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Ahirwar MB, Gadre SR, Deshmukh MM. On the Short-Range Nature of Cooperativity in Hydrogen-Bonded Large Molecular Clusters. J Phys Chem A 2023; 127:4394-4406. [PMID: 37186960 DOI: 10.1021/acs.jpca.3c00359] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/17/2023]
Abstract
The variation in the hydrogen bond (HB) strength has considerable consequences on the physicochemical properties of molecular clusters. Such a variation mainly arises due to the cooperative/anti-cooperative networking effect of neighboring molecules connected by HBs. In the present work, we systematically study the effect of neighboring molecules on the strength of an individual HB and the respective cooperativity contribution toward each of them in a variety of molecular clusters. For this purpose, we propose a use of a small model of a large molecular cluster called the spherical shell-1 (SS1) model. This SS1 model is constructed by placingg the spheres of an appropriate radius centered on X and Y atoms of the X-H···Y HB under consideration. The molecules falling within these spheres constitute the SS1 model. Utilizing this SS1 model, the individual HB energies are calculated within the molecular tailoring approach-based framework and the results are compared with their actual counterparts. It is found that the SS1 is a reasonably good model of large molecular clusters, providing 81-99% of the total HB energy estimated using the actual molecular clusters. This in turn suggests that the maximum cooperativity contribution toward a particular HB is due to the fewer number of molecules (in the SS1 model) directly interacting with two molecules involved in its formation. We further demonstrate that the remaining part of the energy or cooperativity (∼1 to 19%) is captured by the molecules falling in the second spherical shell (SS2) centered on the hetero-atom of the molecules in the SS1 model. The effect of increasing size of a cluster on the strength of a particular HB, calculated by the SS1 model, is also investigated. The calculated value of the HB energy remains unchanged with the increase in the size of a cluster, emphasizing the short-ranged nature of the HB cooperativity in neutral molecular clusters.
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Affiliation(s)
- Mini Bharati Ahirwar
- Department of Chemistry, Dr. Harisingh Gour Vishwavidyalaya (A Central University), Sagar 470003, India
| | - Shridhar R Gadre
- Department of Scientific Computing, Modelling, and Simulation, Savitribai Phule Pune University, Pune 411007, India
| | - Milind M Deshmukh
- Department of Chemistry, Dr. Harisingh Gour Vishwavidyalaya (A Central University), Sagar 470003, India
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Levanov AV, Isaikina OY, Lunin VV. Enthalpies of the formation and decomposition of hydrogen trioxide HOOOH in an aqueous solution. RUSSIAN JOURNAL OF PHYSICAL CHEMISTRY A 2016. [DOI: 10.1134/s0036024416110145] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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Structure of hydrogen tetroxide in gas phase and in aqueous environments: relationship to the hydroperoxyl radical self-reaction. Struct Chem 2015. [DOI: 10.1007/s11224-015-0717-2] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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Hydrogen polyoxides H2O3 and H2O4 as components of peroxy radical condensate obtained from electro-dissociated water vapor. Chem Phys 2015. [DOI: 10.1016/j.chemphys.2014.11.020] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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Cerkovnik J, Plesničar B. Recent advances in the chemistry of hydrogen trioxide (HOOOH). Chem Rev 2013; 113:7930-51. [PMID: 23808683 DOI: 10.1021/cr300512s] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Affiliation(s)
- Janez Cerkovnik
