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Michalczyk M, Kizior B, Zierkiewicz W, Scheiner S. Factors contributing to halogen bond strength and stretch or contraction of internal covalent bond. Phys Chem Chem Phys 2023; 25:2907-2915. [PMID: 36636920 DOI: 10.1039/d2cp05598h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
The halogen bond formed by a series of Lewis acids TF3X (T = C, Si, Ge, Sn, Pb; X = Cl, Br, I) with NH3 is studied by quantum chemical calculations. The interaction energy is closely mimicked by the depth of the σ-hole on the X atom as well as the full electrostatic energy. There is a first trend by which the hole is deepened if the T atom to which X is attached becomes more electron-withdrawing: C > Si > Ge > Sn > Pb. On the other hand, larger more polarizable T atoms are better able to transmit the electron-withdrawing power of the F substituents. The combination of these two opposing factors leaves PbF3X forming the strongest XBs, followed by CF3X, with SiF3X engaging in the weakest bonds. The charge transfer from the NH3 lone pair into the σ*(TX) antibonding orbital tends to elongate the covalent TX bond, and this force is largest for the heavier X and T atoms. On the other hand, the contraction of this bond deepens the σ-hole at the X atom, which would enhance both the electrostatic component and the full interaction energy. This bond-shortening effect is greatest for the lighter X atoms. The combination of these two opposing forces leaves the T-X bond contracting for X = Cl and Br, but lengthening for I.
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Affiliation(s)
- Mariusz Michalczyk
- Faculty of Chemistry, Wrocław University of Science and Technology, Wybrzeże Wyspiańskiego 27, 50-370, Wrocław, Poland.
| | - Beata Kizior
- Faculty of Chemistry, Wrocław University of Science and Technology, Wybrzeże Wyspiańskiego 27, 50-370, Wrocław, Poland.
| | - Wiktor Zierkiewicz
- Faculty of Chemistry, Wrocław University of Science and Technology, Wybrzeże Wyspiańskiego 27, 50-370, Wrocław, Poland.
| | - Steve Scheiner
- Department of Chemistry and Biochemistry, Utah State University Logan, Utah, 84322-0300, USA.
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2
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Ramasami P, Ford TA. Structural, vibrational and electronic properties of some tetrel-bonded complexes of the fluorinated methanes methyl fluoride, difluoromethane and fluoroform: an ab initio study. J Mol Model 2022; 28:294. [PMID: 36063225 DOI: 10.1007/s00894-022-05285-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2022] [Accepted: 08/19/2022] [Indexed: 10/14/2022]
Abstract
A search has been conducted, by means of ab initio molecular orbital theory, for potential tetrel-bonded complexes formed between the fluorinated methanes methyl fluoride, difluoromethane and fluoroform, and the related hydrides ammonia, water, hydrogen fluoride, phosphine, hydrogen sulphide and hydrogen chloride. Eleven such complexes have been identified, six containing CH3F and five CH2F2. The complexes are typically less strongly bound than their hydrogen-bonded counterparts, and the interaction energies vary in a consistent way with the periodic trend of the electron donors. The intermolecular separations and changes of the relevant intramolecular bond lengths, the wavenumber shifts of the critical vibrational modes and the extents of charge transfer correlate, by and large, with the strengths of interaction.
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Affiliation(s)
- Ponnadurai Ramasami
- Computational Chemistry Group, Department of Chemistry, Faculty of Science, University of Mauritius, Réduit, 80837, Mauritius.,Department of Chemistry, University of South Africa, Private Bag X6, Florida, 1710, South Africa
| | - Thomas A Ford
- School of Chemistry and Physics, University of KwaZulu-Natal, Westville Campus, Private Bag X54001, Durban, 4000, South Africa.
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3
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An NT, Duong NT, Tri NN, Trung NT. Role of O–H⋯O/S conventional hydrogen bonds in considerable C sp2–H blue-shift in the binary systems of acetaldehyde and thioacetaldehyde with substituted carboxylic and thiocarboxylic acids. RSC Adv 2022; 12:35309-35319. [DOI: 10.1039/d2ra05391h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2022] [Accepted: 11/27/2022] [Indexed: 12/13/2022] Open
Abstract
The presence of O–H⋯O/S conventional hydrogen bonds in the complex governs a significant blue shift of Csp2–H bonds.
