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Dana AG, Johnson MS, Allen JW, Sharma S, Raman S, Liu M, Gao CW, Grambow CA, Goldman MJ, Ranasinghe DS, Gillis RJ, Payne AM, Li Y, Dong X, Spiekermann KA, Wu H, Dames EE, Buras ZJ, Vandewiele NM, Yee NW, Merchant SS, Buesser B, Class CA, Goldsmith F, West RH, Green WH. Automated reaction kinetics and network exploration (Arkane): A statistical mechanics, thermodynamics, transition state theory, and master equation software. INT J CHEM KINET 2023. [DOI: 10.1002/kin.21637] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/05/2023]
Affiliation(s)
- Alon Grinberg Dana
- Department of Chemical Engineering Massachusetts Institute of Technology Cambridge Massachusetts USA
- The Wolfson Department of Chemical Engineering and Grand Technion Energy Program (GTEP) Technion – Israel Institute of Technology Haifa Israel
| | - Matthew S. Johnson
- Department of Chemical Engineering Massachusetts Institute of Technology Cambridge Massachusetts USA
| | - Joshua W. Allen
- Department of Chemical Engineering Massachusetts Institute of Technology Cambridge Massachusetts USA
| | - Sandeep Sharma
- Department of Chemistry University of Colorado Boulder CO USA
| | - Sumathy Raman
- Department of Chemical Engineering Massachusetts Institute of Technology Cambridge Massachusetts USA
| | - Mengjie Liu
- Department of Chemical Engineering Massachusetts Institute of Technology Cambridge Massachusetts USA
| | - Connie W. Gao
- Department of Chemical Engineering Massachusetts Institute of Technology Cambridge Massachusetts USA
| | - Colin A. Grambow
- Department of Chemical Engineering Massachusetts Institute of Technology Cambridge Massachusetts USA
| | - Mark J. Goldman
- Department of Chemical Engineering Massachusetts Institute of Technology Cambridge Massachusetts USA
| | - Duminda S. Ranasinghe
- Department of Chemical Engineering Massachusetts Institute of Technology Cambridge Massachusetts USA
| | - Ryan J. Gillis
- Department of Chemical Engineering Massachusetts Institute of Technology Cambridge Massachusetts USA
| | - A. Mark Payne
- Department of Chemical Engineering Massachusetts Institute of Technology Cambridge Massachusetts USA
| | - Yi‐Pei Li
- Department of Chemical Engineering National Taiwan University Taipei Taiwan
| | - Xiaorui Dong
- Department of Chemical Engineering Massachusetts Institute of Technology Cambridge Massachusetts USA
| | - Kevin A. Spiekermann
- Department of Chemical Engineering Massachusetts Institute of Technology Cambridge Massachusetts USA
| | - Haoyang Wu
- Department of Chemical Engineering Massachusetts Institute of Technology Cambridge Massachusetts USA
| | - Enoch E. Dames
- Department of Chemical Engineering Massachusetts Institute of Technology Cambridge Massachusetts USA
| | - Zachary J. Buras
- Department of Chemical Engineering Massachusetts Institute of Technology Cambridge Massachusetts USA
| | - Nick M. Vandewiele
- Department of Chemical Engineering Massachusetts Institute of Technology Cambridge Massachusetts USA
| | - Nathan W. Yee
- Department of Chemical Engineering Massachusetts Institute of Technology Cambridge Massachusetts USA
| | - Shamel S. Merchant
- Department of Chemical Engineering Massachusetts Institute of Technology Cambridge Massachusetts USA
| | - Beat Buesser
- Department of Chemical Engineering Massachusetts Institute of Technology Cambridge Massachusetts USA
| | - Caleb A. Class
- Department of Chemical Engineering Massachusetts Institute of Technology Cambridge Massachusetts USA
| | | | - Richard H. West
- Department of Chemical Engineering Northeastern University Boston Massachusetts USA
| | - William H. Green
- Department of Chemical Engineering Massachusetts Institute of Technology Cambridge Massachusetts USA
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2
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Cavallotti C, Della Libera A, Zhou CW, Recio P, Caracciolo A, Balucani N, Casavecchia P. Crossed-beam and theoretical studies of multichannel nonadiabatic reactions: branching fractions and role of intersystem crossing for O(3P)+1,3-butadiene. Faraday Discuss 2022; 238:161-182. [DOI: 10.1039/d2fd00037g] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Atomic oxygen reactions can contribute significantly to the oxidation of unsaturated aliphatic and aromatic hydrocarbons. The reaction mechanism is started by electrophilic O atom addition to the unsaturated bond(s) to...
