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Krivdin LB. Recent advances in computational 31 P NMR: Part 1. Chemical shifts. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2020; 58:478-499. [PMID: 31703153 DOI: 10.1002/mrc.4965] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/18/2019] [Revised: 10/19/2019] [Accepted: 10/23/2019] [Indexed: 06/10/2023]
Abstract
This is the first part of two closely related reviews dealing with the computation of phosphorus-31 nuclear magnetic resonance chemical shifts in a wide series of organophosphorus compounds including complexes, clusters, and bioorganic phosphorus compounds. In particular, the analysis of the accuracy factors, such as substitution effects, solvent effects, vibrational corrections, and relativistic effects, is presented. This review is dedicated to the Full Member of the Russian Academy of Sciences Professor Boris A. Trofimov in view of his invaluable contribution to the field of synthesis, nuclear magnetic resonance, and computation studies of organophosphorus compounds.
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Affiliation(s)
- Leonid B Krivdin
- A. E. Favorsky Irkutsk Institute of Chemistry, Siberian Branch of the Russian Academy of Sciences, Irkutsk, Russia
- Angarsk State Technical University, Irkutsk Region, Russia
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2
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Erkin AV, Gurzhiy VV, Krutikov VI, Neporozhneva OV. Quantum Chemistry, NMR Spectroscopy, and Single-Crystal Diffractometry Methods in the Analysis of Protonation Pathways of 2-Amino-4-benzylsulfanyl-6-methylpyrimidines. RUSS J GEN CHEM+ 2019. [DOI: 10.1134/s1070363219010031] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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3
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Latypov SK, Kondrashova SA, Galyametdinova IV, Semenov VE, Reznik VS. Hydrogen's isotopic exchange reaction in the C-methyl sides in the medicinal agent xymedon: NMR spectroscopy and ab initio calculations. J PHYS ORG CHEM 2018. [DOI: 10.1002/poc.3804] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Shamil K. Latypov
- A.E. Arbuzov Institute of Organic and Physical Chemistry, Kazan Scientific Center; Russian Academy of Sciences; Kazan Russian Federation
| | - Svetlana A. Kondrashova
- A.E. Arbuzov Institute of Organic and Physical Chemistry, Kazan Scientific Center; Russian Academy of Sciences; Kazan Russian Federation
- Kazan Federal University; Kazan Russian Federation
| | - Irina V. Galyametdinova
- A.E. Arbuzov Institute of Organic and Physical Chemistry, Kazan Scientific Center; Russian Academy of Sciences; Kazan Russian Federation
| | - Vyacheslav E. Semenov
- A.E. Arbuzov Institute of Organic and Physical Chemistry, Kazan Scientific Center; Russian Academy of Sciences; Kazan Russian Federation
| | - Vladimir S. Reznik
- A.E. Arbuzov Institute of Organic and Physical Chemistry, Kazan Scientific Center; Russian Academy of Sciences; Kazan Russian Federation
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Latypov SK, Polyancev FM, Yakhvarov DG, Sinyashin OG. Quantum chemical calculations of31P NMR chemical shifts: scopes and limitations. Phys Chem Chem Phys 2015; 17:6976-87. [DOI: 10.1039/c5cp00240k] [Citation(s) in RCA: 63] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
High level of theory is not necessarily needed to obtain rather accurate predictions of31P chemical shifts by GIAO method. For example, the PBE1PBE/6-311G(2d,2p)//PBE1PBE/6-31+G(d) combination allowed to obtain good results for variety of middle-size organophosphorus compounds (M= 200–700 Da).