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Affiliation(s)
- Nguyen Truong An
- Faculty of Natural Sciences, Quy Nhon University, Quy Nhon, Vietnam
| | - Nguyen Thi Duong
- Faculty of Natural Sciences, Quy Nhon University, Quy Nhon, Vietnam
| | - Nguyen Ngoc Tri
- Faculty of Natural Sciences, Quy Nhon University, Quy Nhon, Vietnam
- Laboratory of Computational Chemistry and Modelling (LCCM), Quy Nhon University, Quy Nhon, Vietnam
| | - Nguyen Tien Trung
- Faculty of Natural Sciences, Quy Nhon University, Quy Nhon, Vietnam
- Laboratory of Computational Chemistry and Modelling (LCCM), Quy Nhon University, Quy Nhon, Vietnam
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4
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Bhattacharyya S, Ghosh S, Wategaonkar S. O-H stretching frequency red shifts do not correlate with the dissociation energies in the dimethylether and dimethylsulfide complexes of phenol derivatives. Phys Chem Chem Phys 2021; 23:5718-5739. [PMID: 33662068 DOI: 10.1039/d0cp01589j] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
In this perspective, we present a comprehensive report on the spectroscopic and computational investigations of the hydrogen bonded (H-bonded) complexes of Me2O and Me2S with seven para-substituted H-bond donor phenols. The salient finding was that although the dissociation energies, D0, of the Me2O complexes were consistently higher than those of the analogous Me2S complexes, the red-shifts in phenolic O-H frequencies, Δν(O-H), showed the exactly opposite trend. This is in contravention of the general perception that the red shift in the X-H stretching frequency in the X-HY hydrogen bonded complexes is a reliable indicator of H-bond strength (D0), a concept popularly known as the Badger-Bauer rule. This is also in contrast to the trend reported for the H-bonded complexes of H2S/H2O with several para substituted phenols of different pKa values wherein the oxygen centered hydrogen bonded (OCHB) complexes consistently showed higher Δν(O-H) and D0 compared to those of the analogous sulfur centered hydrogen bonded (SCHB) complexes. Our effort was to understand these intriguing observations based on the spectroscopic investigations of 1 : 1 complexes in combination with a variety of high level quantum chemical calculations. Ab initio calculations at the MP2 level and the DFT calculations using various dispersion corrected density functionals (including DFT-D3) were performed on counterpoise corrected surfaces to compute the dissociation energy, D0, of the H-bonded complexes. The importance of anharmonic frequency computations is underscored as they were able to correctly reproduce the observed trend in the relative OH frequency shifts unlike the harmonic frequency computations. We have attempted to find a unified correlation that would globally fit the observed red shifts in the O-H frequency with the H-bonding strength for the four bases, namely, H2S, H2O, Me2O, and Me2S, in this set of H-bond donors. It was found that the proton affinity normalized Δν(O-H) values scale very well with the H-bond strength.
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Affiliation(s)
- Surjendu Bhattacharyya
- Department of Chemical Sciences, Tata Institute of Fundamental Research, Homi Bhabha Road, Mumbai 400 005, India.
| | - Sanat Ghosh
- Department of Chemical Sciences, Tata Institute of Fundamental Research, Homi Bhabha Road, Mumbai 400 005, India.
| | - Sanjay Wategaonkar
- Department of Chemical Sciences, Tata Institute of Fundamental Research, Homi Bhabha Road, Mumbai 400 005, India.
