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For: Nategholeslam M, Gray CG, Tomberli B. Implementation of the Forward–Reverse Method for Calculating the Potential of Mean Force Using a Dynamic Restraining Protocol. J Phys Chem B 2014;118:14203-14. [DOI: 10.1021/jp504942t] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Number Cited by Other Article(s)
1
Stiles PJ, Gray CG. Improved Hodgkin-Huxley type model for neural action potentials. EUROPEAN BIOPHYSICS JOURNAL : EBJ 2021;50:819-828. [PMID: 34181052 DOI: 10.1007/s00249-021-01547-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/12/2020] [Revised: 05/09/2021] [Accepted: 05/10/2021] [Indexed: 06/13/2023]
2
Cabezas F, Mascayano C. Docking, steered molecular dynamics, and QSAR studies as strategies for studying isoflavonoids as 5-, 12-, and 15-lipoxygenase inhibitors. J Biomol Struct Dyn 2018;37:1511-1519. [PMID: 29624122 DOI: 10.1080/07391102.2018.1461687] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
3
Stock P, Monroe JI, Utzig T, Smith DJ, Shell MS, Valtiner M. Unraveling Hydrophobic Interactions at the Molecular Scale Using Force Spectroscopy and Molecular Dynamics Simulations. ACS NANO 2017;11:2586-2597. [PMID: 28267918 DOI: 10.1021/acsnano.6b06360] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
4
Nategholeslam M, Gray CG, Tomberli B. Stiff Spring Approximation Revisited: Inertial Effects in Nonequilibrium Trajectories. J Phys Chem B 2017;121:391-403. [DOI: 10.1021/acs.jpcb.6b08701] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
5
Sprenger KG, Pfaendtner J. Strong Electrostatic Interactions Lead to Entropically Favorable Binding of Peptides to Charged Surfaces. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2016;32:5690-5701. [PMID: 27181161 DOI: 10.1021/acs.langmuir.6b01296] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
6
Zhang Z, Santos AP, Zhou Q, Liang L, Wang Q, Wu T, Franzen S. Steered molecular dynamics study of inhibitor binding in the internal binding site in dehaloperoxidase-hemoglobin. Biophys Chem 2016;211:28-38. [DOI: 10.1016/j.bpc.2016.01.003] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2015] [Revised: 12/24/2015] [Accepted: 01/12/2016] [Indexed: 10/22/2022]
7
Atomic resolution probe for allostery in the regulatory thin filament. Proc Natl Acad Sci U S A 2016;113:3257-62. [PMID: 26957598 DOI: 10.1073/pnas.1519541113] [Citation(s) in RCA: 50] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]  Open
8
Neale C, Pomès R. Sampling errors in free energy simulations of small molecules in lipid bilayers. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 2016;1858:2539-2548. [PMID: 26952019 DOI: 10.1016/j.bbamem.2016.03.006] [Citation(s) in RCA: 75] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/17/2015] [Revised: 03/01/2016] [Accepted: 03/02/2016] [Indexed: 12/14/2022]
9
Tchaicheeyan O, Meirovitch E. Polar Versus Non-polar Local Ordering at Mobile Sites in Proteins: Slowly Relaxing Local Structure Analysis of (15)N Relaxation in the Third Immunoglobulin-Binding Domain of Streptococcal Protein G. J Phys Chem B 2016;120:386-95. [PMID: 26731631 DOI: 10.1021/acs.jpcb.5b10244] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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