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Affiliation(s)
- Shamil K. Latypov
- A.E. Arbuzov Institute of Organic and Physical Chemistry
- Kazan Scientific Center
- Russian Academy of Sciences
- Kazan
- Russian Federation
| | - Fedor M. Polyancev
- A.E. Arbuzov Institute of Organic and Physical Chemistry
- Kazan Scientific Center
- Russian Academy of Sciences
- Kazan
- Russian Federation
| | - Dmitry G. Yakhvarov
- A.E. Arbuzov Institute of Organic and Physical Chemistry
- Kazan Scientific Center
- Russian Academy of Sciences
- Kazan
- Russian Federation
| | - Oleg G. Sinyashin
- A.E. Arbuzov Institute of Organic and Physical Chemistry
- Kazan Scientific Center
- Russian Academy of Sciences
- Kazan
- Russian Federation
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Latypov SK, Strelnik AG, Ignatieva SN, Hey-Hawkins E, Balueva AS, Karasik AA, Sinyashin OG. Structure and Dynamics of P,N-Containing Heterocycles and Their Metal Complexes in Solution. J Phys Chem A 2012; 116:3182-93. [PMID: 22414208 DOI: 10.1021/jp209281c] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Affiliation(s)
- Shamil K. Latypov
- State Budgetary-Funded Institution of Science, A. E. Arbuzov Institute of Organic and Physical Chemistry of Kazan Scientific Center of Russian Academy of Sciences, 420088 Kazan, 8 Arbuzov str., Russia
| | - Anna G. Strelnik
- State Budgetary-Funded Institution of Science, A. E. Arbuzov Institute of Organic and Physical Chemistry of Kazan Scientific Center of Russian Academy of Sciences, 420088 Kazan, 8 Arbuzov str., Russia
| | - Svetlana N. Ignatieva
- State Budgetary-Funded Institution of Science, A. E. Arbuzov Institute of Organic and Physical Chemistry of Kazan Scientific Center of Russian Academy of Sciences, 420088 Kazan, 8 Arbuzov str., Russia
| | - Evamarie Hey-Hawkins
- Institut für Anorganische Chemie der Universität Leipzig, Johannisallee 29, D-04103 Leipzig, Germany
| | - Anna S. Balueva
- State Budgetary-Funded Institution of Science, A. E. Arbuzov Institute of Organic and Physical Chemistry of Kazan Scientific Center of Russian Academy of Sciences, 420088 Kazan, 8 Arbuzov str., Russia
| | - Andrey A. Karasik
- State Budgetary-Funded Institution of Science, A. E. Arbuzov Institute of Organic and Physical Chemistry of Kazan Scientific Center of Russian Academy of Sciences, 420088 Kazan, 8 Arbuzov str., Russia
| | - Oleg G. Sinyashin
- State Budgetary-Funded Institution of Science, A. E. Arbuzov Institute of Organic and Physical Chemistry of Kazan Scientific Center of Russian Academy of Sciences, 420088 Kazan, 8 Arbuzov str., Russia
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Shagidullin AR, Katsyuba SA, Avvakumova LV, Chernova AV, Mikhailov AS, Reznik VS. Spectral study of the molecular structure of some 2-methylthio-6-methyl-4-alkyl- and alkylaminopyrimidines. RUSS J GEN CHEM+ 2011. [DOI: 10.1134/s1070363211100215] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Semenov VE, Krylova ES, Galyametdinova IV, Chernova AV, Kharlamov SV, Latypov SK, Reznik VS. Synthesis and reactivity of acyclic and macrocyclic uracils bridged with five-membered heterocycles. Tetrahedron 2011. [DOI: 10.1016/j.tet.2011.07.034] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Semenov VE, Mikhailov AS, Voloshina AD, Kulik NV, Nikitashina AD, Zobov VV, Kharlamov SV, Latypov SK, Reznik VS. Antimicrobial activity of pyrimidinophanes with thiocytosine and uracil moieties. Eur J Med Chem 2011; 46:4715-24. [DOI: 10.1016/j.ejmech.2011.05.034] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2011] [Revised: 05/11/2011] [Accepted: 05/13/2011] [Indexed: 10/18/2022]
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Voronin MA, Gabdrakhmanov DR, Semenov VE, Valeeva FG, Mikhailov AS, Nizameev IR, Kadirov MK, Zakharova LY, Reznik VS, Konovalov AI. Novel bolaamphiphilic pyrimidinophane as building block for design of nanosized supramolecular systems with concentration-dependent structural behavior. ACS APPLIED MATERIALS & INTERFACES 2011; 3:402-409. [PMID: 21261278 DOI: 10.1021/am101000j] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
A new macrocyclic bolaamphiphile with thiocytosine fragments in the molecule (B1) has been synthesized and advanced as perspective platform for the design of soft supramolecular systems. Strong concentration-dependent structural behavior is observed in the water-DMF (20% vol) solution of B1 as revealed by methods of tensiometry, conductometry, dynamic light scattering, and atomic force microscopy. Two breakpoints are observed in the surface tension isotherms. The first one, around 0.002 M, is identified as a critical micelle concentration (cmc), whereas the second critical concentration of 0.01 M is a turning point between the two models of the association involved. Large aggregates of ca. 200 nm are mostly formed beyond the cmc, whereas small micelle-like aggregates exist above 0.01 M. The growth of aggregates between these critical points occurs, resulting in a gel-like behavior. An unusual decrease in the solution pH with concentration takes place, which is assumed to originate from the steric hindrance around the B1 head groups. Because of controllable structural behavior, B1 is assumed to be a candidate for the development of biomimetic catalysts, nanocontainers, drug and gene carriers, etc.