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5
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Sosulin IS, Tyurin DA, Feldman VI. A hydrogen-bonded CH2F2⋯CO complex: ab initio and matrix isolation study. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2020.128784] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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6
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Sruthi PK, Chandra S, Ramanathan N, Sundararajan K. Unusual blue to red shifting of C-H stretching frequency of CHCl 3 in co-operatively P⋯Cl phosphorus bonded POCl 3-CHCl 3 heterodimers at low temperature inert matrixes. J Chem Phys 2020; 153:174305. [PMID: 33167652 DOI: 10.1063/5.0031162] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022] Open
Abstract
Heterodimers of POCl3-CHCl3 were generated in Ne, Ar, and Kr matrixes at low temperatures and were studied using infrared spectroscopy. The remarkable role of co-operative pentavalent phosphorus bonding in the stabilization of the structure dictated by hydrogen bonding is deciphered. The complete potential energy surface of the heterodimer was scanned by ab initio and density functional theory computational methodologies. The hydrogen bond between the phosphoryl oxygen of POCl3 and C-H group of CHCl3 in heterodimers induces a blue-shift in the C-H stretching frequency within the Ne matrix. However, in Ar and Kr matrixes, the C-H stretching frequency is exceptionally red-shifted in stark contrast with Ne. The plausibility of the Fermi resonance by the C-H stretching vibrational mode with higher order modes in the heterodimers has been eliminated as a possible cause within Ar and Kr matrixes by isotopic substitution (CDCl3) experiments. To evaluate the influence of matrixes as a possible cause of red-shift, self-consistent Iso-density polarized continuum reaction field model was applied. This conveyed the important role of the dielectric matrixes in inducing the fascinating vibrational shift from blue (Ne) to red (Ar and Kr) due to the matrix specific transmutation of the POCl3-CHCl3 structure. The heterodimer produced in the Ne matrix possesses a cyclic structure stabilized by hydrogen bonding with co-operative phosphorus bonding, while in Ar and Kr the generation of an acyclic open structure stabilized solely by hydrogen bonding is promoted. Compelling justification regarding the dispersion force based influence of matrix environments in addition to the well-known dielectric influence is presented.
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Affiliation(s)
- P K Sruthi
- Homi Bhabha National Institute, Materials Chemistry and Metal Fuel Cycle Group, Indira Gandhi Centre for Atomic Research, Kalpakkam 603102, India
| | - Swaroop Chandra
- Homi Bhabha National Institute, Materials Chemistry and Metal Fuel Cycle Group, Indira Gandhi Centre for Atomic Research, Kalpakkam 603102, India
| | - N Ramanathan
- Homi Bhabha National Institute, Materials Chemistry and Metal Fuel Cycle Group, Indira Gandhi Centre for Atomic Research, Kalpakkam 603102, India
| | - K Sundararajan
- Homi Bhabha National Institute, Materials Chemistry and Metal Fuel Cycle Group, Indira Gandhi Centre for Atomic Research, Kalpakkam 603102, India
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7
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Gopi R, Ramanathan N, Sundararajan K. The structure of benzonitrile-water complex as unveiled by matrix isolation infrared spectroscopy: Is it linear or cyclic at low temperatures? J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2020.128636] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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8
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Bhattacharya I, Sadhukhan J, Biswas S, Chakraborty T. Medium-Dependent Crossover from the Red to Blue Shift of the Donor’s Stretching Fundamental in the Binary Hydrogen-Bonded Complexes of CDCl3 with Ethers and Ketones. J Phys Chem A 2020; 124:7259-7270. [DOI: 10.1021/acs.jpca.0c03946] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Indrani Bhattacharya
- School of Chemical Sciences, Indian Association for the Cultivation of Science, Kolkata 700032, India
| | - Jayshree Sadhukhan
- School of Chemical Sciences, Indian Association for the Cultivation of Science, Kolkata 700032, India
- Department of Chemistry, Govt. General Degree College, Singur, Hooghly 712409, West Bengal, India
| | - Souvick Biswas
- School of Chemical Sciences, Indian Association for the Cultivation of Science, Kolkata 700032, India
| | - Tapas Chakraborty
- School of Chemical Sciences, Indian Association for the Cultivation of Science, Kolkata 700032, India
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9
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Sosulin IS, Tyurin DA, Feldman VI. Radiation-Induced Transformation of CHF3···CO to the CF3···CO Complex: Matrix Isolation and Ab Initio Study. J Phys Chem A 2020; 124:1954-1958. [DOI: 10.1021/acs.jpca.9b09240] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Ilya S. Sosulin
- Department of Chemistry, Lomonosov Moscow State University, Moscow 119991, Russia
| | - Daniil A. Tyurin
- Department of Chemistry, Lomonosov Moscow State University, Moscow 119991, Russia
| | - Vladimir I. Feldman
- Department of Chemistry, Lomonosov Moscow State University, Moscow 119991, Russia
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Sarkar S, Sruthi PK, Ramanathan N, Sundararajan K. Strong proton-shared hydrogen bonding in a methyl imidazole⋯HCl complex: evidence from matrix isolation infrared spectroscopy and ab initio computations. NEW J CHEM 2020. [DOI: 10.1039/d0nj00029a] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
Evidence for proton-shared hydrogen bonding is provided in a methyl imidazole⋯HCl complex using matrix isolation infrared spectroscopy and ab initio computations.
