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Mitchell SM, Heise RM, Murray ME, Lambo DJ, Daso RE, Banerjee IA. An investigation of binding interactions of tumor-targeted peptide conjugated polyphenols with the kinase domain of ephrin B4 and B2 receptors. Mol Divers 2024; 28:817-849. [PMID: 36847923 PMCID: PMC9969393 DOI: 10.1007/s11030-023-10621-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2022] [Accepted: 02/02/2023] [Indexed: 03/01/2023]
Abstract
Recent studies have shown that Ephrin receptors may be upregulated in several types of cancers including breast, ovarian and endometrial cancers, making them a target for drug design. In this work, we have utilized a target-hopping approach to design new natural product-peptide conjugates and examined their interactions with the kinase-binding domain of EphB4 and EphB2 receptors. The peptide sequences were generated through point mutations of the known EphB4 antagonist peptide TNYLFSPNGPIA. Their anticancer properties and secondary structures were analyzed computationally. Conjugates of most optimum of peptides were then designed by binding the N-terminal of the peptides with the free carboxyl group of the polyphenols sinapate, gallate and coumarate, which are known for their inherent anticancer properties. To investigate if these conjugates have a potential to bind to the kinase domain, we carried out docking studies and MMGBSA free energy calculations of the trajectories based on the molecular dynamics simulations, with both the apo and the ATP bound kinase domains of both receptors. In most cases binding interactions occurred within the catalytic loop region, while in some cases the conjugates were found to spread out across the N-lobe and the DFG motif region. The conjugates were further tested for prediction of pharmacokinetic properties using ADME studies. Our results indicated that the conjugates were lipophilic and MDCK permeable with no CYP interactions. These findings provide an insight into the molecular interactions of these peptides and conjugates with the kinase domain of the EphB4 and EphB2 receptor. As a proof of concept, we synthesized and carried out SPR analysis with two of the conjugates (gallate-TNYLFSPNGPIA and sinapate-TNYLFSPNGPIA). Results indicated that the conjugates showed higher binding with the EphB4 receptor and minimal binding to EphB2 receptor. Sinapate-TNYLFSPNGPIA showed inhibitory activity against EphB4. These studies reveal that some of the conjugates may be developed for further investigation into in vitro and in vivo studies and potential development as therapeutics.
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Affiliation(s)
- Saige M Mitchell
- Department of Chemistry, Fordham University, 441 E. Fordham Rd, Bronx, NY, 10458, USA
| | - Ryan M Heise
- Department of Chemistry, Fordham University, 441 E. Fordham Rd, Bronx, NY, 10458, USA
| | - Molly E Murray
- Department of Chemistry, Fordham University, 441 E. Fordham Rd, Bronx, NY, 10458, USA
| | - Dominic J Lambo
- Department of Chemistry, Fordham University, 441 E. Fordham Rd, Bronx, NY, 10458, USA
| | - Rachel E Daso
- Department of Chemistry, Fordham University, 441 E. Fordham Rd, Bronx, NY, 10458, USA
| | - Ipsita A Banerjee
- Department of Chemistry, Fordham University, 441 E. Fordham Rd, Bronx, NY, 10458, USA.
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2
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Al Hassan MK, Nasser MS, Hussein IA, Ba-Abbad M, Khan I. Computational study on organochlorine insecticides extraction using ionic liquids. Heliyon 2024; 10:e25931. [PMID: 38404846 PMCID: PMC10884451 DOI: 10.1016/j.heliyon.2024.e25931] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2023] [Revised: 01/28/2024] [Accepted: 02/05/2024] [Indexed: 02/27/2024] Open
Abstract
Insecticides pose hazardous environmental effects and can enter the food chain and contaminate water resources. Ionic liquids (ILs) have recently drawn much interest as environmentally friendly solvents and have been an efficient choice for extracting pesticides because of their outstanding thermophysical characteristics and tunable nature. In this study, ILs were screened using COSMO-RS (Conductor-like Screening Model for Real Solvents) to extract organochlorine insecticides from water at 289 K. A total of 165 ILs, a combination of 33 cations with five anions, were screened by COSMO-RS to predict the selectivity and capacity of the organochlorine insecticides at infinite dilution. The Organochlorine insecticide compounds, such as benzene hexachloride (BHC), Heptachlor, Aldrin, Gamma-Chlordane (γ-Chlordane), Endrin, and Methoxychlor are selected for this study. Charge density profiles show that Endrin and Methoxychlor compounds are strong H-bond acceptors and weak H-bond donors, while the rest of the compounds are H-bond donors with no H-bond acceptor potential. Moreover, it has been shown that ILs composed of halides and heteroatomic anions in conjunction with cations have enhanced selectivity and capacity for insecticides. Moreover, the hydrophobic phosphonium-based ILs have enhanced selectivity and capacity for insecticides. In BHC extraction, the selectivity of 1,3-dimethyl-imidazolium chloride was found to be the highest at 1074.06, whereas 2-hydroxyethyl trimethyl ammonium chloride exhibited the highest capacity being 84.0.1,3-dimethyl-imidazolium chloride exhibits the highest performance index, which is 57064.77. In addition, the ILs that have been chosen are well-recognized as environmentally friendly and very effective solvents to extract insecticides from water. As a result, this study evaluated that ILs could be promising solvents that may be further developed for the extraction of insecticides from contaminated water.
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Affiliation(s)
- Mohammad K. Al Hassan
- Gas Processing Center, College of Engineering, P.O. Box 2713, Qatar University, Doha, Qatar
| | - Mustafa S. Nasser
- Gas Processing Center, College of Engineering, P.O. Box 2713, Qatar University, Doha, Qatar
- Chemical Engineering Department, College of Engineering, P.O. Box 2713, Qatar University, Doha, Qatar
| | - Ibnelwaleed A. Hussein
- Gas Processing Center, College of Engineering, P.O. Box 2713, Qatar University, Doha, Qatar
- Chemical Engineering Department, College of Engineering, P.O. Box 2713, Qatar University, Doha, Qatar
| | - Muneer Ba-Abbad
- Gas Processing Center, College of Engineering, P.O. Box 2713, Qatar University, Doha, Qatar
| | - Imran Khan
- Department of Chemistry, College of Science, Sultan Qaboos University, Muscat, Oman
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Song Z, Chen J, Cheng J, Chen G, Qi Z. Computer-Aided Molecular Design of Ionic Liquids as Advanced Process Media: A Review from Fundamentals to Applications. Chem Rev 2024; 124:248-317. [PMID: 38108629 DOI: 10.1021/acs.chemrev.3c00223] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2023]
Abstract
The unique physicochemical properties, flexible structural tunability, and giant chemical space of ionic liquids (ILs) provide them a great opportunity to match different target properties to work as advanced process media. The crux of the matter is how to efficiently and reliably tailor suitable ILs toward a specific application. In this regard, the computer-aided molecular design (CAMD) approach has been widely adapted to cover this family of high-profile chemicals, that is, to perform computer-aided IL design (CAILD). This review discusses the past developments that have contributed to the state-of-the-art of CAILD and provides a perspective about how future works could pursue the acceleration of the practical application of ILs. In a broad context of CAILD, key aspects related to the forward structure-property modeling and reverse molecular design of ILs are overviewed. For the former forward task, diverse IL molecular representations, modeling algorithms, as well as representative models on physical properties, thermodynamic properties, among others of ILs are introduced. For the latter reverse task, representative works formulating different molecular design scenarios are summarized. Beyond the substantial progress made, some future perspectives to move CAILD a step forward are finally provided.