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Affiliation(s)
- Mikhail A Voronin
- A. E. Arbuzov Institute of Organic and Physical Chemistry of the Russian Academy of Sciences, 8, ul.Akad. Arbuzov, Kazan, 420088, Russia
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Structure and dynamics of some macrocyclic pyrimidine derivatives. Russ Chem Bull 2010. [DOI: 10.1007/s11172-009-0350-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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11
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Chimichi S, Boccalini M, Matteucci A, Kharlamov SV, Latypov SK, Sinyashin OG. GIAO DFT 13C/15N chemical shifts in regioisomeric structure determination of fused pyrazoles. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2010; 48:607-613. [PMID: 20589725 DOI: 10.1002/mrc.2633] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/29/2023]
Abstract
The combined use of two-dimensional NMR correlation experiments and gauge including atomic orbital density functional theory in (13)C NMR chemical shift (CS) calculations allowed reliable and simple structural determination of regioisomeric heterocyclic systems that originate from the reactions of acylquinolinones with substituted hydrazines. Moreover, the results of differential analysis between the calculated (15)N NMR CSs for hypothetical structures and the experimental data of the title azaheterocyclic systems were even more advantageous with respect to (13)C because there was no need for correlational analysis: structures of the regioisomeric compounds could be determined just by direct comparison.
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Naumov RN, Kozlov AV, Kanunnikov KB, Gómez-Ruiz S, Hey-Hawkins E, Latypov SK, Karasik AA, Sinyashin OG. The first example of stereoselective self-assembly of a cryptand containing four asymmetric intracyclic phosphane groups. Tetrahedron Lett 2010. [DOI: 10.1016/j.tetlet.2009.12.056] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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13
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Mamedov VA, Kalinin AA, Balandina AA, Rizvanov IK, Latypov SK. An efficient method for the synthesis of imidazo[1,5-a]quinoxalines from 3-acylquinoxalinones and benzylamines via a novel imidazoannulation. Tetrahedron 2009. [DOI: 10.1016/j.tet.2009.08.081] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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Romanova IP, Bogdanov AV, Mironov VF, Larionova OA, Latypov SK, Balandina AA, Yakhvarov DG, Sinyashin OG. Fullerene C60 as an effective trap of acenaphthenone carbene generated in the reaction of acenaphthenequinone with hexaethyltriaminophosphine. MENDELEEV COMMUNICATIONS 2009. [DOI: 10.1016/j.mencom.2009.11.003] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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Jimenez Y, Strepka AM, Borgohain MD, Hinojosa PA, Moehring GA. Ortho-metalation, rotational isomerization, and hydride–hydride coupling at rhenium (V) polyhydride complexes stabilized by aromatic amine ligands. Inorganica Chim Acta 2009. [DOI: 10.1016/j.ica.2009.02.038] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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Semenov VE, Mikhailov AS, Romanova ES, Voloshina AD, Kulik NV, Uraleva SY, Kozlov AV, Latypov SK, Reznik VS. Pyrimidinophane p-toluenesulfonate—Water-soluble pyrimidine-containing macrocycles. RUSS J GEN CHEM+ 2009. [DOI: 10.1134/s1070363209010216] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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17
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Kozlov AV, Semenov VE, Mikhailov AS, Reznik VS, Latypov SK. Structure and dynamics of pyrimidine-based macrocycles in solution. Tetrahedron Lett 2008. [DOI: 10.1016/j.tetlet.2008.09.047] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Latypov S, Balandina A, Boccalini M, Matteucci A, Usachev K, Chimichi S. Structure Determination of Regioisomeric Fused Heterocycles by the Combined Use of 2D NMR Experiments and GIAO DFT13C Chemical Shifts. European J Org Chem 2008. [DOI: 10.1002/ejoc.200800550] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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