- Department of Chemistry, Faculty of Chemistry and Chemical Technology, University of Ljubljana , 1000 Ljubljana, Slovenia
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Stabilization of metastable hydrogen trioxide (HOOOH) and the hydrotrioxyl radical (HOOO) by complexation with sulfuric acid. A theoretical study. COMPUT THEOR CHEM 2013. [DOI: 10.1016/j.comptc.2013.01.009] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Seo HI, Bahng JA, Kim YC, Kim SJ. Theoretical Approach for the Structures, Energetics and Spectroscopic Properties of (H2O3)n(n = 1-5) Clusters. B KOREAN CHEM SOC 2012. [DOI: 10.5012/bkcs.2012.33.9.3017] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Tuttle T, Cerkovnik J, Koller J, Plesničar B. The Search for Protonated Dihydrogen Trioxide (HOOOH): Insights from Theory and Experiment. J Phys Chem A 2010; 114:8003-8. [DOI: 10.1021/jp103882e] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Tell Tuttle
- WestCHEM, Department of Pure and Applied Chemistry, University of Strathclyde, 295 Cathedral Street, Glasgow, G1 1XL, United Kingdom, and Department of Chemistry, Faculty of Chemistry and Chemical Technology, University of Ljubljana, 1000 Ljubljana, Slovenia
| | - Janez Cerkovnik
- WestCHEM, Department of Pure and Applied Chemistry, University of Strathclyde, 295 Cathedral Street, Glasgow, G1 1XL, United Kingdom, and Department of Chemistry, Faculty of Chemistry and Chemical Technology, University of Ljubljana, 1000 Ljubljana, Slovenia
| | - Jože Koller
- WestCHEM, Department of Pure and Applied Chemistry, University of Strathclyde, 295 Cathedral Street, Glasgow, G1 1XL, United Kingdom, and Department of Chemistry, Faculty of Chemistry and Chemical Technology, University of Ljubljana, 1000 Ljubljana, Slovenia
| | - Božo Plesničar
- WestCHEM, Department of Pure and Applied Chemistry, University of Strathclyde, 295 Cathedral Street, Glasgow, G1 1XL, United Kingdom, and Department of Chemistry, Faculty of Chemistry and Chemical Technology, University of Ljubljana, 1000 Ljubljana, Slovenia
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Martins-Costa M, Anglada JM, Ruiz-López MF. Hyperconjugation in adjacent OO bonds: Remarkable odd/even effects. Chem Phys Lett 2009. [DOI: 10.1016/j.cplett.2009.09.090] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Catir M, Kilic H, Nardello-Rataj V, Aubry JM, Kazaz C. Singlet Oxygen Generation from [Bis(trifluoroacetoxy)iodo]benzene and Hydrogen Peroxide. J Org Chem 2009; 74:4560-4. [DOI: 10.1021/jo9007496] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Mustafa Catir
- Faculty of Sciences, Department of Chemistry, Ataturk University, 25240 Erzurum, Turkey, and LCOM, Equipe Oxydation & Physico-chimie de la Formulation, UMR CNRS 8009, Ecole Nationale Supérieure de Chimie de Lille, BP 90108, F-59652 Villeneuve d’Ascq Cedex, France
| | - Hamdullah Kilic
- Faculty of Sciences, Department of Chemistry, Ataturk University, 25240 Erzurum, Turkey, and LCOM, Equipe Oxydation & Physico-chimie de la Formulation, UMR CNRS 8009, Ecole Nationale Supérieure de Chimie de Lille, BP 90108, F-59652 Villeneuve d’Ascq Cedex, France
| | - Véronique Nardello-Rataj
- Faculty of Sciences, Department of Chemistry, Ataturk University, 25240 Erzurum, Turkey, and LCOM, Equipe Oxydation & Physico-chimie de la Formulation, UMR CNRS 8009, Ecole Nationale Supérieure de Chimie de Lille, BP 90108, F-59652 Villeneuve d’Ascq Cedex, France
| | - Jean-Marie Aubry
- Faculty of Sciences, Department of Chemistry, Ataturk University, 25240 Erzurum, Turkey, and LCOM, Equipe Oxydation & Physico-chimie de la Formulation, UMR CNRS 8009, Ecole Nationale Supérieure de Chimie de Lille, BP 90108, F-59652 Villeneuve d’Ascq Cedex, France
| | - Cavit Kazaz
- Faculty of Sciences, Department of Chemistry, Ataturk University, 25240 Erzurum, Turkey, and LCOM, Equipe Oxydation & Physico-chimie de la Formulation, UMR CNRS 8009, Ecole Nationale Supérieure de Chimie de Lille, BP 90108, F-59652 Villeneuve d’Ascq Cedex, France
