cedex, France
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13
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De Proft F, Forquet V, Ourri B, Chermette H, Geerlings P, Morell C. Investigation of electron density changes at the onset of a chemical reaction using the state-specific dual descriptor from conceptual density functional theory. Phys Chem Chem Phys 2015; 17:9359-68. [DOI: 10.1039/c4cp05454g] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The electron density changes from reactants towards the transition state of a chemical reaction is expressed as a linear combination of the state-specific dual descriptors (SSDD) of the corresponding reactant complexes.
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Affiliation(s)
- Frank De Proft
- Research group of General Chemistry
- Vrije Universiteit Brussel (VUB)
- B-1050 Brussels
- Belgium
| | - Valérian Forquet
- Université de Lyon
- Institut des Sciences Analytiques
- UMR 5280
- CNRS
- Université Claude Bernard Lyon 1
| | - Benjamin Ourri
- Université de Lyon
- Institut des Sciences Analytiques
- UMR 5280
- CNRS
- Université Claude Bernard Lyon 1
| | - Henry Chermette
- Université de Lyon
- Institut des Sciences Analytiques
- UMR 5280
- CNRS
- Université Claude Bernard Lyon 1
| | - Paul Geerlings
- Research group of General Chemistry
- Vrije Universiteit Brussel (VUB)
- B-1050 Brussels
- Belgium
| | - Christophe Morell
- Université de Lyon
- Institut des Sciences Analytiques
- UMR 5280
- CNRS
- Université Claude Bernard Lyon 1
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14
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Peixoto PA, Boulangé A, Ball M, Naudin B, Alle T, Cosette P, Karuso P, Franck X. Design and Synthesis of Epicocconone Analogues with Improved Fluorescence Properties. J Am Chem Soc 2014; 136:15248-56. [DOI: 10.1021/ja506914p] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- Philippe A. Peixoto
- Normandie Université, COBRA, UMR 6014 & FR 3038; Université de Rouen; INSA Rouen; CNRS, 1 rue Tesnière, 76821 Mont-Saint-Aignan Cedex, France
| | - Agathe Boulangé
- Normandie Université, COBRA, UMR 6014 & FR 3038; Université de Rouen; INSA Rouen; CNRS, 1 rue Tesnière, 76821 Mont-Saint-Aignan Cedex, France
| | - Malcolm Ball
- Department
of Chemistry and Biomolecular Sciences, Macquarie University, Sydney, NSW 2109, Australia
| | - Bertrand Naudin
- CNRS UMR 6270, PBS & FR3038, Plateforme Protéomique PISSARO, Université de Rouen, 76821 Mont-Saint-Aignan, France
| | - Thibault Alle
- Normandie Université, COBRA, UMR 6014 & FR 3038; Université de Rouen; INSA Rouen; CNRS, 1 rue Tesnière, 76821 Mont-Saint-Aignan Cedex, France
| | - Pascal Cosette
- CNRS UMR 6270, PBS & FR3038, Plateforme Protéomique PISSARO, Université de Rouen, 76821 Mont-Saint-Aignan, France
| | - Peter Karuso
- Department
of Chemistry and Biomolecular Sciences, Macquarie University, Sydney, NSW 2109, Australia
| | - Xavier Franck
- Normandie Université, COBRA, UMR 6014 & FR 3038; Université de Rouen; INSA Rouen; CNRS, 1 rue Tesnière, 76821 Mont-Saint-Aignan Cedex, France
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15
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Tognetti V, Boulangé A, Peixoto PA, Franck X, Joubert L. A theoretical study on diastereoselective oxidative dearomatization by iodoxybenzoic acid. J Mol Model 2014; 20:2342. [DOI: 10.1007/s00894-014-2342-1] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2014] [Accepted: 06/08/2014] [Indexed: 01/31/2023]
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16
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Guégan F, Mignon P, Tognetti V, Joubert L, Morell C. Dual descriptor and molecular electrostatic potential: complementary tools for the study of the coordination chemistry of ambiphilic ligands. Phys Chem Chem Phys 2014; 16:15558-69. [DOI: 10.1039/c4cp01613k] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
The possibility to retrieve the coordinating properties of ligands by a combined dual descriptor and molecular electrostatic potential analysis is shown, yielding a potentially predictive tool of their ambiphilicity and selectivity.
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Affiliation(s)
- Frédéric Guégan
- Laboratoire des Sciences Analytiques
- UMR CNRS 5280
- Université Claude Bernard Lyon
- 1 69622 Villeurbanne Cedex, France
| | - Pierre Mignon
- Laboratoire des Sciences Analytiques
- UMR CNRS 5280
- Université Claude Bernard Lyon
- 1 69622 Villeurbanne Cedex, France
| | - Vincent Tognetti
- Normandy University
- COBRA UMR 6014 & FR 3038
- Université de Rouen
- INSA Rouen
- CNRS
| | - Laurent Joubert
- Normandy University
- COBRA UMR 6014 & FR 3038
- Université de Rouen
- INSA Rouen
- CNRS
| | - Christophe Morell
- Laboratoire des Sciences Analytiques
- UMR CNRS 5280
- Université Claude Bernard Lyon
- 1 69622 Villeurbanne Cedex, France
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