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For: Gilmore J, McKenzie RH. Quantum Dynamics of Electronic Excitations in Biomolecular Chromophores:  Role of the Protein Environment and Solvent. J Phys Chem A 2008;112:2162-76. [DOI: 10.1021/jp710243t] [Citation(s) in RCA: 63] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Number Cited by Other Article(s)
1
Winkler R, Ciria M, Ahmad M, Plank H, Marcuello C. A Review of the Current State of Magnetic Force Microscopy to Unravel the Magnetic Properties of Nanomaterials Applied in Biological Systems and Future Directions for Quantum Technologies. NANOMATERIALS (BASEL, SWITZERLAND) 2023;13:2585. [PMID: 37764614 PMCID: PMC10536909 DOI: 10.3390/nano13182585] [Citation(s) in RCA: 17] [Impact Index Per Article: 17.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/29/2023] [Revised: 09/13/2023] [Accepted: 09/15/2023] [Indexed: 09/29/2023]
2
Madrid-Úsuga D, Reina JH. Molecular Structure, Quantum Coherence, and Solvent Effects on the Ultrafast Electron Transport in BODIPY-C60 Derivatives. J Phys Chem A 2021;125:2518-2531. [PMID: 33754739 DOI: 10.1021/acs.jpca.1c00603] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
3
Lawrence JE, Manolopoulos DE. Confirming the role of nuclear tunneling in aqueous ferrous–ferric electron transfer. J Chem Phys 2020;153:154114. [DOI: 10.1063/5.0022678] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]  Open
4
Madrid-Úsuga D, Susa CE, Reina JH. Room temperature quantum coherence vs. electron transfer in a rhodanine derivative chromophore. Phys Chem Chem Phys 2019;21:12640-12648. [PMID: 31155625 DOI: 10.1039/c9cp01398a] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
5
Nelson PC. The Role of Quantum Decoherence in FRET. Biophys J 2018;115:167-172. [PMID: 29459089 DOI: 10.1016/j.bpj.2018.01.010] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2017] [Revised: 01/06/2018] [Accepted: 01/09/2018] [Indexed: 10/18/2022]  Open
6
Jumper CC, Arpin PC, Turner DB, McClure SD, Rather SR, Dean JC, Cina JA, Kovac PA, Mirkovic T, Scholes GD. Broad-Band Pump-Probe Spectroscopy Quantifies Ultrafast Solvation Dynamics of Proteins and Molecules. J Phys Chem Lett 2016;7:4722-4731. [PMID: 27934206 DOI: 10.1021/acs.jpclett.6b02237] [Citation(s) in RCA: 35] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/19/2023]
7
Curutchet C, Mennucci B. Quantum Chemical Studies of Light Harvesting. Chem Rev 2016;117:294-343. [PMID: 26958698 DOI: 10.1021/acs.chemrev.5b00700] [Citation(s) in RCA: 218] [Impact Index Per Article: 27.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
8
Levi F, Mostarda S, Rao F, Mintert F. Quantum mechanics of excitation transport in photosynthetic complexes: a key issues review. REPORTS ON PROGRESS IN PHYSICS. PHYSICAL SOCIETY (GREAT BRITAIN) 2015;78:082001. [PMID: 26194028 DOI: 10.1088/0034-4885/78/8/082001] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
9
Gillis CG, Jones GA. A Theoretical Investigation into the Effects of Temperature on Spatiotemporal Dynamics of EET in the FMO Complex. J Phys Chem B 2015;119:4165-74. [DOI: 10.1021/jp509103e] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
10
Rukin PS, Freidzon AY, Scherbinin AV, Sazhnikov VA, Bagaturyants AA, Alfimov MV. Vibronic bandshape of the absorption spectra of dibenzoylmethanatoboron difluoride derivatives: analysis based on ab initio calculations. Phys Chem Chem Phys 2015;17:16997-7006. [DOI: 10.1039/c5cp02085a] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
11
Qin M, Shen HZ, Zhao XL, Yi XX. Dynamics and quantumness of excitation energy transfer through a complex quantum network. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2014;90:042140. [PMID: 25375471 DOI: 10.1103/physreve.90.042140] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/13/2014] [Indexed: 06/04/2023]
12
Nalbach P, Achner AJA, Frey M, Grosser M, Bressler C, Thorwart M. Hydration shell effects in the relaxation dynamics of photoexcited Fe-II complexes in water. J Chem Phys 2014;141:044304. [DOI: 10.1063/1.4890528] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
13
Shabani A, Mohseni M, Rabitz H, Lloyd S. Numerical evidence for robustness of environment-assisted quantum transport. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2014;89:042706. [PMID: 24827277 DOI: 10.1103/physreve.89.042706] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/22/2013] [Indexed: 06/03/2023]
14