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Affiliation(s)
- Zhen Song
- State Key laboratory of Chemical Engineering, School of Chemical Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, China
| | - Jiahui Chen
- State Key laboratory of Chemical Engineering, School of Chemical Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, China
| | - Jie Cheng
- State Key laboratory of Chemical Engineering, School of Chemical Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, China
| | - Guzhong Chen
- State Key laboratory of Chemical Engineering, School of Chemical Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, China
| | - Zhiwen Qi
- State Key laboratory of Chemical Engineering, School of Chemical Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, China
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4
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Wang D, Zhang M, Law CL, Zhang L. Natural deep eutectic solvents for the extraction of lentinan from shiitake mushroom: COSMO-RS screening and ANN-GA optimizing conditions. Food Chem 2024; 430:136990. [PMID: 37536067 DOI: 10.1016/j.foodchem.2023.136990] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2023] [Revised: 06/19/2023] [Accepted: 07/23/2023] [Indexed: 08/05/2023]
Abstract
Using natural deep eutectic solvents (NDES) for green extraction of lentinan from shiitake mushroom is a high-efficiency method. However, empirical and trial-and-error methods commonly used to select suitable NDES are unconvincing and time-consuming. Conductor-like screening model for realistic solvation (COSMO-RS) is helpful for the priori design of NDES by predicting the solubility of biomolecules. In this study, 372 NDES were used to evaluate lentinan dissolution capability via COSMO-RS. The results showed that the solvent formed by carnitine (15 wt%), urea (40.8 wt%), and water (44.2 wt%) exhibited the best performance for the extraction of lentinan. In the extraction stage, an artificial neural network coupled with genetic algorithm (ANN-GA) was developed to optimize the extraction conditions and to analyze their interaction effects on lentinan content. Therefore, COSMO-RS and ANN-GA can be used as powerful tools for solvent screening and extraction process optimization, which can be extended to various bioactive substance extraction.
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Affiliation(s)
- Dayuan Wang
- State Key Laboratory of Food Science and Resources, Jiangnan University, 214122 Wuxi, Jiangsu, China; Jiangsu Province International Joint Laboratory on Fresh Food Smart Processing and Quality Monitoring, Jiangnan University, 214122 Wuxi, Jiangsu, China
| | - Min Zhang
- State Key Laboratory of Food Science and Resources, Jiangnan University, 214122 Wuxi, Jiangsu, China; China General Chamber of Commerce Key Laboratory on Fresh Food Processing & Preservation, Jiangnan University, 214122 Wuxi, Jiangsu, China.
| | - Chung Lim Law
- Department of Chemical and Environmental Engineering, University of Nottingham Malaysia, Semenyih 43500, Selangor, Malaysia
| | - Lujun Zhang
- Shandong Qihe Biotechnology Co., Ltd, 255022 Zibo, China
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Goncalves BG, Banerjee IA. A computational and laboratory approach for the investigation of interactions of peptide conjugated natural terpenes with EpHA2 receptor. J Mol Model 2023; 29:204. [PMID: 37291458 DOI: 10.1007/s00894-023-05596-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2022] [Accepted: 05/17/2023] [Indexed: 06/10/2023]
Abstract
CONTEXT Ephrin type A receptor 2 (EphA2) is a well-known drug target for cancer treatment due to its overexpression in numerous types of cancers. Thus, it is crucial to determine the binding interactions of this receptor with both the ligand-binding domain (LBD) and the kinase-binding domain (KBD) through a targeted approach in order to modulate its activity. In this work, natural terpenes with inherent anticancer properties were conjugated with short peptides YSAYP and SWLAY that are known to bind to the LBD of EphA2 receptor. We examined the binding interactions of six terpenes (maslinic acid, levopimaric acid, quinopimaric acid, oleanolic, polyalthic, and hydroxybetulinic acid) conjugated to the above peptides with the ligand-binding domain (LBD) of EphA2 receptor computationally. Additionally, following the "target-hopping approach," we also examined the interactions of the conjugates with the KBD. Our results indicated that most of the conjugates showed higher binding interactions with the EphA2 kinase domain compared to LBD. Furthermore, the binding affinities of the terpenes increased upon conjugating the peptides with the terpenes. In order to further investigate the specificity toward EphA2 kinase domain, we also examined the binding interactions of the terpenes conjugated to VPWXE (x = norleucine), as VPWXE has been shown to bind to other RTKs. Our results indicated that the terpenes conjugated to SWLAY in particular showed high efficacy toward binding to the KBD. We also designed conjugates where in the peptide portion and the terpenes were separated by a butyl (C4) group linker to examine if the binding interactions could be enhanced. Docking studies showed that the conjugates with linkers had enhanced binding with the LBD compared to those without linkers, though binding remained slightly higher without linkers toward the KBD. As a proof of concept, maslinate and oleanolate conjugates of each of the peptides were then tested with F98 tumor cells which are known to overexpress EphA2 receptor. Results indicated that the oleanolate-amido-SWLAY conjugates were efficacious in reducing the cell proliferation of the tumor cells and may be potentially developed and further studied for targeting tumor cells overexpressing the EphA2 receptor. To test if these conjugates could bind to the receptor and potentially function as kinase inhibitors, we conducted SPR analysis and ADP-Glo assay. Our results indicated that OA conjugate with SWLAY showed the highest inhibition. METHODS Docking studies were carried out using AutoDock Vina, v.1.2.0; Molecular Dynamics and MMGBSA calculations were carried out through Schrodinger Software DESMOND.
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Affiliation(s)
- Beatriz G Goncalves
- Department of Chemistry, Fordham University, 441 East Fordham Road, Bronx, NY, 10458, USA
| | - Ipsita A Banerjee
- Department of Chemistry, Fordham University, 441 East Fordham Road, Bronx, NY, 10458, USA.
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Lambo DJ, Lebedenko CG, McCallum PA, Banerjee IA. Molecular dynamics, MMGBSA, and docking studies of natural products conjugated to tumor-targeted peptide for targeting BRAF V600E and MERTK receptors. Mol Divers 2023; 27:389-423. [PMID: 35505173 DOI: 10.1007/s11030-022-10430-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2022] [Accepted: 03/31/2022] [Indexed: 02/08/2023]
Abstract
Recent studies have revealed that MERTK and BRAF V600E receptors have been found to be over-expressed in several types of cancers including melanoma, making these receptors targets for drug design. In this study, we have designed novel peptide conjugates with the natural products vanillic acid, thiazole-2-carboxylic acid, cinnamic acid, theanine, and protocatechuic acid. Each of these compounds was conjugated with the tumor targeting peptide sequence TAASGVRSMH, known to bind to NG2 and target tumor neovasculature. We examined their binding affinities and stability with MERTK and BRAF V600E receptors using molecular docking and molecular dynamics studies. Compared to the neat compounds, the peptide conjugates displayed higher binding affinity toward both receptors. In the case of MERTK, the most stable complexes were formed with di-theaninate-peptide, vanillate-peptide, and thiazole-2-amido peptide conjugates and binding occurred in the hinge region. Additionally, it was discovered that the peptide alone also had high binding ability and stability with the MERTK receptor. In the case of BRAF V600E, the peptide conjugates of protocatechuate, vanillate and thiazole-2-amido peptide conjugates showed the formation of the most stable complexes and binding occurred in the ATP binding cleft. Further analysis revealed that the number of hydrogen bonds and hydrophobic interactions played a critical role in enhanced stability of the complexes. Docking studies also revealed that binding affinities for NG2 were similar to MERTK and higher for BRAF V600E. MMGBSA studies of the trajectories revealed that the protocatechuate-peptide conjugate showed the highest binding energy with BRAF V600E while the peptide-TAASGVRSMH showed the highest binding energy with MERTK. ADME studies revealed that each of the compounds showed medium to high permeability toward MDCK cells and were not hERG blockers. Furthermore, the conjugates were not CYP inhibitors or substrates, but they were found to be Pgp substrates. Our results indicated that the protocatechuate-TAASGVRSMH, thiazole-2-amido-TAASGVRSMH, and vanillate-TAASGVRSMH conjugates may be furthered developed for in vitro and in vivo studies as novel tumor targeting compounds for tumor cells over-expressing BRAF V600E, while di-theaninate-amido-TAASGVRSMH and thiazole-2-amido-TAASGVRSMH conjugates may be developed for targeting MERTK receptors. These studies provide insight into the molecular interactions of natural product-peptide conjugates and their potential for binding to and targeting MERTK and BRAF V600E receptors in developing new therapeutics for targeting cancer.