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Affiliation(s)
- Shubhra Sarkar
- Materials Chemistry & Metal Fuel Cycle Group
- Homi Bhabha National Institute
- Indira Gandhi Center for Atomic Research
- Kalpakkam.603102
- India
| | - P. K. Sruthi
- Materials Chemistry & Metal Fuel Cycle Group
- Homi Bhabha National Institute
- Indira Gandhi Center for Atomic Research
- Kalpakkam.603102
- India
| | - N. Ramanathan
- Materials Chemistry & Metal Fuel Cycle Group
- Homi Bhabha National Institute
- Indira Gandhi Center for Atomic Research
- Kalpakkam.603102
- India
| | - K. Sundararajan
- Materials Chemistry & Metal Fuel Cycle Group
- Homi Bhabha National Institute
- Indira Gandhi Center for Atomic Research
- Kalpakkam.603102
- India
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11
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12
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Behera B, Das PK. Blue-Shifted Hydrogen Bonding in the Gas Phase CH/D3CN···HCCl3 Complexes. J Phys Chem A 2019; 123:1830-1839. [DOI: 10.1021/acs.jpca.8b12200] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- B. Behera
- Department of Inorganic and Physical Chemistry, Indian Institute of Science, Bangalore 560012, India
| | - Puspendu K. Das
- Department of Inorganic and Physical Chemistry, Indian Institute of Science, Bangalore 560012, India
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13
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Afonin AV, Pavlov DV, Vashchenko AV. Case study of 2-vinyloxypyridine: Quantitative assessment of the intramolecular C H⋯N hydrogen bond energy and its contribution to the one-bond 13C1H coupling constant. J Mol Struct 2019. [DOI: 10.1016/j.molstruc.2018.08.050] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
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14
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Sen S, Patwari GN. Electrostatics and Dispersion in X-H···Y (X = C, N, O; Y = N, O) Hydrogen Bonds and Their Role in X-H Vibrational Frequency Shifts. ACS OMEGA 2018; 3:18518-18527. [PMID: 31458423 PMCID: PMC6644087 DOI: 10.1021/acsomega.8b01802] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/27/2018] [Accepted: 11/19/2018] [Indexed: 06/10/2023]
Abstract
The frequency shifts of donor stretching vibration in X-H···Y (X = C, N, O; Y = N, O) hydrogen-bonded complexes of phenylacetylene, indole, and phenol are linearly correlated with the electrostatic component of the interaction energy. This linear correlation suggests that the electrostatic component, which is the first-order perturbative correction to the stabilization energy, is essentially localized on the X-H group. The linear correlation suggests that the electrostatic tuning rate, which is a measure of the X-H oscillator to undergo shifts upon hydrogen bonding per unit increase in the electrostatic component of the stabilization energy, was found to be in the order of O-H > N-H > C-H. Interestingly, for each of the donor groups, viz., C-H, N-H, and O-H, the vibrational frequency shifts were inversely correlated to the dipole moment of the acceptor separately, which is counterintuitive vis-à-vis the electrostatic component. This implies that extrapolation to zero dipole moment of the acceptor will yield very large shifts in the hydrogen-bonded X-H stretching frequencies. The trends in the variation of the dispersion and exchange-repulsion components and the total interaction energy vis-à-vis frequency shifts of donor stretching vibration are similar for hydrogen-bonded complexes of phenylacetylene, indole, and phenol. Furthermore, it was observed that the vibrational frequency shifts of all of the complexes are linearly correlated with the charge transfer from the filled orbital of the hydrogen acceptor to the vacant antibonding (σ*) orbital of the X-H donor group on the basis of natural bonding orbital calculations.
