1
|
Zheng HF, Xu J, Ding YH. Mono-silicon isoelectronic replacement in CAl 4 : van't hoff/le bel carbon or not? J Comput Chem 2020; 41:119-128. [PMID: 31663141 DOI: 10.1002/jcc.26079] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2019] [Revised: 09/09/2019] [Accepted: 09/09/2019] [Indexed: 11/09/2022]
Abstract
In cluster studies, the isoelectronic replacement strategy has been successfully used to introduce new elements into a known structure while maintaining the desired topology. The well-known penta-atomic 18 valence electron (ve) species C Al 4 2 - and its Al- /Si or Al/Si+ isoelectronically replaced clusters CAl3 Si- , CAl2 Si2 , C AlSi 3 - , and C Si 4 2 + , all possess the same anti-van't Hoff/Le Bel skeletons, that is, nontraditional planar tetracoordinate carbon (ptC) structure. In this article, however, we found that such isoelectronic replacement between Si and Al does not work for the 16ve-CAl4 with the traditional van't Hoff/Le Bel tetrahedral carbon (thC) and its isoelectronic derivatives CAl3 X (X = Ga/In/Tl). At the level of CCSD(T)/def2-QZVP//B3LYP/def2-QZVP, none of the global minima of the 16ve mono-Si-containing clusters CAl2 SiX+ (X = Al/Ga/In/Tl) maintains thC as the parent CAl4 does. Instead, X = Al/Ga globally favors an unusual ptC structure that has one long C─X distance yet with significant bond index value, and X = In/Tl prefers the planar tricoordinate carbon. The frustrated formation of thC in these clusters is ascribed to the CSi bonding that prefers a planar fashion. Inclusion of chloride ion would further stabilize the ptC of CAl2 SiAl+ and CAl2 SiGa+ . The unexpectedly disclosed CAl2 SiAl+ and CAl2 SiGa+ represent the first type of 16ve-cationic ptCs with multiple bonds. © 2019 Wiley Periodicals, Inc.
Collapse
Affiliation(s)
- Hai-Feng Zheng
- Laboratory of Theoretical and Computational Chemistry, Institute of Theoretical Chemistry, Jilin University, Changchun, 130023, People's Republic of China
| | - Jing Xu
- Department of Optical Engineering, Zhejiang A&F University, Lin'an, Zhejiang, 311300, People's Republic of China
| | - Yi-Hong Ding
- Laboratory of Theoretical and Computational Chemistry, Institute of Theoretical Chemistry, Jilin University, Changchun, 130023, People's Republic of China
| |
Collapse
|
2
|
Xue W, Fu X, Tang Z, Luo G, An W, Li T, Luo Y, Zhou X, Luo Y. Computational studies on the effects of substituents on the structure and property of zinc dialkyldithiophosphates. COMPUT THEOR CHEM 2017. [DOI: 10.1016/j.comptc.2016.11.027] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
|
3
|
Ohno K. Study of Potential Energy Surfaces towards Global Reaction Route Mapping. CHEM REC 2016; 16:2198-2218. [PMID: 27059804 DOI: 10.1002/tcr.201500284] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2015] [Indexed: 11/11/2022]
Abstract
The potential energy surface (PES) is just a theoretical construct based on the Born-Oppenheimer approximation, but it underlies various phenomena, including molecular vibrations, collisional ionizations, and chemical reactions. This account describes how a new idea for global reaction route mapping (GRRM), which had seemed to be impossible for chemical systems with more than three atoms, was born and has been developed during the course of the study of the PES. GRRM has pioneered new fields of chemistry. Furthermore, techniques for GRRM are still developing, and GRRM is further extending its application to various areas of chemistry and chemical physics.