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Affiliation(s)
- Dominic J Lambo
- Department of Chemistry, Fordham University, 441 E. Fordham Rd, Bronx, NY, 10458, USA
| | - Charlotta G Lebedenko
- Department of Chemistry, Fordham University, 441 E. Fordham Rd, Bronx, NY, 10458, USA
| | - Paige A McCallum
- Department of Chemistry, Fordham University, 441 E. Fordham Rd, Bronx, NY, 10458, USA
| | - Ipsita A Banerjee
- Department of Chemistry, Fordham University, 441 E. Fordham Rd, Bronx, NY, 10458, USA.
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Mohan M, Simmons BA, Sale KL, Singh S. Multiscale molecular simulations for the solvation of lignin in ionic liquids. Sci Rep 2023; 13:271. [PMID: 36609448 PMCID: PMC9822913 DOI: 10.1038/s41598-022-25372-2] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2022] [Accepted: 11/29/2022] [Indexed: 01/09/2023] Open
Abstract
Lignin, the second most abundant biopolymer found in nature, has emerged as a potential source of sustainable fuels, chemicals, and materials. Finding suitable solvents, as well as technologies for efficient and affordable lignin dissolution and depolymerization, are major obstacles in the conversion of lignin to value-added products. Certain ionic liquids (ILs) are capable of dissolving and depolymerizing lignin but designing and developing an effective IL for lignin dissolution remains quite challenging. To address this issue, the COnductor-like Screening MOdel for Real Solvents (COSMO-RS) model was used to screen 5670 ILs by computing logarithmic activity coefficients (ln(γ)) and excess enthalpies (HE) of lignin, respectively. Based on the COSMO-RS computed thermodynamic properties (ln(γ) and HE) of lignin, anions such as acetate, methyl carbonate, octanoate, glycinate, alaninate, and lysinate in combination with cations like tetraalkylammonium, tetraalkylphosphonium, and pyridinium are predicted to be suitable solvents for lignin dissolution. The dissolution properties such as interaction energy between anion and cation, viscosity, Hansen solubility parameters, dissociation constants, and Kamlet-Taft parameters of selected ILs were evaluated to assess their propensity for lignin dissolution. Furthermore, molecular dynamics (MD) simulations were performed to understand the structural and dynamic properties of tetrabutylammonium [TBA]+-based ILs and lignin mixtures and to shed light on the mechanisms involved in lignin dissolution. MD simulation results suggested [TBA]+-based ILs have the potential to dissolve lignin because of their higher contact probability and interaction energies with lignin when compared to cholinium lysinate.
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Affiliation(s)
- Mood Mohan
- grid.451372.60000 0004 0407 8980Deconstruction Division, Joint BioEnergy Institute, 5885 Hollis Street, Emeryville, CA 94608 USA ,grid.474523.30000000403888279Bioresource and Environmental Security Department, Sandia National Laboratories, 7011 East Avenue, Livermore, CA 94551 USA
| | - Blake A. Simmons
- grid.451372.60000 0004 0407 8980Deconstruction Division, Joint BioEnergy Institute, 5885 Hollis Street, Emeryville, CA 94608 USA ,grid.184769.50000 0001 2231 4551Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA 94720 USA
| | - Kenneth L. Sale
- grid.451372.60000 0004 0407 8980Deconstruction Division, Joint BioEnergy Institute, 5885 Hollis Street, Emeryville, CA 94608 USA ,grid.474523.30000000403888279Department of Computational Biology and Biophysics, Sandia National Laboratories, 7011 East Avenue, Livermore, CA 94551 USA
| | - Seema Singh
- grid.451372.60000 0004 0407 8980Deconstruction Division, Joint BioEnergy Institute, 5885 Hollis Street, Emeryville, CA 94608 USA ,grid.474523.30000000403888279Bioresource and Environmental Security Department, Sandia National Laboratories, 7011 East Avenue, Livermore, CA 94551 USA
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8
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Kataoka T, Hao Y, Hung YC, Orita Y, Shimoyama Y. Prediction of biphasic separation in CO 2 absorption using a molecular surface information-based machine learning model. ENVIRONMENTAL SCIENCE. PROCESSES & IMPACTS 2022; 24:2409-2418. [PMID: 36374193 DOI: 10.1039/d2em00253a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
Carbon dioxide capture technologies have become a focus to overcome global warming. Biphasic absorbents are one of the promising approaches for energy-saving CO2 capture processes. These biphasic absorbents are mainly composed of a mixed solvent composed of alkanolamine and organic solvents like glycol ether or alcohol. However, screening experiments of the mixed-solvent absorbents are required to search for biphasic absorbents due to their complicated phase behavior. In this work, we developed a prediction method for the phase states of the mixed-solvent absorbents using a quantum calculation and machine learning models, including random forest, logistic regression, and support vector machine models. There are 61 mixed-solvent absorbents containing alkanolamine/glycol ether or alcohol in the dataset. The machine learning models successfully predicted the phase states of the mixed-solvent absorbents before and after CO2 absorption with accuracies of more than 90%. Furthermore, we analyzed the contributions of explanatory variables for prediction using the learned model. As a result, we found that molecular surface charge of the amine species is more important than those of the other organic solvents to determine the phase behaviors during CO2 absorption.
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Affiliation(s)
- Taishi Kataoka
- Department of Chemical Science and Engineering, Tokyo Institute of Technology, 2-12-1 S1-33, Ookayama, Meguro-ku, Tokyo 152-8550, Japan.
| | - Yingquan Hao
- Department of Chemical Science and Engineering, Tokyo Institute of Technology, 2-12-1 S1-33, Ookayama, Meguro-ku, Tokyo 152-8550, Japan.
| | - Ying Chieh Hung
- Department of Chemical Science and Engineering, Tokyo Institute of Technology, 2-12-1 S1-33, Ookayama, Meguro-ku, Tokyo 152-8550, Japan.
| | - Yasuhiko Orita
- Department of Chemical Science and Engineering, Tokyo Institute of Technology, 2-12-1 S1-33, Ookayama, Meguro-ku, Tokyo 152-8550, Japan.
| | - Yusuke Shimoyama
- Department of Chemical Science and Engineering, Tokyo Institute of Technology, 2-12-1 S1-33, Ookayama, Meguro-ku, Tokyo 152-8550, Japan.