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Affiliation(s)
| | - G. Naresh Patwari
- Department of Chemistry, Indian Institute of Technology Bombay, Powai, Mumbai 400076, India
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16
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Asfin RE, Melikova SM, Rutkowski KS. The infrared study of fluoroform + methyl fluoride mixtures in argon and nitrogen matrices. Evidence of nonlinear blue-shifting complex formation. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2018; 203:185-194. [PMID: 29864642 DOI: 10.1016/j.saa.2018.05.105] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/10/2018] [Revised: 05/21/2018] [Accepted: 05/27/2018] [Indexed: 06/08/2023]
Abstract
The FTIR spectra of fluoroform + methyl fluoride mixtures trapped in argon and nitrogen matrices are studied at T~10-30 K. Spectroscopic changes observed in the region of the CH stretching mode of fluoroform are typical for weak blue shifting H - bonds of CH⋯F type. The degeneracy lifting effect found on E - type bands of fluoroform interacted with methyl fluoride suggests the complex formation of a nonlinear form. The experimental results are confirmed by ab initio calculations of fluoroform + methyl fluoride based on the second order Møller-Plesset theory of perturbations utilizing advanced basis set. Nonlinear complexes are stabilized by the basic CH⋯F interaction and additionally by van der Waals-type CD⋯FC contacts between deuterated methyl fluoride and fluoroform.
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Affiliation(s)
- R E Asfin
- Department of Physics, Saint Petersburg State University, 7/9 Universitetskaya Nab., 199034 Saint Petersburg, Russian Federation
| | - S M Melikova
- Department of Physics, Saint Petersburg State University, 7/9 Universitetskaya Nab., 199034 Saint Petersburg, Russian Federation
| | - K S Rutkowski
- Department of Physics, Saint Petersburg State University, 7/9 Universitetskaya Nab., 199034 Saint Petersburg, Russian Federation.
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17
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Ramasami P, Ford TA. An ab initio study of some binary complexes containing methyl fluoride and difluoromethane: red-shifting and blue-shifting hydrogen bonds. Mol Phys 2018. [DOI: 10.1080/00268976.2018.1445307] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
Affiliation(s)
- Ponnadurai Ramasami
- Computational Chemistry Group, Department of Chemistry, Faculty of Science, University of Mauritius, Réduit, Mauritius
- Department of Applied Chemistry, University of Johannesburg, Johannesburg, South Africa
| | - Thomas A. Ford
- School of Chemistry and Physics, University of KwaZulu-Natal, Durban, South Africa
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18
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Behera B, Das PK. Blue- and Red-Shifting Hydrogen Bonding: A Gas Phase FTIR and Ab Initio Study of RR'CO···DCCl 3 and RR'S···DCCl 3 Complexes. J Phys Chem A 2018; 122:4481-4489. [PMID: 29683668 DOI: 10.1021/acs.jpca.7b11962] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Blue-shifting H-bonded (C-D···O) complexes between CDCl3 and CH3HCO, (CH3)2CO, and C2H5(CH3)CO, and red-shifting H-bonded (C-D···S) complexes between CDCl3 with (CH3)2S and (C2H5)2S have been identified by Fourier transform infrared spectroscopy in the gas phase at room temperature. With increasing partial pressure of the components, a new band appears in the C-D stretching region of the vibrational spectra. The intensity of this band decreases with an increase in temperature at constant pressure, which provides the basis for identification of the H-bonded bands in the spectrum. The C-D stretching frequency of CDCl3 is blue-shifted by +7.1, +4, and +3.2 cm-1 upon complexation with CH3HCO, (CH3)2CO, and C2H5(CH3)CO, respectively, and red-shifted by -14 and -19.2 cm-1 upon complexation with (CH3)2S and (C2H5)2S, respectively. By using quantum chemical calculations at the MP2/6-311++G** level, we predict the geometry, electronic structural parameters, binding energy, and spectral shift of H-bonded complexes between CDCl3 and two series of compounds named RCOR' (H2CO, CH3HCO, (CH3)2CO, and C2H5(CH3)CO) and RSR' (H2S, CH3HS, (CH3)2S, and (C2H5)2S) series. The calculated and observed spectral shifts follow the same trends. With an increase in basicity of the H-bond acceptor, the C-D bond length increases, force constant decreases, and the frequency shifts to the red from the blue. The potential energy scans of the above complexes are done, which show that electrostatic attraction between electropositive D and electron-rich O/S causes bond elongation and red shift, and the electronic and nuclear repulsions lead to bond contraction and blue shifts. The dominance of the two opposing forces at the equilibrium geometry of the complex determines the nature of the shift, which changes both in magnitude and in direction with the basicity of the hydrogen-bond acceptor.