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Denis PA, Ornellas FR. Theoretical Characterization of Hydrogen Polyoxides: HOOH, HOOOH, HOOOOH, and HOOO. J Phys Chem A 2008; 113:499-506. [DOI: 10.1021/jp808795e] [Citation(s) in RCA: 50] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Pablo A. Denis
- Computational Nanotechnology, DETEMA, Facultad de Química, UDELAR, CC 1157, 11800 Montevideo, Uruguay, and Instituto de Química, Universidade de São Paulo, Caixa Postal 26077, São Paulo, São Paulo, 05513-970, Brazil
| | - Fernando R. Ornellas
- Computational Nanotechnology, DETEMA, Facultad de Química, UDELAR, CC 1157, 11800 Montevideo, Uruguay, and Instituto de Química, Universidade de São Paulo, Caixa Postal 26077, São Paulo, São Paulo, 05513-970, Brazil
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Cerkovnik J, Plesničar B, Koller J, Tuttle T. Hydrotrioxides Rather than Cyclic Tetraoxides (Tetraoxolanes) as the Primary Reaction Intermediates in the Low-Temperature Ozonation of Aldehydes. The Case of Benzaldehyde. J Org Chem 2008; 74:96-101. [DOI: 10.1021/jo801594n] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Affiliation(s)
- Janez Cerkovnik
- Department of Chemistry, Faculty of Chemistry and Chemical Technology, University of Ljubljana, P.O. Box 537, 1000 Ljubljana, Slovenia, and WestCHEM, Department of Pure and Applied Chemistry, University of Strathclyde, 295 Cathedral Street, Glasgow G1 1XL, U.K
| | - Božo Plesničar
- Department of Chemistry, Faculty of Chemistry and Chemical Technology, University of Ljubljana, P.O. Box 537, 1000 Ljubljana, Slovenia, and WestCHEM, Department of Pure and Applied Chemistry, University of Strathclyde, 295 Cathedral Street, Glasgow G1 1XL, U.K
| | - Jože Koller
- Department of Chemistry, Faculty of Chemistry and Chemical Technology, University of Ljubljana, P.O. Box 537, 1000 Ljubljana, Slovenia, and WestCHEM, Department of Pure and Applied Chemistry, University of Strathclyde, 295 Cathedral Street, Glasgow G1 1XL, U.K
| | - Tell Tuttle
- Department of Chemistry, Faculty of Chemistry and Chemical Technology, University of Ljubljana, P.O. Box 537, 1000 Ljubljana, Slovenia, and WestCHEM, Department of Pure and Applied Chemistry, University of Strathclyde, 295 Cathedral Street, Glasgow G1 1XL, U.K
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Bergant A, Cerkovnik J, Plesničar B, Tuttle T. An Efficient Methyltrioxorhenium(VII)-Catalyzed Transformation of Hydrotrioxides (ROOOH) into Dihydrogen Trioxide (HOOOH). J Am Chem Soc 2008; 130:14086-7. [DOI: 10.1021/ja806411a] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
- Ana Bergant
- Department of Chemistry, Faculty of Chemistry and Chemical Technology, University of Ljubljana, P.O. Box 537, 1000 Ljubljana, Slovenia, and WestCHEM, Department of Pure and Applied Chemistry, University of Strathclyde, 295 Cathedral Street, Glasgow G1 1XL, U.K
| | - Janez Cerkovnik
- Department of Chemistry, Faculty of Chemistry and Chemical Technology, University of Ljubljana, P.O. Box 537, 1000 Ljubljana, Slovenia, and WestCHEM, Department of Pure and Applied Chemistry, University of Strathclyde, 295 Cathedral Street, Glasgow G1 1XL, U.K
| | - Božo Plesničar
- Department of Chemistry, Faculty of Chemistry and Chemical Technology, University of Ljubljana, P.O. Box 537, 1000 Ljubljana, Slovenia, and WestCHEM, Department of Pure and Applied Chemistry, University of Strathclyde, 295 Cathedral Street, Glasgow G1 1XL, U.K
| | - Tell Tuttle
- Department of Chemistry, Faculty of Chemistry and Chemical Technology, University of Ljubljana, P.O. Box 537, 1000 Ljubljana, Slovenia, and WestCHEM, Department of Pure and Applied Chemistry, University of Strathclyde, 295 Cathedral Street, Glasgow G1 1XL, U.K
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