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Efficiency development of surface tension for different ionic liquids through novel model of Machine learning Technique: Application of in-thermal engineering. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2022.120391] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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10
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Lei Y, Yu Z, Wei Z, Liu X, Yu H, Liang X, Kontogeorgis GM, Chen Y. Structure optimization of task-specific ionic liquids targeting low-carbon-emission ethylbenzene production. Sep Purif Technol 2022. [DOI: 10.1016/j.seppur.2022.122827] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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11
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López-Porfiri P, Gorgojo P, Gonzalez-Miquel M. Solubility Study and Thermodynamic Modelling of Succinic Acid and Fumaric Acid in Bio-based Solvents. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2022.120836] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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12
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Choudhary H, Pidatala VR, Mohan M, Simmons BA, Gladden JM, Singh S. Renewable Schiff-Base Ionic Liquids for Lignocellulosic Biomass Pretreatment. Molecules 2022; 27:molecules27196278. [PMID: 36234813 PMCID: PMC9573442 DOI: 10.3390/molecules27196278] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2022] [Revised: 09/15/2022] [Accepted: 09/20/2022] [Indexed: 11/24/2022] Open
Abstract
Growing interest in sustainable sources of chemicals and energy from renewable and reliable sources has stimulated the design and synthesis of renewable Schiff-base (iminium) ionic liquids (ILs) to replace fossil-derived ILs. In this study, we report on the synthesis of three unique iminium-acetate ILs from lignin-derived aldehyde for a sustainable “future” lignocellulosic biorefinery. The synthesized ILs contained only imines or imines along with amines in their structure; the ILs with only imines group exhibited better pretreatment efficacy, achieving >89% sugar release. Various analytical and computational tools were employed to understand the pretreatment efficacy of these ILs. This is the first study to demonstrate the ease of synthesis of these renewable ILs, and therefore, opens the door for a new class of “Schiff-base ILs” for further investigation that could also be designed to be task specific.
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Affiliation(s)
- Hemant Choudhary
- Deconstruction Division, Joint BioEnergy Institute, 5885 Hollis Street, Emeryville, CA 94608, USA
- Department of Bioresource and Environmental Security, Sandia National Laboratories, 7011 East Avenue, Livermore, CA 94551, USA
| | - Venkataramana R. Pidatala
- Deconstruction Division, Joint BioEnergy Institute, 5885 Hollis Street, Emeryville, CA 94608, USA
- Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA 94720, USA
| | - Mood Mohan
- Deconstruction Division, Joint BioEnergy Institute, 5885 Hollis Street, Emeryville, CA 94608, USA
- Department of Bioresource and Environmental Security, Sandia National Laboratories, 7011 East Avenue, Livermore, CA 94551, USA
| | - Blake A. Simmons
- Deconstruction Division, Joint BioEnergy Institute, 5885 Hollis Street, Emeryville, CA 94608, USA
- Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA 94720, USA
| | - John M. Gladden
- Deconstruction Division, Joint BioEnergy Institute, 5885 Hollis Street, Emeryville, CA 94608, USA
- Department of Biomaterials and Biomanufacturing, Sandia National Laboratories, 7011 East Avenue, Livermore, CA 94551, USA
| | - Seema Singh
- Deconstruction Division, Joint BioEnergy Institute, 5885 Hollis Street, Emeryville, CA 94608, USA
- Department of Bioresource and Environmental Security, Sandia National Laboratories, 7011 East Avenue, Livermore, CA 94551, USA
- Correspondence:
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13
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Zhao J, Zhou G, Fang T, Ying S, Liu X. Screening ionic liquids for dissolving hemicellulose by COSMO-RS based on the selective model. RSC Adv 2022; 12:16517-16529. [PMID: 35754873 PMCID: PMC9169070 DOI: 10.1039/d2ra02001g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2022] [Accepted: 05/20/2022] [Indexed: 11/21/2022] Open
Abstract
The utilization of biomass resources has attracted more and more attention due to the consumption of non-renewable resources. Compared with cellulose and lignin, hemicellulose has been less studied. Some ionic liquids (ILs) have been proved to be excellent solvents for lignocellulosic pretreatment. However, screening of more efficient ILs is difficult due to numerous possible ILs. Computational chemistry has been proved effective in solvent screening, but a precise model is indispensable. In this work, we focused on building several appropriate models and selected the most suitable one. According to the structure of hemicellulose, six hemicellulose models were constructed and the mid-dimer of the xylan chain hemicellulose (MDXC) model was proved to be the best compared with the reported experimental results. Based on the MDXC model, 1368 ILs were screened to evaluate their ability to dissolve hemicellulose by Conductor-like Screening Model for Real Solvents (COSMO-RS). The activity coefficient (γ), excess enthalpy (HE), and σ-profile indicated that the hydrogen-bond (H-bond) played a vital role in the dissolution of hemicellulose. Anions played a more critical role than cations, where small anions with H-bond acceptor groups could enhance the molecular interactions with hemicellulose. This work provided a thermodynamic understanding of hemicellulose and IL solvent systems. It highlights the importance of building appropriate solute models, which may be necessary to predict of the other thermodynamic properties in the future.
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Affiliation(s)
- Jinzheng Zhao
- School of Chemistry and Chemical Engineering, Qingdao University 308 Ningxia Road Shinan District Qingdao Shandong 266071 P. R. China
| | - Guohui Zhou
- School of Chemistry and Chemical Engineering, Qingdao University 308 Ningxia Road Shinan District Qingdao Shandong 266071 P. R. China
| | - Timing Fang
- School of Chemistry and Chemical Engineering, Qingdao University 308 Ningxia Road Shinan District Qingdao Shandong 266071 P. R. China
| | - Shengzhe Ying
- School of Chemistry and Chemical Engineering, Qingdao University 308 Ningxia Road Shinan District Qingdao Shandong 266071 P. R. China
| | - Xiaomin Liu
- School of Chemistry and Chemical Engineering, Qingdao University 308 Ningxia Road Shinan District Qingdao Shandong 266071 P. R. China
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14
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Azhar FNA, Taha MF, Mat Ghani SM, Ruslan MSH, Md Yunus NM. Experimental and Mathematical Modelling of Factors Influencing Carbon Dioxide Absorption into the Aqueous Solution of Monoethanolamine and 1-Butyl-3-methylimidazolium Dibutylphosphate Using Response Surface Methodology (RSM). Molecules 2022; 27:molecules27061779. [PMID: 35335143 PMCID: PMC8953549 DOI: 10.3390/molecules27061779] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2021] [Revised: 12/31/2021] [Accepted: 01/14/2022] [Indexed: 12/10/2022] Open
Abstract
This paper investigated the solubility of carbon dioxide (CO2) in an aqueous solution of monoethanolamine (MEA) and 1-butyl-3-methylimidazolium dibutylphosphate ((BMIM)(DBP)) ionic liquid (IL) hybrid solvents. Aqueous solutions of MEA-(BMIM)(DBP) hybrid solvents containing different concentrations of (BMIM)(DBP) were prepared to exploit the amine’s reactive nature, combined with the IL’s non-volatile nature for CO2 absorption. Response surface methodology (RSM) based on central composite design (CCD) was used to design the CO2 solubility experiments and to investigate the effects of three independent factors on the solubility of CO2 in the aqueous MEA-(BMIM)(DBP) hybrid solvent. The three independent factors were the concentration of (BMIM)(DBP) (0–20 wt.%), temperature (30 °C–60 °C) and pressure of CO2 (2–30 bar). The experimental data were fitted to a quadratic model with a coefficient of determination (R2) value of 0.9791. The accuracy of the developed model was confirmed through additional experiments where the experimental values were found to be within the 95% confidence interval. From the RSM-generated model, the optimum conditions for CO2 absorption in aqueous 30 wt% MEA-(BMIM)(DBP) were 20 wt% of (BMIM)(DBP), a temperature of 41.1 °C and a pressure of 30 bar.
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Affiliation(s)
- Fatin Nor Arissa Azhar
- Fundamental and Applied Science Department, Universiti Teknologi PETRONAS, Seri Iskandar 32610, Malaysia;
| | - Mohd Faisal Taha
- Fundamental and Applied Science Department, Universiti Teknologi PETRONAS, Seri Iskandar 32610, Malaysia;
- Centre of Research in Ionic Liquids, Universiti Teknologi PETRONAS, Seri Iskandar 32610, Malaysia; (S.M.M.G.); (N.M.M.Y.)