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Affiliation(s)
- B Behera
- Department of Inorganic and Physical Chemistry , Indian Institute of Science , Bangalore 560012 , India
| | - Puspendu K Das
- Department of Inorganic and Physical Chemistry , Indian Institute of Science , Bangalore 560012 , India
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19
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Asfin R, Rutkowski K, Sałdyka M. Spectroscopic evidence of weak complex formation between N,N-dimethylformamide and fluoroform in the gas phase. J Mol Struct 2018. [DOI: 10.1016/j.molstruc.2018.02.020] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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20
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Sosulin IS, Shiryaeva ES, Tyurin DA, Feldman VI. Matrix Isolation and Ab Initio Study on the CHF3···CO Complex. J Phys Chem A 2018; 122:4042-4047. [DOI: 10.1021/acs.jpca.8b01485] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Ilya S. Sosulin
- Department of Chemistry, Lomonosov Moscow State University, Moscow 119991, Russia
| | | | - Daniil A. Tyurin
- Department of Chemistry, Lomonosov Moscow State University, Moscow 119991, Russia
| | - Vladimir I. Feldman
- Department of Chemistry, Lomonosov Moscow State University, Moscow 119991, Russia
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21
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Banerjee P, Chakraborty T. Weak hydrogen bonds: insights from vibrational spectroscopic studies. INT REV PHYS CHEM 2018. [DOI: 10.1080/0144235x.2018.1419731] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
Affiliation(s)
- Pujarini Banerjee
- Department of Physical Chemistry, Indian Association for the Cultivation of Science, Kolkata, India
| | - Tapas Chakraborty
- Department of Physical Chemistry, Indian Association for the Cultivation of Science, Kolkata, India
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22
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Sarkar S, Ramanathan N, Sundararajan K. Effect of Methyl Substitution on the N–H···O Interaction in Complexes of Pyrrole with Water, Methanol, and Dimethyl Ether: Matrix Isolation Infrared Spectroscopy and ab Initio Computational Studies. J Phys Chem A 2018; 122:2445-2460. [DOI: 10.1021/acs.jpca.8b00023] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Shubhra Sarkar
- Materials Chemistry and Metal Fuel Cycle Group, Indira Gandhi Centre for Atomic Research, Kalpakkam 603 102, India
- Homi Bhabha National Institute, Kalpakkam 603 102, India
| | - N. Ramanathan
- Materials Chemistry and Metal Fuel Cycle Group, Indira Gandhi Centre for Atomic Research, Kalpakkam 603 102, India
- Homi Bhabha National Institute, Kalpakkam 603 102, India
| | - K. Sundararajan
- Materials Chemistry and Metal Fuel Cycle Group, Indira Gandhi Centre for Atomic Research, Kalpakkam 603 102, India
- Homi Bhabha National Institute, Kalpakkam 603 102, India
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23
