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For: Kuppuraj G, Kruise D, Yura K. Conformational behavior of flavin adenine dinucleotide: conserved stereochemistry in bound and free states. J Phys Chem B 2014;118:13486-97. [PMID: 25389798 DOI: 10.1021/jp507629n] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Number Cited by Other Article(s)
1
Hovan A, Gala M, Sedláková D, Bánó G, Lee OS, Žoldák G, Sedlák E. On the production of singlet oxygen by the isoalloxazine ring in free and protein-bound flavin cofactors. Biophys Chem 2024;316:107333. [PMID: 39413722 DOI: 10.1016/j.bpc.2024.107333] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2024] [Revised: 10/08/2024] [Accepted: 10/08/2024] [Indexed: 10/18/2024]
2
Hovan A, Sedláková D, Lee OS, Bánó G, Sedlák E. pH modulates efficiency of singlet oxygen production by flavin cofactors. RSC Adv 2024;14:28783-28790. [PMID: 39263436 PMCID: PMC11388723 DOI: 10.1039/d4ra05540c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2024] [Accepted: 09/04/2024] [Indexed: 09/13/2024]  Open
3
Zhang L, Xiao K, Wang X, Kong L. A novel fusion technology utilizing complex network and sequence information for FAD-binding site identification. Anal Biochem 2024;685:115401. [PMID: 37981176 DOI: 10.1016/j.ab.2023.115401] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2023] [Revised: 11/08/2023] [Accepted: 11/14/2023] [Indexed: 11/21/2023]
4
Beltukova DM, Danilova MK, Gradusov IA, Belik VP, Semenova IV, Vasyutinskii OS. Polarised fluorescence in FAD excited at 355 and 450 nm in water–propylene glycol solutions. Mol Phys 2022. [DOI: 10.1080/00268976.2022.2118186] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
5
Arib C, Bouchemal N, Barile M, Paleni D, Djaker N, Dupont N, Spadavecchia J. Flavin-adenine-dinucleotide gold complex nanoparticles: chemical modeling design, physico-chemical assessment and perspectives in nanomedicine. NANOSCALE ADVANCES 2021;3:6144-6156. [PMID: 36133939 PMCID: PMC9418941 DOI: 10.1039/d1na00444a] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/15/2021] [Accepted: 08/09/2021] [Indexed: 05/10/2023]
6
Nguyen TTD, Nguyen DK, Ou YY. Addressing data imbalance problems in ligand-binding site prediction using a variational autoencoder and a convolutional neural network. Brief Bioinform 2021;22:6329407. [PMID: 34322702 DOI: 10.1093/bib/bbab277] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2021] [Revised: 06/29/2021] [Accepted: 06/30/2021] [Indexed: 11/14/2022]  Open
7
Ho QT, Nguyen TTD, Khanh Le NQ, Ou YY. FAD-BERT: Improved prediction of FAD binding sites using pre-training of deep bidirectional transformers. Comput Biol Med 2021;131:104258. [PMID: 33601085 DOI: 10.1016/j.compbiomed.2021.104258] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2020] [Revised: 01/16/2021] [Accepted: 02/03/2021] [Indexed: 02/07/2023]
8
Yin YD, Zhang L, Leng XZ, Gu ZY. Harnessing biological nanopore technology to track chemical changes. Trends Analyt Chem 2020. [DOI: 10.1016/j.trac.2020.116091] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
9
Samukaite-Bubniene U, Mazetyte-Stasinskiene R, Chernyakova K, Karpicz R, Ramanavicius A. Time-resolved fluorescence spectroscopy based evaluation of stability of glucose oxidase. Int J Biol Macromol 2020;163:676-682. [PMID: 32629055 DOI: 10.1016/j.ijbiomac.2020.06.284] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2020] [Revised: 06/24/2020] [Accepted: 06/29/2020] [Indexed: 10/23/2022]
10
Yang R, Zhang C, Gao R, Zhang L, Song Q. Predicting FAD Interacting Residues with Feature Selection and Comprehensive Sequence Descriptors. IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 2019;16:2046-2056. [PMID: 29993986 DOI: 10.1109/tcbb.2018.2824332] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
11
Li MY, Wang YQ, Ying YL, Long YT. Revealing the transient conformations of a single flavin adenine dinucleotide using an aerolysin nanopore. Chem Sci 2019;10:10400-10404. [PMID: 32110330 PMCID: PMC6988595 DOI: 10.1039/c9sc03163d] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2019] [Accepted: 09/20/2019] [Indexed: 12/13/2022]  Open
12
Wakchaure PD, Jana K, Ganguly B. Structural insights into the interactions of flavin mononucleotide (FMN) and riboflavin with FMN riboswitch: a molecular dynamics simulation study. J Biomol Struct Dyn 2019;38:3856-3866. [PMID: 31498025 DOI: 10.1080/07391102.2019.1665587] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
13
Soltani S, Ojaghi A, Robles FE. Deep UV dispersion and absorption spectroscopy of biomolecules. BIOMEDICAL OPTICS EXPRESS 2019;10:487-499. [PMID: 30800494 PMCID: PMC6377894 DOI: 10.1364/boe.10.000487] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/12/2018] [Revised: 12/07/2018] [Accepted: 12/09/2018] [Indexed: 05/03/2023]
14
Bull JN, Carrascosa E, Giacomozzi L, Bieske EJ, Stockett MH. Ion mobility action spectroscopy of flavin dianions reveals deprotomer-dependent photochemistry. Phys Chem Chem Phys 2018;20:19672-19681. [PMID: 30014081 PMCID: PMC6063075 DOI: 10.1039/c8cp03244k] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
15
Suganuma T, Workman JL. Chromatin and Metabolism. Annu Rev Biochem 2018;87:27-49. [DOI: 10.1146/annurev-biochem-062917-012634] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
16
Thai NQ, Nguyen NQ, Nguyen C, Nguyen TQ, Ho K, Nguyen TT, Li MS. Screening potential inhibitors for cancer target LSD1 from natural products by steered molecular dynamics. MOLECULAR SIMULATION 2017. [DOI: 10.1080/08927022.2017.1380802] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
17
Sargsyan K, Hua YH, Lim C. Clustangles: An Open Library for Clustering Angular Data. J Chem Inf Model 2015;55:1517-20. [PMID: 26262955 DOI: 10.1021/acs.jcim.5b00316] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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