- Correspondence: ; Tel.: +60-05-368-7660
| | - Siti Musliha Mat Ghani
- Centre of Research in Ionic Liquids, Universiti Teknologi PETRONAS, Seri Iskandar 32610, Malaysia; (S.M.M.G.); (N.M.M.Y.)
| | | | - Noor Mona Md Yunus
- Centre of Research in Ionic Liquids, Universiti Teknologi PETRONAS, Seri Iskandar 32610, Malaysia; (S.M.M.G.); (N.M.M.Y.)
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15
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Qin C, Gao H, Liu X, Li X, Xie Y, Bai Y, Nie Y. The dissolution of human hair using ionic liquids through COSMO-RS predication and experimental verification. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2021.118094] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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16
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Yu K, Ding WL, Lu Y, Wang Y, Liu Y, Liu G, Huo F, He H. Ionic liquids screening for lignin dissolution: COSMO-RS simulations and experimental characterization. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2021.118007] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
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17
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Molecular dynamics simulations, docking and MMGBSA studies of newly designed peptide-conjugated glucosyloxy stilbene derivatives with tumor cell receptors. Mol Divers 2022; 26:2717-2743. [PMID: 35037187 DOI: 10.1007/s11030-021-10354-9] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2021] [Accepted: 11/17/2021] [Indexed: 10/19/2022]
Abstract
In this work, for the first time, we designed derivatives of beta-D-glucosyloxy-3-hydroxy-trans-stiblene-2-carboxylic acid (GHS), by conjugating GHS with tumor targeting peptides RPARPAR and GGKRPAR to target over-expressed receptors in tumor cells. The sequences RPARPAR and GGKRPAR are known to target the neuropilin1 (NRP1) receptor due to the C-terminal Arg domain; however, their effectiveness has never been examined with other commonly over-expressed receptors in tumor cells, particularly of chronic lymphocytic leukemia that include integrin α1β1 and CD22. By conjugating these peptides with GHS, which is known for its inherent anti-cancer properties, the goal is to further enhance tumor cell targeting by developing compounds that can target multiple receptors. The physicochemical properties of the conjugates and individual peptides were analyzed using Turbomole and COSMOthermX20 in order to determine their hydrogen bond accepting and donating capabilities. The web server POCASA was used in order to determine the surface cavities and binding pockets of the three receptors. To explore the binding affinities, we conducted molecular docking studies with the peptides and the conjugates with each of the receptors. After molecular docking, the complexes were analyzed using Protein-Ligand Interaction Profiler to determine the types of interactions involved. Molecular dynamics simulation studies were conducted to explore the stability of the receptor-ligand complexes. Our results indicated that in most cases the conjugates showed higher binding and stability with the receptors. Additionally, highly stable complexes of conjugates were obtained with CD22, NRP1 and in most cases with the integrin α1β1 receptor as well. The binding energies were calculated for each of the receptor ligand complexes through trajectory analysis using MMGBSA studies. SwissADME studies revealed that the compounds showed low GI absorption and were not found to be CYP inhibitors and had bioavailability score that would allow them to be considered as potential drug candidates. Overall, our results for the first time show that the designed conjugates can target multiple over-expressed receptors in tumor cells and may be potentially developed as future therapeutics for targeting tumor cells.
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18
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Understanding the physicochemical and transport properties of pyrazolium based ionic liquids bearing iodide and triiodide anions. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2021.118270] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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19
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Cotroneo-Figueroa VP, Gajardo-Parra NF, López-Porfiri P, Leiva Á, Gonzalez-Miquel M, Garrido JM, Canales RI. Hydrogen bond donor and alcohol chain length effect on the physicochemical properties of choline chloride based deep eutectic solvents mixed with alcohols. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2021.116986] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
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20
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Bashant MM, Mitchell SM, Hart LR, Lebedenko CG, Banerjee IA. In silico studies of interactions of peptide-conjugated cholesterol metabolites and betulinic acid with EGFR, LDR, and N-terminal fragment of CCKA receptors. J Mol Model 2021; 28:16. [PMID: 34961887 DOI: 10.1007/s00894-021-05007-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2021] [Accepted: 12/14/2021] [Indexed: 11/25/2022]
Abstract
In this work, we designed three new ligands by conjugating cholesterol metabolites 3-hydroxy-5-cholestenoic acid (3-HC) and 3-oxo-4-cholestenoic acid (3-OC) and the natural tri-terpenoid betulinic acid with the tumor-targeting peptide YHWYGYTPQNVI. Molecular interactions with the unconjugated peptide and the conjugates were examined with three receptors that are commonly overexpressed in pancreatic adenocarcinoma cells using ligand docking and molecular dynamics. This study demonstrated the utility of the designed conjugates as a valuable scaffold for potentially targeting EGFR and LDLR receptors. Our results indicate that the conjugates showed strong binding affinities and formation of stable complexes with EGFR, while the unconjugated peptide, BT-peptide conjugate, an 3-HC-peptide conjugate showed the formation of fairly stable complexes with LDLR receptor. For EGFR, two receptor kinase domains were explored. Interactions with the N-terminal domain of CCKA-R were relatively weaker. For LDLR, binding occurred in the beta-propeller region. For the N-terminal fragment of CCKA-R, the conjugates induced significant conformational changes in the receptor. The molecular dynamic simulations for 100 ns demonstrate that BT-peptide conjugates and the unconjugated peptide had the highest binding and formed the most stable complexes with EGFR. RMSD and trajectory analyses indicate that these molecules transit to a dynamically stable configuration in most cases within 60 ns. NMA analysis indicated that amongst the conjugates that showed relatively higher interactions with the respective receptors, the highest potential for deformability was seen for the N-terminal-47 amino acid region of the CCKA-R receptor with and the lowest for the LDLR-receptor. Thus, the newly designed compounds may be evaluated in the future toward developing drug delivery materials for targeting tumor cells overexpressing LDLR or EGFR.
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Affiliation(s)
- Madeline M Bashant
- Department of Chemistry, Fordham University, 441 East Fordham Road, Bronx, NY, 10458, USA
| | - Saige M Mitchell
- Department of Chemistry, Fordham University, 441 East Fordham Road, Bronx, NY, 10458, USA
| | - Lucy R Hart
- Department of Chemistry, Fordham University, 441 East Fordham Road, Bronx, NY, 10458, USA
| | - Charlotta G Lebedenko
- Department of Chemistry, Fordham University, 441 East Fordham Road, Bronx, NY, 10458, USA
| | - Ipsita A Banerjee
- Department of Chemistry, Fordham University, 441 East Fordham Road, Bronx, NY, 10458, USA.
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21
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Daso R, Mitchell SM, Lebedenko CG, Heise RM, Banerjee IA. Exploring the Interactions of Ionic Liquids with Bio-Organic Amphiphiles Using Computational Approaches. ACS OMEGA 2021; 6:32460-32474. [PMID: 34901596 PMCID: PMC8655765 DOI: 10.1021/acsomega.1c03864] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/21/2021] [Accepted: 11/03/2021] [Indexed: 06/14/2023]
Abstract
Bio-organic amphiphiles have been shown to effectively impart unique physicochemical properties to ionic liquids resulting in the formation of versatile hybrid composites. In this work, we utilized computational methods to probe the formation and properties of hybrids prepared by mixing three newly designed bio-organic amphiphiles with 14 ionic liquids containing cholinium or glycine betaine cations and a variety of anions. The three amphiphiles were designed such that they contain unique biological moieties found in nature by conjugating (a) malic acid with the amino acid glutamine, (b) thiomalic acid with the antiviral, antibacterial pyrazole compound [3-(3,5-dimethyl-1H-pyrazol-1-yl)benzyl]amine, and (c) Fmoc-protected valine with diphenyl amine. Conductor-like screening model for real solvents (COSMO-RS) was used to obtain sigma profiles of the hybrid mixtures and to predict viscosities and mixing enthalpies of each composite. These results were used to determine optimal ionic liquid-bio-organic amphiphile mixtures. Molecular dynamics simulations of three optimal hybrids were then performed, and the interactions involved in the formation of the hybrids were analyzed. Our results indicated that cholinium-based ILs interacted most favorably with the amphiphiles through a variety of inter- and intramolecular interactions. This work serves to illustrate important factors that influence the interactions between bio-organic amphiphiles and bio-ILs and aids in the development of novel ionic liquid-based composites for a wide variety of potential biological applications.