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Gopi R, Ramanathan N, Sundararajan K. Experimental evidence for the blue-shifted hydrogen-bonded complexes of CHF 3 with π-electron donors. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2017; 181:137-147. [PMID: 28351820 DOI: 10.1016/j.saa.2017.03.048] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/02/2017] [Revised: 03/10/2017] [Accepted: 03/20/2017] [Indexed: 06/06/2023]
Abstract
Blue-shifted hydrogen-bonded complexes of fluoroform (CHF3) with benzene (C6H6) and acetylene (C2H2) have been investigated using matrix isolation infrared spectroscopy and ab initio computations. For CHF3-C6H6 complex, calculations performed at the B3LYP and MP2 levels of theory using 6-311++G (d,p) and aug-cc-pVDZ basis sets discerned two minima corresponding to a 1:1 hydrogen-bonded complex. The global minimum correlated to a structure, where the interaction is between the hydrogen of CHF3 and the π-electrons of C6H6 and a weak local minimum was stabilized through H…F interaction. For the CHF3-C2H2 complex, computation performed at MP2/aug-cc-pVDZ level of theory yielded two minima, corresponding to the cyclic C-H…π complex A (global) and a linear C-H…F (n-σ) complex B (local). Experimentally a blue-shift of 32.3cm-1 and 7.7cm-1 was observed in the ν1 C-H stretching mode of CHF3 sub-molecule in Ar matrix for the 1:1 C-H…π complexes of CHF3 with C6H6 and C2H2 respectively. Natural bond orbital (NBO), Atoms-in-molecule (AIM) and energy decomposition (EDA) analyses were carried out to explain the blue-shifting and the nature of the interaction in these complexes.
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Affiliation(s)
- R Gopi
- Materials Chemistry & Metal Fuel Cycle Group, Indira Gandhi Centre for Atomic Research, Kalpakkam 603102, India; Homi Bhabha National Institute, Kalpakkam 603102, India
| | - N Ramanathan
- Materials Chemistry & Metal Fuel Cycle Group, Indira Gandhi Centre for Atomic Research, Kalpakkam 603102, India
| | - K Sundararajan
- Materials Chemistry & Metal Fuel Cycle Group, Indira Gandhi Centre for Atomic Research, Kalpakkam 603102, India; Homi Bhabha National Institute, Kalpakkam 603102, India.
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24
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Assessment of the Presence and Strength of H-Bonds by Means of Corrected NMR. Molecules 2016; 21:molecules21111426. [PMID: 27801801 PMCID: PMC6274571 DOI: 10.3390/molecules21111426] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2016] [Revised: 10/19/2016] [Accepted: 10/21/2016] [Indexed: 11/30/2022] Open
Abstract
The downfield shift of the NMR signal of the bridging proton in a H-bond (HB) is composed of two elements. The formation of the HB causes charge transfer and polarization that lead to a deshielding. A second factor is the mere presence of the proton-accepting group, whose electron density and response to an external magnetic field induce effects at the position of the bridging proton, exclusive of any H-bonding phenomenon. This second positional shielding must be subtracted from the full observed shift in order to assess the deshielding of the proton caused purely by HB formation. This concept is applied to a number of H-bonded systems, both intramolecular and intermolecular. When the positional shielding is removed, the remaining chemical shift is in much better coincidence with other measures of HB strength.