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3
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Chu TC, Buras ZJ, Eyob B, Smith MC, Liu M, Green WH. Direct Kinetics and Product Measurement of Phenyl Radical + Ethylene. J Phys Chem A 2020; 124:2352-2365. [PMID: 32118435 PMCID: PMC7307927 DOI: 10.1021/acs.jpca.9b11543] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
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The phenyl + ethylene (C6H5 + C2H4) reaction network was
explored experimentally and theoretically
to understand the temperature dependence of the reaction kinetics
and product distribution under various temperature and pressure conditions.
The flash photolysis apparatus combining laser absorbance spectroscopy
(LAS) and time-resolved molecular beam mass spectrometry (MBMS) was
used to study reactions on the C8H9 potential
energy surface (PES). In LAS experiments, 505.3 nm laser light selectively
probed C6H5 decay, and we measured the total
C6H5 consumption rate coefficients in the intermediate
temperature region (400–800 K), which connects previous experiments
performed in high-temperature (pyrolysis) and low-temperature (cavity-ring-down
methods) regions. From the quantum chemistry calculations by Tokmakov
and Lin using the G2M(RCC5)//B3LYP method, we constructed a kinetic
model and estimated phenomenological pressure-dependent rate coefficients, k(T, P), with the Arkane
package in the reaction mechanism generator. The MBMS experiments,
performed at 600–800 K and 10–50 Torr, revealed three
major product peaks: m/z = 105 (adducts,
mostly 2-phenylethyl radical, but also 1-phenylethyl radical, ortho-ethyl phenyl radical, and a spiro-fused ring radical),
104 (styrene, co-product with a H atom), and 78 (benzene, co-product
with C2H3 radical). Product branching ratios
were predicted by the model and validated by experiments for the first
time. At 600 K and 10 Torr, the yield ratio of the H-abstraction reaction
(forming benzene + C2H3) is measured to be 1.1%
and the H-loss channel (styrene + H) has a 2.5% yield ratio. The model
predicts 1.0% for H-abstraction and 2.3% for H-loss, which is within
the experimental error bars. The branching ratio and formation of
styrene increase at high temperature due to the favored formally direct
channel (1.0% at 600 K and 10 Torr, 5.8% at 800 K and 10 Torr in the
model prediction) and the faster β-scission reactions of C8H9 isomers. The importance of pressure dependence
in kinetics is verified by the increase in the yield of the stabilized
adduct from radical addition from 80.2% (800 K, 10 Torr) to 88.9%
(800 K, 50 Torr), at the expense of styrene + H. The pressure-dependent
model developed in this work is well validated by the LAS and MBMS
measurements and gives a complete picture of the C6H5 + C2H4 reaction.
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Affiliation(s)
- Te-Chun Chu
- Department of Chemical Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, Massachusetts 02139, United States
| | - Zachary J Buras
- Department of Chemical Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, Massachusetts 02139, United States
| | - Brook Eyob
- Department of Chemical Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, Massachusetts 02139, United States
| | - Mica C Smith
- Department of Chemical Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, Massachusetts 02139, United States
| | - Mengjie Liu
- Department of Chemical Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, Massachusetts 02139, United States
| | - William H Green
- Department of Chemical Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, Massachusetts 02139, United States
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4
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Sahbi F, Rezgui Y, Guemini M. Effect of Hydrogen Addition on the Sooting Tendency of 1,3-Butadiene Premixed Flames. KINETICS AND CATALYSIS 2019. [DOI: 10.1134/s0023158419040153] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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5
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Middaugh JE, Buras ZJ, Matrat M, Chu TC, Kim YS, Alecu IM, Vasiliou AK, Goldsmith CF, Green WH. A combined photoionization time-of-flight mass spectrometry and laser absorption spectrometry flash photolysis apparatus for simultaneous determination of reaction rates and product branching. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2018; 89:074102. [PMID: 30068092 DOI: 10.1063/1.5024399] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/31/2018] [Accepted: 07/04/2018] [Indexed: 06/08/2023]
Abstract
In recent years, predictions of product branching for reactions of consequence to both combustion and atmospheric chemistry have outpaced validating experiments. An apparatus is described that aims to fill this void by combining several well-known experimental techniques into one: flash photolysis for radical generation, multiple-pass laser absorption spectrometry (LAS) for overall kinetics measurements, and time-resolved photoionization time-of-flight mass spectrometry (PI TOF-MS) for product branching quantification. The sensitivity of both the LAS and PI TOF-MS detection techniques is shown to be suitable for experiments with initial photolytically generated radical concentrations of ∼1 × 1012 molecules cm-3. As it is fast (μs time resolution) and non-intrusive, LAS is preferred for accurate kinetics (time-dependence) measurements. By contrast, PI TOF-MS is preferred for product quantification because it provides a near-complete picture of the reactor composition in a single mass spectrum. The value of simultaneous LAS and PI TOF-MS detection is demonstrated for the chemically interesting phenyl radical + propene system.