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22
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Perumal M, Balraj A, Jayaraman D, Krishnan J. Experimental investigation of density, viscosity, and surface tension of aqueous tetrabutylammonium-based ionic liquids. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2021; 28:63599-63613. [PMID: 33079352 DOI: 10.1007/s11356-020-11174-4] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/01/2020] [Accepted: 10/06/2020] [Indexed: 06/11/2023]
Abstract
The physical properties such as density, dynamic viscosity, and surface tension of aqueous tetrabutylammonium-based ionic liquids were measured experimentally by varying temperature (283.4 to 333.4 K) and concentration of ILs (10-50 wt%) at an interval of 10 K and 10 wt% respectively. In this study, the aqueous tetrabutylammonium-based ionic liquids namely tetrabutylammonium acetate [TBA][OAC], tetrabutylammonium bromide [TBA][Br], and tetrabutylammonium hydroxide [TBA][OH] was used to investigate the influence of temperature and concentration of ILs on the physical properties data was examined. It is observed that both density and surface tension increase with increasing concentration of [TBA][Br], whereas the opposite trend is observed for [TBA][OAC] and [TBA][OH] respectively. This is due to stronger molecular interaction between [TBA][Br] and water compared to other ILs. The dynamic viscosity of all aqueous ILs increases with increasing IL concentration. The measured physical properties of ILs decrease as temperature increases. Furthermore, the experimental data is correlated and compared with that of the calculated model; the agreement was satisfactory. Graphical abstract.
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Affiliation(s)
- Muthumari Perumal
- Carbon Capture Lab, Department of Chemical Engineering, Sri Sivasubramaniya Nadar College of Engineering, Kalavakkam, Chennai, Tamilnadu, 603110, India
| | - Ambedkar Balraj
- Carbon Capture Lab, Department of Chemical Engineering, Sri Sivasubramaniya Nadar College of Engineering, Kalavakkam, Chennai, Tamilnadu, 603110, India
| | - Dhanalakshmi Jayaraman
- Carbon Capture Lab, Department of Chemical Engineering, Sri Sivasubramaniya Nadar College of Engineering, Kalavakkam, Chennai, Tamilnadu, 603110, India.
| | - Jagannathan Krishnan
- Carbon Capture Lab, Department of Chemical Engineering, Sri Sivasubramaniya Nadar College of Engineering, Kalavakkam, Chennai, Tamilnadu, 603110, India
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23
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Cao Y, Wu Z, Zhang Y, Liu Y, Wang H. Screening of alternative solvent ionic liquids for artemisinin: COSMO-RS prediction and experimental verification. J Mol Liq 2021. [DOI: 10.1016/j.molliq.2021.116778] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
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24
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COSMO-RS based screening of ionic liquids for extraction of phenolic compounds from aqueous media. J Mol Liq 2021. [DOI: 10.1016/j.molliq.2021.115387] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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25
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Extraction of butanol and acetonitrile from aqueous solution using carboxylic acid based deep eutectic solvents. J Mol Liq 2021. [DOI: 10.1016/j.molliq.2020.115231] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
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26
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Taheri M, Zhu R, Yu G, Lei Z. Ionic liquid screening for CO2 capture and H2S removal from gases: The syngas purification case. Chem Eng Sci 2021. [DOI: 10.1016/j.ces.2020.116199] [Citation(s) in RCA: 23] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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27
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Nakaoka M, Tran KVB, Yanase K, Machida H, Norinaga K. Prediction of Phase Behavior of CO 2 Absorbents Using Conductor-like Screening Model for Real Solvents (COSMO-RS): An Approach to Identify Phase Separation Solvents of Amine/Ether/Water Systems upon CO 2 Absorption. Ind Eng Chem Res 2020. [DOI: 10.1021/acs.iecr.0c03233] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Mana Nakaoka
- Department of Chemical Systems Engineering, a Graduate School of Engineering, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8603, Japan
| | - Khuyen V. B. Tran
- Department of Chemical Systems Engineering, a Graduate School of Engineering, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8603, Japan
| | - Keiichi Yanase
- Department of Chemical Systems Engineering, a Graduate School of Engineering, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8603, Japan
| | - Hiroshi Machida
- Department of Chemical Systems Engineering, a Graduate School of Engineering, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8603, Japan
| | - Koyo Norinaga
- Department of Chemical Systems Engineering, a Graduate School of Engineering, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8603, Japan
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28
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Lubben MJ, Canales RI, Lyu Y, Held C, Gonzalez-Miquel M, Stadtherr MA, Brennecke JF. Promising Thiolanium Ionic Liquid for Extraction of Aromatics from Aliphatics: Experiments and Modeling. Ind Eng Chem Res 2020. [DOI: 10.1021/acs.iecr.0c02292] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Michael J. Lubben
- McKetta Department of Chemical Engineering, University of Texas at Austin, Austin, Texas 78712, United States
| | - Roberto I. Canales
- Departamento de Ingeniería Química y Bioprocesos, Pontificia Universidad Católica de Chile, Avenida Vicuña Mackenna 4860, Macul, Santiago 7820436, Chile
- Millennium Nuclei on Catalytic Processes towards Sustainable Chemistry (CSC), Santiago 7810000, Chile
| | - Yuanyuan Lyu
- McKetta Department of Chemical Engineering, University of Texas at Austin, Austin, Texas 78712, United States
| | - Christoph Held
- Laboratory of Thermodynamics, Department of Biochemical and Chemical Engineering, Technische Universität Dortmund, Emil-Figge-Straße 70, 44227 Dortmund, Germany
| | - Maria Gonzalez-Miquel
- Departamento de Ingeniería Química Industrial y del Medioambiente, Escuela Técnica Superior de Ingenieros Industriales, Universidad Politécnica de Madrid, José Gutiérrez Abascal 2, 28006 Madrid, Spain
| | - Mark A. Stadtherr
- McKetta Department of Chemical Engineering, University of Texas at Austin, Austin, Texas 78712, United States
| | - Joan F. Brennecke
- McKetta Department of Chemical Engineering, University of Texas at Austin, Austin, Texas 78712, United States
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29
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Lyu Y, Brennecke JF, Stadtherr MA. Review of Recent Aromatic–Aliphatic–Ionic Liquid Ternary Liquid–Liquid Equilibria and Their Modeling by COSMO-RS. Ind Eng Chem Res 2020. [DOI: 10.1021/acs.iecr.0c00581] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Yuanyuan Lyu
- McKetta Department of Chemical Engineering ,University of Texas, Austin, Texas 78712, United States
| | - Joan F. Brennecke
- McKetta Department of Chemical Engineering ,University of Texas, Austin, Texas 78712, United States
| | - Mark A. Stadtherr
- McKetta Department of Chemical Engineering ,University of Texas, Austin, Texas 78712, United States
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30
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Abstract
Abstract
Carbon capture, utilisation, and storage (CCUS) is considered as the least cost-intensive option towards achieving the emission reduction target by 2050. One of the important technologies to remove CO2 from different gas streams is solvent-based CO2 capture. Modelling and simulation of solvent-based CO2 capture processes have been attracting a lot of attention in recent years. Thermodynamic models play a vital role in these modelling and simulation studies. Hence, this study critically reviews the thermodynamic models applied in the modelling of solvent-based CO2 capture systems over the past years, to provide a guideline for the selection of the optimum models for future studies. These models have wide applications in two main areas: equilibrium modelling [vapour-liquid equilibrium (VLE) (physical) and speciation equilibrium (chemical)], and calculation of some thermodynamic properties. VLE and speciation modelling methods are classified rigorously. VLE modelling methods are classified as homogeneous, heterogeneous, and empirical, and speciation modelling methods are classified as iterative (which could be stoichiometric and non-stoichiometric) and non-iterative. Thermodynamic models are categorised into three key families: activity-coefficient based, equation of state based, and quantum mechanical based. Theory and concepts of different thermodynamic models are presented. Some selected studies that used each family of thermodynamic models are reviewed.