Collapse
Affiliation(s)
- Koichi Ohno
- Institute for Quantum Chemical Exploration, Minato-ku, Tokyo, 108-0022, Japan.
| |
Collapse
|
4
|
Maeda S, Taketsugu T, Morokuma K, Ohno K. Anharmonic Downward Distortion Following for Automated Exploration of Quantum Chemical Potential Energy Surfaces. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2014. [DOI: 10.1246/bcsj.20140189] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Satoshi Maeda
- Department of Chemistry, Faculty of Science, Hokkaido University
| | | | - Keiji Morokuma
- Fukui Institute for Fundamental Chemistry, Kyoto University
- Cherry L. Emerson Center for Scientific Computation and Department of Chemistry, Emory University
| | - Koichi Ohno
- Graduate School of Science, Tohoku University
- Institute for Quantum Chemical Exploration
| |
Collapse
|
5
|
Kaur G, Vikas. The mechanism of tautomerisation and geometric isomerisation in thioformic acid and its water complexes: exploring chemical pathways for water migration. Phys Chem Chem Phys 2014; 16:24401-16. [PMID: 25301013 DOI: 10.1039/c4cp03481c] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A systematic and automated search for chemical pathways of isomerisation between geometric and tautomeric forms of gas-phase thioformic acid (TFA) and its water complexes is performed using a global reaction route mapping (GRRM) method, and an uncovered pathway for cis-trans isomerisation in the thiol form of TFA has been explored through computations performed at CCSD(T)/6-311++G(2d,2p)//B3LYP/6-311++G(2d,2p) level of the coupled cluster and density functional theories. To explore the routes for water migration, a detailed analysis of complexes of TFA with a single-water molecule is presented. Notably, during the isomerisation process in TFA, a positive catalytic effect of water was observed that can arise either by the stabilization of the reactant and/or of the transition state through extensive hydrogen bonding. Interesting behavior of isomeric forms of TFA along the pathways analysed is revealed through the Gibbs free-energy change and its temperature-dependence. The cis form of TFA(thiol) in the complexes of TFA with a single-water molecule is found to be thermodynamically equally feasible as the trans form which though is known to be the most dominating among the isomeric forms of TFA. Besides these, various complexes of TFA with two-water molecules have also been explored to study the hydrogen-bonding interaction through natural bond-orbital (NBO) analysis. The complexes of TFA with two-water molecules have also been characterized using spectral features including vibrational frequency analysis, and the effect of complexation has been observed by noting frequency shift.
Collapse
Affiliation(s)
- Gurpreet Kaur
- Quantum Chemistry Group, Department of Chemistry & Centre of Advanced Studies in Chemistry, Panjab University, Chandigarh-160014, India.
| | | |
Collapse
|
6
|
Tang Z, Kong Q, Luo Y, Xue W, Qu J, Chen H, Fu X. Theoretical studies on the structure and property of alkylated dipenylamine antioxidants. JOURNAL OF THEORETICAL & COMPUTATIONAL CHEMISTRY 2014. [DOI: 10.1142/s0219633614500357] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Diarylamines ( Ar 2 NH ) are generally used as antioxidants to inhibit or retard the auto-oxidation degradation of lubricating oil by trapping ROO• radicals. In the present study, 20 kinds of 4,4′-disubstituted diphenylamine compounds were investigated through density functional theory (DFT) calculations. The results indicate that the N – H bond dissociation enthalpy (BDE) linearly correlates its one-electron oxidation potential, the difference in Mulliken atomic charge on the two atoms of N – H bond, the reaction rate constant of hydrogen transfer from Ar 2 NH to peroxy radical, and the chemical hardness of the resulted Ar 2 N • radical, respectively. The substitution of alkyl groups (electron-donating groups) decreases the N – H BDE, one-electron oxidation potential and the reaction rate constant, while that of significant electron-withdrawing groups such as - NO 2 and - COOCH 3 increases these three parameters. The electron-donating groups such as alkyls could improve the antioxidation performance of 4,4′-disubstitued diphenylamines whereas electron-withdrawing groups have the contrary effect. In addition, the frontier molecular orbital of Ar 2 NH has been also analyzed.