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Affiliation(s)
- Joshua E Middaugh
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
| | - Zachary J Buras
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
| | - Mickael Matrat
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
| | - Te-Chun Chu
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
| | - Young-Seok Kim
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
| | - Ionut M Alecu
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
| | - AnGayle K Vasiliou
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
| | - C Franklin Goldsmith
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
| | - William H Green
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
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6
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Gudiyella S, Buras ZJ, Chu TC, Lengyel I, Pannala S, Green WH. Modeling Study of High Temperature Pyrolysis of Natural Gas. Ind Eng Chem Res 2018. [DOI: 10.1021/acs.iecr.8b00758] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Soumya Gudiyella
- Chemical Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, Massachusetts 02139, United States
| | - Zachary J. Buras
- Chemical Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, Massachusetts 02139, United States
| | - Te-Chun Chu
- Chemical Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, Massachusetts 02139, United States
| | - Istvan Lengyel
- SABIC Technology
Center, 1600 Industrial Boulevard, Sugar Land, Texas 77478, United States
| | - Sreekanth Pannala
- SABIC Technology
Center, 1600 Industrial Boulevard, Sugar Land, Texas 77478, United States
| | - William H. Green
- Chemical Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, Massachusetts 02139, United States
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7
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Plehiers PP, Marin GB, Stevens CV, Van Geem KM. Automated reaction database and reaction network analysis: extraction of reaction templates using cheminformatics. J Cheminform 2018. [PMID: 29524042 PMCID: PMC5845084 DOI: 10.1186/s13321-018-0269-8] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
Abstract
Both the automated generation of reaction networks and the automated prediction of synthetic trees require, in one way or another, the definition of possible transformations a molecule can undergo. One way of doing this is by using reaction templates. In view of the expanding amount of known reactions, it has become more and more difficult to envision all possible transformations that could occur in a studied system. Nonetheless, most reaction network generation tools rely on user-defined reaction templates. Not only does this limit the amount of chemistry that can be accounted for in the reaction networks, it also confines the wide-spread use of the tools by a broad public. In retrosynthetic analysis, the quality of the analysis depends on what percentage of the known chemistry is accounted for. Using databases to identify templates is therefore crucial in this respect. For this purpose, an algorithm has been developed to extract reaction templates from various types of chemical databases. Some databases such as the Kyoto Encyclopedia for Genes and Genomes and RMG do not report an atom-atom mapping (AAM) for the reactions. This makes the extraction of a template non-straightforward. If no mapping is available, it is calculated by the Reaction Decoder Tool (RDT). With a correct AAM-either calculated by RDT or specified-the algorithm consistently extracts a correct template for a wide variety of reactions, both elementary and non-elementary. The developed algorithm is a first step towards data-driven generation of synthetic trees or reaction networks, and a greater accessibility for non-expert users.
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Affiliation(s)
- Pieter P Plehiers
- Laboratory for Chemical Technology, Department of Materials, Textiles and Chemical Engineering, Ghent University, Technologiepark 914, 9052, Ghent, Belgium
| | - Guy B Marin
- Laboratory for Chemical Technology, Department of Materials, Textiles and Chemical Engineering, Ghent University, Technologiepark 914, 9052, Ghent, Belgium
| | - Christian V Stevens
- SynBioC Research Group, Department of Sustainable Organic Chemistry and Technology, Faculty of Bioscience Engineering, Ghent University, Coupure Links 653, 9000, Ghent, Belgium
| | - Kevin M Van Geem
- Laboratory for Chemical Technology, Department of Materials, Textiles and Chemical Engineering, Ghent University, Technologiepark 914, 9052, Ghent, Belgium.