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31
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Ozturk B, Gonzalez-Miquel M. Alkanediol-based deep eutectic solvents for isolation of terpenoids from citrus essential oil: Experimental evaluation and COSMO-RS studies. Sep Purif Technol 2019. [DOI: 10.1016/j.seppur.2019.115707] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
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32
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Study on ionic liquid/cellulose/coagulator phase diagram and its application in green spinning process. J Mol Liq 2019. [DOI: 10.1016/j.molliq.2019.111127] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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33
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Chu Y, He X. MoDoop: An Automated Computational Approach for COSMO-RS Prediction of Biopolymer Solubilities in Ionic Liquids. ACS OMEGA 2019; 4:2337-2343. [PMID: 31459475 PMCID: PMC6648271 DOI: 10.1021/acsomega.8b03255] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/21/2018] [Accepted: 01/22/2019] [Indexed: 06/10/2023]
Abstract
An automated computational framework (MoDoop) was developed to predict the biopolymer solubilities in ionic liquids (ILs) on the basis of conductor-like screening model for real solvents calculations of two thermodynamic properties: logarithmic activity coefficient (ln γ) at infinite dilution and excess enthalpy (H E) of mixture. The calculation was based on the optimized two-dimensional structures of biopolymer models and ILs by searching the lowest-energy conformer and optimizing molecular geometry. Three lignin models together with one IL dataset were used to evaluate the prediction ability of the developed method. The evaluation results show that ln γ is a more reliable property to predict lignin solubilities in ILs and the p-coumaryl alcohol model is considered as the best model to represent lignin molecules. The developed MoDoop approach is efficient for rapid in silico screening of suitable ionic liquids to dissolve biopolymers.
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34
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González EJ, Díaz I, Gonzalez-Miquel M, Rodríguez M, Sueiras A. On the behavior of imidazolium versus pyrrolidinium ionic liquids as extractants of phenolic compounds from water: Experimental and computational analysis. Sep Purif Technol 2018. [DOI: 10.1016/j.seppur.2018.03.006] [Citation(s) in RCA: 42] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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35
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Esteban J, Gonzalez-Miquel M. Thermodynamic insights on the viscometric and volumetric properties of binary mixtures of ketals and polyols. J Mol Liq 2018. [DOI: 10.1016/j.molliq.2018.04.133] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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36
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Moreno D, Gonzalez‐Miquel M, Ferro VR, Palomar J. Molecular and Thermodynamic Properties of Zwitterions versus Ionic Liquids: A Comprehensive Computational Analysis to Develop Advanced Separation Processes. Chemphyschem 2018; 19:801-815. [DOI: 10.1002/cphc.201701093] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2017] [Revised: 11/27/2017] [Indexed: 11/07/2022]
Affiliation(s)
- Daniel Moreno
- Sección de Ingeniería QuímicaUniversidad Autónoma de Madrid C/Francisco Tomás y Valiente 7 28049 Madrid Spain
- School of Chemical Engineering and Analytical ScienceThe University of Manchester Manchester M13 9PL UK
| | - Maria Gonzalez‐Miquel
- School of Chemical Engineering and Analytical ScienceThe University of Manchester Manchester M13 9PL UK
| | - Victor R. Ferro
- Sección de Ingeniería QuímicaUniversidad Autónoma de Madrid C/Francisco Tomás y Valiente 7 28049 Madrid Spain
| | - Jose Palomar
- Sección de Ingeniería QuímicaUniversidad Autónoma de Madrid C/Francisco Tomás y Valiente 7 28049 Madrid Spain
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37
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Jeschke S, Johansson P. Predicting the Solubility of Sulfur: A COSMO-RS-Based Approach to Investigate Electrolytes for Li-S Batteries. Chemistry 2017; 23:9130-9136. [DOI: 10.1002/chem.201701011] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2017] [Indexed: 11/08/2022]
Affiliation(s)
- Steffen Jeschke
- Department of Physics; Chalmers University of Technology; 412 96 Gothenburg Sweden
| | - Patrik Johansson
- Department of Physics; Chalmers University of Technology; 412 96 Gothenburg Sweden
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38
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Hernández-Bravo R, Miranda AD, Martínez-Mora O, Domínguez Z, Martínez-Magadán JM, García-Chávez R, Domínguez-Esquivel JM. Calculation of the Solubility Parameter by COSMO-RS Methods and Its Influence on Asphaltene–Ionic Liquid Interactions. Ind Eng Chem Res 2017. [DOI: 10.1021/acs.iecr.6b05035] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- R. Hernández-Bravo
- Eje
Central Lázaro Cárdenas Norte 152, Col. San Bartolo
Atepehuacan, Instituto Mexicano del Petróleo, Gustavo A. Madero 07730, C. P. México
| | - A. D. Miranda
- Eje
Central Lázaro Cárdenas Norte 152, Col. San Bartolo
Atepehuacan, Instituto Mexicano del Petróleo, Gustavo A. Madero 07730, C. P. México
| | - O. Martínez-Mora
- Unidad
de Servicios de Apoyo en Resolución Analitica, Universidad Veracruzana, A.P. 575, Xalapa, Ver., México
| | - Z. Domínguez
- Unidad
de Servicios de Apoyo en Resolución Analitica, Universidad Veracruzana, A.P. 575, Xalapa, Ver., México
| | - J. M. Martínez-Magadán
- Eje
Central Lázaro Cárdenas Norte 152, Col. San Bartolo
Atepehuacan, Instituto Mexicano del Petróleo, Gustavo A. Madero 07730, C. P. México
| | - R. García-Chávez
- Eje
Central Lázaro Cárdenas Norte 152, Col. San Bartolo
Atepehuacan, Instituto Mexicano del Petróleo, Gustavo A. Madero 07730, C. P. México
| | - J. M. Domínguez-Esquivel
- Eje
Central Lázaro Cárdenas Norte 152, Col. San Bartolo
Atepehuacan, Instituto Mexicano del Petróleo, Gustavo A. Madero 07730, C. P. México
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Podgoršek A, Jacquemin J, Pádua AAH, Costa Gomes MF. Mixing Enthalpy for Binary Mixtures Containing Ionic Liquids. Chem Rev 2016; 116:6075-106. [DOI: 10.1021/acs.chemrev.5b00379] [Citation(s) in RCA: 77] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- A. Podgoršek
- Equipe
Thermodynamique et Interactions Moléculaires, Institut de Chimie de Clermont-Ferrand, UMR CNRS 6296, 24 Avenue des Landais, BP 80026, 63177 Aubière Cedex, France
| | - J. Jacquemin
- Equipe
Thermodynamique et Interactions Moléculaires, Institut de Chimie de Clermont-Ferrand, UMR CNRS 6296, 24 Avenue des Landais, BP 80026, 63177 Aubière Cedex, France
- School
of Chemistry and Chemical Engineering, Queen’s University Belfast, Stranmillis
Road, Belfast BT9 5AG, United Kingdom
| | - A. A. H. Pádua
- Equipe
Thermodynamique et Interactions Moléculaires, Institut de Chimie de Clermont-Ferrand, UMR CNRS 6296, 24 Avenue des Landais, BP 80026, 63177 Aubière Cedex, France
| | - M. F. Costa Gomes
- Equipe
Thermodynamique et Interactions Moléculaires, Institut de Chimie de Clermont-Ferrand, UMR CNRS 6296, 24 Avenue des Landais, BP 80026, 63177 Aubière Cedex, France
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40
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Larriba M, Navarro P, Gonzalez-Miquel M, Omar S, Palomar J, García J, Rodríguez F. Dicyanamide-based ionic liquids in the liquid–liquid extraction of aromatics from alkanes: Experimental evaluation and computational predictions. Chem Eng Res Des 2016. [DOI: 10.1016/j.cherd.2016.02.036] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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41
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Cao B, Du J, Liu S, Zhu X, Sun X, Sun H, Fu H. Carbon dioxide capture by amino-functionalized ionic liquids: DFT based theoretical analysis substantiated by FT-IR investigation. RSC Adv 2016. [DOI: 10.1039/c5ra23959a] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Both computational and experimental studies show amino-functionalized ionic liquids, [aEMMIM][X] (X = F, Cl, Br, and I), can chemically capture CO2.