Collapse
Affiliation(s)
- Zhongping Tang
- College of Chemistry, Sichuan University, Chengdu 610064, P. R. China
- PetroChina Lanzhou Lubricating Oil R&D Institute, Lanzhou 730060, P. R. China
| | - Qingwei Kong
- State Key Laboratory of Fine Chemicals, School of Pharmaceutical Science and Technology, Dalian University of Technology, Dalian 116024, P. R. China
| | - Yi Luo
- State Key Laboratory of Fine Chemicals, School of Pharmaceutical Science and Technology, Dalian University of Technology, Dalian 116024, P. R. China
| | - Weiguo Xue
- PetroChina Lanzhou Lubricating Oil R&D Institute, Lanzhou 730060, P. R. China
| | - Jingping Qu
- State Key Laboratory of Fine Chemicals, School of Pharmaceutical Science and Technology, Dalian University of Technology, Dalian 116024, P. R. China
| | - Hua Chen
- College of Chemistry, Sichuan University, Chengdu 610064, P. R. China
| | - Xisheng Fu
- PetroChina Lanzhou Lubricating Oil R&D Institute, Lanzhou 730060, P. R. China
| |
Collapse
|
7
|
Kaur G, Vikas. Exploring water catalysis in the reaction of thioformic acid with hydroxyl radical: a global reaction route mapping perspective. J Phys Chem A 2014; 118:4019-29. [PMID: 24835635 DOI: 10.1021/jp503213n] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
Hydrogen abstraction pathways, in the gas-phase reaction of tautomers of thioformic acid (TFA), TFA(thiol), and TFA(thione), with hydroxyl radical in the presence and absence of single water molecule acting as a catalyst, is investigated with high-level quantum mechanical calculations at CCSD(T)/6-311++G(2d,2p)//MP2/6-311++G(2d,2p), CCSD(T)/6-311++G(d,p)//DFT/BHandHLYP/6-311++G(d,p), and DFT/B3LYP/6-311++G(2df,2p) levels of the theory. A systematic and automated search of the potential energy surface (PES) for the reaction pathways is performed using the global reaction route mapping (GRRM) method that employs an uphill walking technique to search prereaction complexes and transition states. The computations reveal significant lowering of the PES and substantial reduction in the activation energy for the hydrogen abstraction pathway in the presence of water, thereby proving water as an efficient catalyst in the reaction of both the TFA tautomers with OH radical. The hydrogen-bonding interactions are observed to be responsible for the large catalytic effect of water. Notably, in the case of TFA(thiol), formyl hydrogen abstraction is observed to be kinetically more favorable, while acidic hydrogen abstraction is observed to be thermodynamically more feasible. Interestingly, in the case of TFA(thione), reaction pathways involving only formyl hydrogen abstraction were observed to be feasible. The water-catalyzed hydrogen abstraction reaction of TFA with hydroxyl radical, investigated in this work, can provide significant insights into the corresponding reaction in the biological systems.
Collapse
Affiliation(s)
- Gurpreet Kaur
- Quantum Chemistry Group, Department of Chemistry & Centre of Advanced Studies in Chemistry, Panjab University , Chandigarh 160014, India
| | | |
Collapse
|
8
|
Moteki M, Maeda S, Ohno K. Systematic Search for Isomerization Pathways of Hexasilabenzene for Finding Its Kinetic Stability. Organometallics 2009. [DOI: 10.1021/om800881y] [Citation(s) in RCA: 51] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Masahiro Moteki
- Department of Chemistry, Graduate School of Science, Tohoku University, Aramaki, Aoba-ku, Sendai 980-8578, Japan
| | - Satoshi Maeda
- Department of Chemistry, Graduate School of Science, Tohoku University, Aramaki, Aoba-ku, Sendai 980-8578, Japan
| | - Koichi Ohno
- Department of Chemistry, Graduate School of Science, Tohoku University, Aramaki, Aoba-ku, Sendai 980-8578, Japan
| |
Collapse
|
9
|
Luo Y, Maeda S, Ohno K. Decomposition of alkyl hydroperoxide by a copper(I) complex: insights from density functional theory. Tetrahedron Lett 2008. [DOI: 10.1016/j.tetlet.2008.09.065] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
|