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8
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Buras ZJ, Chu TC, Jamal A, Yee NW, Middaugh JE, Green WH. Phenyl radical + propene: a prototypical reaction surface for aromatic-catalyzed 1,2-hydrogen-migration and subsequent resonance-stabilized radical formation. Phys Chem Chem Phys 2018; 20:13191-13214. [DOI: 10.1039/c8cp01159a] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
H-Shifts in the alkyl chain catalyzed by an aromatic ring (green pathway).
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Affiliation(s)
- Zachary J. Buras
- Department of Chemical Engineering
- Massachusetts Institute of Technology
- Cambridge
- USA
| | - Te-Chun Chu
- Department of Chemical Engineering
- Massachusetts Institute of Technology
- Cambridge
- USA
| | - Adeel Jamal
- Department of Chemical Engineering
- Massachusetts Institute of Technology
- Cambridge
- USA
| | - Nathan W. Yee
- Department of Chemical Engineering
- Massachusetts Institute of Technology
- Cambridge
- USA
| | - Joshua E. Middaugh
- Department of Chemical Engineering
- Massachusetts Institute of Technology
- Cambridge
- USA
| | - William H. Green
- Department of Chemical Engineering
- Massachusetts Institute of Technology
- Cambridge
- USA
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9
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Zaleski DP, Harding LB, Klippenstein SJ, Ruscic B, Prozument K. Time-Resolved Kinetic Chirped-Pulse Rotational Spectroscopy in a Room-Temperature Flow Reactor. J Phys Chem Lett 2017; 8:6180-6188. [PMID: 29193976 DOI: 10.1021/acs.jpclett.7b02864] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Chirped-pulse Fourier transform millimeter-wave spectroscopy is a potentially powerful tool for studying chemical reaction dynamics and kinetics. Branching ratios of multiple reaction products and intermediates can be measured with unprecedented chemical specificity; molecular isomers, conformers, and vibrational states have distinct rotational spectra. Here we demonstrate chirped-pulse spectroscopy of vinyl cyanide photoproducts in a flow tube reactor at ambient temperature of 295 K and pressures of 1-10 μbar. This in situ and time-resolved experiment illustrates the utility of this novel approach to investigating chemical reaction dynamics and kinetics. Following 193 nm photodissociation of CH2CHCN, we observe rotational relaxation of energized HCN, HNC, and HCCCN photoproducts with 10 μs time resolution and sample the vibrational population distribution of HCCCN. The experimental branching ratio HCN/HCCCN is compared with a model based on RRKM theory using high-level ab initio calculations, which were in turn validated by comparisons to Active Thermochemical Tables enthalpies.
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Affiliation(s)
- Daniel P Zaleski
- Chemical Sciences and Engineering Division, Argonne National Laboratory , Argonne, Illinois 60439, United States
| | - Lawrence B Harding
- Chemical Sciences and Engineering Division, Argonne National Laboratory , Argonne, Illinois 60439, United States
| | - Stephen J Klippenstein
- Chemical Sciences and Engineering Division, Argonne National Laboratory , Argonne, Illinois 60439, United States
| | - Branko Ruscic
- Chemical Sciences and Engineering Division, Argonne National Laboratory , Argonne, Illinois 60439, United States
| | - Kirill Prozument
- Chemical Sciences and Engineering Division, Argonne National Laboratory , Argonne, Illinois 60439, United States
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Wang K, Villano SM, Dean AM. Ab initio study of the influence of resonance stabilization on intramolecular ring closure reactions of hydrocarbon radicals. Phys Chem Chem Phys 2016; 18:8437-52. [DOI: 10.1039/c5cp06994g] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The cyclization reactions of dieneyl radicals provide a low energy route to the formation of molecular weight growth products.
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Affiliation(s)
- Kun Wang
- Chemical and Biological Engineering Dept
- Colorado School of Mines
- Golden
- USA
| | | | - Anthony M. Dean
- Chemical and Biological Engineering Dept
- Colorado School of Mines
- Golden
- USA
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