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Affiliation(s)
- Bobo Cao
- School of Chemistry and Chemical Engineering
- Qufu Normal University
- Qufu
- People's Republic of China
| | - Jiuyao Du
- School of Chemistry and Chemical Engineering
- Qufu Normal University
- Qufu
- People's Republic of China
| | - Shuangyue Liu
- School of Chemistry and Chemical Engineering
- Qufu Normal University
- Qufu
- People's Republic of China
| | - Xiao Zhu
- School of Chemistry and Chemical Engineering
- Qufu Normal University
- Qufu
- People's Republic of China
| | - Xuejun Sun
- School of Chemistry and Chemical Engineering
- Qufu Normal University
- Qufu
- People's Republic of China
| | - Haitao Sun
- School of Chemistry and Chemical Engineering
- Qufu Normal University
- Qufu
- People's Republic of China
| | - Hui Fu
- College of Science
- China University of Petroleum
- Qingdao
- People's Republic of China
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42
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Larriba M, Omar S, Navarro P, García J, Rodríguez F, Gonzalez-Miquel M. Recovery of tyrosol from aqueous streams using hydrophobic ionic liquids: a first step towards developing sustainable processes for olive mill wastewater (OMW) management. RSC Adv 2016. [DOI: 10.1039/c5ra26510j] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Hydrophobic ILs have been proposed as VOCs replacements for tyrosol recovery from aqueous solutions, revealing promising extraction efficiency and regeneration capacity. This will help developing sustainable processes for olive mill waste management.
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Affiliation(s)
- Marcos Larriba
- Department of Chemical Engineering
- Complutense University of Madrid
- E-28040 Madrid
- Spain
- School of Chemical Engineering and Analytical Science
| | - Salama Omar
- Sección de Ingeniería Química
- Universidad Autónoma de Madrid
- Madrid
- Spain
| | - Pablo Navarro
- Department of Chemical Engineering
- Complutense University of Madrid
- E-28040 Madrid
- Spain
| | - Julián García
- Department of Chemical Engineering
- Complutense University of Madrid
- E-28040 Madrid
- Spain
| | - Francisco Rodríguez
- Department of Chemical Engineering
- Complutense University of Madrid
- E-28040 Madrid
- Spain
| | - Maria Gonzalez-Miquel
- School of Chemical Engineering and Analytical Science
- The University of Manchester
- Manchester
- UK
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43
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Canales RI, Lubben MJ, Gonzalez-Miquel M, Brennecke JF. Solubility of CO2 in [1-n-butylthiolanium][Tf2N]+toluene mixtures: liquid-liquid phase split separation and modelling. PHILOSOPHICAL TRANSACTIONS. SERIES A, MATHEMATICAL, PHYSICAL, AND ENGINEERING SCIENCES 2015; 373:rsta.2015.0011. [PMID: 26574531 DOI: 10.1098/rsta.2015.0011] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 07/29/2015] [Indexed: 06/05/2023]
Abstract
Carbon dioxide has been shown to be an effective antisolvent gas for separating organic compounds from ionic liquids (ILs) by inducing a liquid-vapour to liquid-liquid-vapour transition. Using carbon dioxide, toluene can be separated from imidazolium, phosphonium and pyridinum cation-based ILs with the bis(trifluoromethylsulfonyl)imide anion, which is relatively hydrophobic and has a high toluene solubility. A new IL with relatively low viscosity is tested here for the same toluene separation process: 1-n-butylthiolanium bis(trifluoromethylsulfonyl)imide. Carbon dioxide solubility in binary and ternary systems containing toluene and 1-n-butylthiolanium bis(trifluoromethylsulfonyl)imide is measured at 298.15 and 313.15 K up to 7.4 MPa. Solubility behaviour in this IL is similar to imidazolium-based ILs with the same anion. However, phase split pressures are lower when 1-n-butylthiolanium bis (trifluoromethylsulfonyl)imide is used instead of 1- n-hexyl-3-methylimidazolium bis(trifluoromethylsu- lfonyl)imide at the same conditions of temperature and initial composition of toluene in the IL. Solubility data are modelled with the conductor-like screening model for real solvents combined with the Soave-Redlich-Kwong equation of state, which provides good qualitative results.
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Affiliation(s)
- Roberto I Canales
- Department of Chemical and Biomolecular Engineering, University of Notre Dame, Notre Dame, IN 46556, USA
| | - Michael J Lubben
- Department of Chemical and Biomolecular Engineering, University of Notre Dame, Notre Dame, IN 46556, USA
| | - Maria Gonzalez-Miquel
- School of Chemical Engineering and Analytical Science, University of Manchester, Manchester M13 9PL, UK
| | - Joan F Brennecke
- Department of Chemical and Biomolecular Engineering, University of Notre Dame, Notre Dame, IN 46556, USA
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44
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Cao L, Huang J, Zhang X, Zhang S, Gao J, Zeng S. Imidazole tailored deep eutectic solvents for CO2 capture enhanced by hydrogen bonds. Phys Chem Chem Phys 2015; 17:27306-16. [DOI: 10.1039/c5cp04050g] [Citation(s) in RCA: 86] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Hydrogen bonds enhance the CO2 uptake in novel imidazolium tailored deep eutectic solvents.
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Affiliation(s)
- Lingdi Cao
- Beijing Key Laboratory of Ionic Liquids Clean Process
- State Key Laboratory of Multiphase Complex Systems
- Key Laboratory of Green Process and Engineering
- Institute of Process Engineering
- Chinese Academy of Sciences
| | - Junhua Huang
- CSIRO Energy Technology
- Clayton South
- Australia
- School of Chemistry
- Monash University
| | - Xiangping Zhang
- Beijing Key Laboratory of Ionic Liquids Clean Process
- State Key Laboratory of Multiphase Complex Systems
- Key Laboratory of Green Process and Engineering
- Institute of Process Engineering
- Chinese Academy of Sciences
| | - Suojiang Zhang
- Beijing Key Laboratory of Ionic Liquids Clean Process
- State Key Laboratory of Multiphase Complex Systems
- Key Laboratory of Green Process and Engineering
- Institute of Process Engineering
- Chinese Academy of Sciences
| | - Jubao Gao
- Beijing Key Laboratory of Ionic Liquids Clean Process
- State Key Laboratory of Multiphase Complex Systems
- Key Laboratory of Green Process and Engineering
- Institute of Process Engineering
- Chinese Academy of Sciences
| | - Shaojuan Zeng
- Beijing Key Laboratory of Ionic Liquids Clean Process
- State Key Laboratory of Multiphase Complex Systems
- Key Laboratory of Green Process and Engineering
- Institute of Process Engineering
- Chinese Academy of Sciences
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