Mohseni M, Shabani A, Lloyd S, Rabitz H. Energy-scales convergence for optimal and robust quantum transport in photosynthetic complexes. J Chem Phys 2014;140:035102. [DOI: 10.1063/1.4856795] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]  Open
15
Briegel HJ, Popescu S. Intra-molecular refrigeration in enzymes. Proc Math Phys Eng Sci 2013. [DOI: 10.1098/rspa.2011.0290] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
16
Yao Y, Duan L, Lü Z, Wu CQ, Zhao Y. Dynamics of the sub-Ohmic spin-boson model: a comparison of three numerical approaches. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2013;88:023303. [PMID: 24032962 DOI: 10.1103/physreve.88.023303] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/27/2013] [Revised: 07/15/2013] [Indexed: 06/02/2023]
17
Martens CC. Quantum dephasing of a two-state system by a nonequilibrium harmonic oscillator. J Chem Phys 2013;139:024109. [PMID: 23862931 DOI: 10.1063/1.4811219] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]  Open
18
Bhattacharyya P, Sebastian KL. Adiabatic Eigenfunction Based Approach to Coherent Transfer: Application to the Fenna–Matthews–Olson (FMO) Complex and the Role of Correlations in the Efficiency of Energy Transfer. J Phys Chem A 2013;117:8806-13. [DOI: 10.1021/jp4045463] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
19
Bhattacharyya P, Sebastian KL. Adiabatic eigenfunction-based approach for coherent excitation transfer: an almost analytical treatment of the Fenna-Matthews-Olson complex. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2013;87:062712. [PMID: 23848720 DOI: 10.1103/physreve.87.062712] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/23/2013] [Revised: 05/24/2013] [Indexed: 06/02/2023]
20
Parkhill JA, Markovich T, Tempel DG, Aspuru-Guzik A. A correlated-polaron electronic propagator: Open electronic dynamics beyond the Born-Oppenheimer approximation. J Chem Phys 2012;137:22A547. [DOI: 10.1063/1.4762441] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
21
Valleau S, Saikin SK, Yung MH, Aspuru Guzik A. Exciton transport in thin-film cyanine dye J-aggregates. J Chem Phys 2012;137:034109. [PMID: 22830685 DOI: 10.1063/1.4732122] [Citation(s) in RCA: 63] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]  Open
22
Jang S, Cheng YC. Resonance energy flow dynamics of coherently delocalized excitons in biological and macromolecular systems: Recent theoretical advances and open issues. WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE 2012. [DOI: 10.1002/wcms.1111] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
23
Shabani A, Mohseni M, Rabitz H, Lloyd S. Efficient estimation of energy transfer efficiency in light-harvesting complexes. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2012;86:011915. [PMID: 23005460 DOI: 10.1103/physreve.86.011915] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/13/2012] [Indexed: 06/01/2023]
24
Albert VV. Quantum Rabi model for N-state atoms. PHYSICAL REVIEW LETTERS 2012;108:180401. [PMID: 22681049 DOI: 10.1103/physrevlett.108.180401] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/15/2011] [Revised: 03/04/2012] [Indexed: 06/01/2023]
25
Borshch VN, Andreeva ER, Kuz’min SG, Vozovikov IN. New medicines and approaches to treatment of atherosclerosis. RUSS J GEN CHEM+ 2012. [DOI: 10.1134/s1070363212030346] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
26
Shim S, Rebentrost P, Valleau S, Aspuru-Guzik A. Atomistic study of the long-lived quantum coherences in the Fenna-Matthews-Olson complex. Biophys J 2012;102:649-60. [PMID: 22325289 PMCID: PMC3274801 DOI: 10.1016/j.bpj.2011.12.021] [Citation(s) in RCA: 180] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2011] [Revised: 11/08/2011] [Accepted: 12/05/2011] [Indexed: 12/16/2022]  Open
27
Hossein-Nejad H, Olaya-Castro A, Scholes GD. Phonon-mediated path-interference in electronic energy transfer. J Chem Phys 2012;136:024112. [DOI: 10.1063/1.3675844] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]  Open
28
Pachón LA, Brumer P. Computational methodologies and physical insights into electronic energy transfer in photosynthetic light-harvesting complexes. Phys Chem Chem Phys 2012;14:10094-108. [DOI: 10.1039/c2cp40815e] [Citation(s) in RCA: 82] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
29
Mennucci B, Curutchet C. The role of the environment in electronic energy transfer: a molecular modeling perspective. Phys Chem Chem Phys 2011;13:11538-50. [PMID: 21597605 DOI: 10.1039/c1cp20601j] [Citation(s) in RCA: 50] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