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25
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Blue-shift of the C-H stretching vibration in CHF3-H2O complex: Matrix isolation infrared spectroscopy and ab initio computations. Chem Phys 2016. [DOI: 10.1016/j.chemphys.2016.07.016] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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26
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Scheiner S. Interpretation of Spectroscopic Markers of Hydrogen Bonds. Chemphyschem 2016; 17:2263-71. [DOI: 10.1002/cphc.201600326] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2016] [Indexed: 11/07/2022]
Affiliation(s)
- Steve Scheiner
- Department of Chemistry and Biochemistry; Utah State University; Logan UT 84322-0300 USA
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27
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Interplay between C–H⋯O, O–H⋯X (X=C, F, Cl) and H–O⋯Y (C, Cl, F) interactions in methane–water and halogen substituted methane–water complexes: Theoretical investigations of structure and energy. COMPUT THEOR CHEM 2016. [DOI: 10.1016/j.comptc.2016.03.004] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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28
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Ramanathan N, Sundararajan K, Vidya K, Jemmis ED. Non-covalent C-Cl…π interaction in acetylene-carbon tetrachloride adducts: Matrix isolation infrared and ab initio computational studies. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2016; 157:69-78. [PMID: 26722673 DOI: 10.1016/j.saa.2015.12.016] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/03/2015] [Revised: 11/23/2015] [Accepted: 12/14/2015] [Indexed: 06/05/2023]
Abstract
Non-covalent halogen-bonding interactions between π cloud of acetylene (C2H2) and chlorine atom of carbon tetrachloride (CCl4) have been investigated using matrix isolation infrared spectroscopy and quantum chemical computations. The structure and the energies of the 1:1 C2H2-CCl4 adducts were computed at the B3LYP, MP2 and M05-2X levels of theory using 6-311++G(d,p) basis set. The computations indicated two minima for the 1:1 C2H2-CCl4 adducts; with the C-Cl…π adduct being the global minimum, where π cloud of C2H2 is the electron donor. The second minimum corresponded to a C-H…Cl adduct, in which C2H2 is the proton donor. The interaction energies for the adducts A and B were found to be nearly identical. Experimentally, both C-Cl…π and C-H…Cl adducts were generated in Ar and N2 matrixes and characterized using infrared spectroscopy. This is the first report on halogen bonded adduct, stabilized through C-Cl…π interaction being identified at low temperatures using matrix isolation infrared spectroscopy. Atoms in Molecules (AIM) and Natural Bond Orbital (NBO) analyses were performed to support the experimental results. The structures of 2:1 ((C2H2)2-CCl4) and 1:2 (C2H2-(CCl4)2) multimers and their identification in the low temperature matrixes were also discussed.
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Affiliation(s)
- N Ramanathan
- Chemistry Group, Indira Gandhi Centre for Atomic Research, Kalpakkam 603 102, India
| | - K Sundararajan
- Chemistry Group, Indira Gandhi Centre for Atomic Research, Kalpakkam 603 102, India.
| | - K Vidya
- School of Chemistry, Indian Institute of Science Education and Research, Thiruvananthapuram, Kerala 695016, India
| | - Eluvathingal D Jemmis
- Department of Inorganic and Physical Chemistry, Indian Institute of Science, Bangalore 560 012, India.
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29
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Zhang YF, Huang RY, Wang JW, Kong XJ. Composition-dependent association behavior in the mixture of isopropanol and trichloromethane: a volumetric, vibration spectroscopic and quantum chemical study. RSC Adv 2015. [DOI: 10.1039/c5ra09071g] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Herein the intermolecular associative behaviors in the binary mixture of isopropanol and trichloromethane have been studied via a combined excess volumetric, vibration spectroscopic and quantum chemical approach.
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Affiliation(s)
- Yu-Feng Zhang
- College of Chemical Engineering
- Beijing University of Chemical Technology
- Beijing 100029
- PR China
| | - Rong-Yi Huang
- Anhui Key Laboratory of Functional Coordination Compounds
- School of Chemistry and Chemical Engineering
- Anqing Normal University
- Anqing 246011
- PR China
| | - Jun-Wei Wang
- Anhui Key Laboratory of Functional Coordination Compounds
- School of Chemistry and Chemical Engineering
- Anqing Normal University
- Anqing 246011
- PR China
| | - Xue-Jun Kong
- Anhui Key Laboratory of Functional Coordination Compounds
- School of Chemistry and Chemical Engineering
- Anqing Normal University
- Anqing 246011
- PR China
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30
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Pandey P. Evidence of blue-shifting N–H⋯N hydrogen bonding despite elongation of the N–H bond. RSC Adv 2015. [DOI: 10.1039/c5ra17309d] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
N–H⋯N hydrogen bonding between pyrrole and N2 results blue shift of νN–H accompanied by an increase in the N–H bond length.
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