30
Biological water: A critique. Chem Phys Lett 2011. [DOI: 10.1016/j.cplett.2010.12.077] [Citation(s) in RCA: 236] [Impact Index Per Article: 18.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
31
Martens CC. Communication: Decoherence in a nonequilibrium environment: an analytically solvable model. J Chem Phys 2010;133:241101. [PMID: 21197966 DOI: 10.1063/1.3507870] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]  Open
32
Nalbach P, Thorwart M. Multiphonon transitions in the biomolecular energy transfer dynamics. J Chem Phys 2010;132:194111. [PMID: 20499955 DOI: 10.1063/1.3428385] [Citation(s) in RCA: 44] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
33
Cai J, Popescu S, Briegel HJ. Dynamic entanglement in oscillating molecules and potential biological implications. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2010;82:021921. [PMID: 20866851 DOI: 10.1103/physreve.82.021921] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/08/2010] [Revised: 06/14/2010] [Indexed: 05/29/2023]
34
Rebentrost P, Chakraborty R, Aspuru-Guzik A. Non-Markovian quantum jumps in excitonic energy transfer. J Chem Phys 2010;131:184102. [PMID: 19916593 DOI: 10.1063/1.3259838] [Citation(s) in RCA: 114] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
35
Wilde MM, McCracken JM, Mizel A. Could light harvesting complexes exhibit non-classical effects at room temperature? Proc Math Phys Eng Sci 2009. [DOI: 10.1098/rspa.2009.0575] [Citation(s) in RCA: 55] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
36
Zhang L, Yang Y, Kao YT, Wang L, Zhong D. Protein hydration dynamics and molecular mechanism of coupled water-protein fluctuations. J Am Chem Soc 2009;131:10677-91. [PMID: 19586028 DOI: 10.1021/ja902918p] [Citation(s) in RCA: 155] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
37
Anomalous surplus energy transfer observed with multiple FRET acceptors. PLoS One 2009;4:e8031. [PMID: 19946626 PMCID: PMC2778011 DOI: 10.1371/journal.pone.0008031] [Citation(s) in RCA: 61] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2009] [Accepted: 11/02/2009] [Indexed: 11/19/2022]  Open
38
Jang S. Theory of coherent resonance energy transfer for coherent initial condition. J Chem Phys 2009;131:164101. [DOI: 10.1063/1.3247899] [Citation(s) in RCA: 89] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
39
Thorwart M, Eckel J, Reina J, Nalbach P, Weiss S. Enhanced quantum entanglement in the non-Markovian dynamics of biomolecular excitons. Chem Phys Lett 2009. [DOI: 10.1016/j.cplett.2009.07.053] [Citation(s) in RCA: 125] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
40
McKemmish LK, Reimers JR, McKenzie RH, Mark AE, Hush NS. Penrose-Hameroff orchestrated objective-reduction proposal for human consciousness is not biologically feasible. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2009;80:021912. [PMID: 19792156 DOI: 10.1103/physreve.80.021912] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/15/2008] [Revised: 05/29/2009] [Indexed: 05/28/2023]
41
Zhong D. Hydration Dynamics and Coupled Water-Protein Fluctuations Probed by Intrinsic Tryptophan. ADVANCES IN CHEMICAL PHYSICS 2009. [DOI: 10.1002/9780470508602.ch3] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/12/2023]
42
Weak, strong, and coherent regimes of Fröhlich condensation and their applications to terahertz medicine and quantum consciousness. Proc Natl Acad Sci U S A 2009;106:4219-24. [PMID: 19251667 DOI: 10.1073/pnas.0806273106] [Citation(s) in RCA: 77] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
43
Caruso F, Chin AW, Datta A, Huelga SF, Plenio MB. Highly efficient energy excitation transfer in light-harvesting complexes: The fundamental role of noise-assisted transport. J Chem Phys 2009. [DOI: 10.1063/1.3223548] [Citation(s) in RCA: 499] [Impact Index Per Article: 33.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
44
Jang S, Cheng YC, Reichman DR, Eaves JD. Theory of coherent resonance energy transfer. J Chem Phys 2008;129:101104. [DOI: 10.1063/1.2977974] [Citation(s) in RCA: 224] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]  Open
45
Chen HC, You ZQ, Hsu CP. The mediated excitation energy transfer: Effects of bridge polarizability. J Chem Phys 2008;129:084708. [DOI: 10.1063/1.2970091] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]  Open
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