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Nakatani K, Higashi M, Fukuda R, Sato H. An analysis of valence electronic structure from a viewpoint of resonance theory: Tautomerization of formamide and diazadiboretidine. J Comput Chem 2021; 42:1662-1669. [PMID: 34114237 DOI: 10.1002/jcc.26703] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2021] [Revised: 05/03/2021] [Accepted: 05/27/2021] [Indexed: 01/08/2023]
Abstract
The resonance theory is still very useful in understanding the valence electron structure. However, such a viewpoint is not usually obtained by general-purpose quantum chemical calculations, instead requires rather special treatment such as valence bond methods. In this study, we propose a method based on second quantization to analyze the results obtained by general-purpose quantum chemical calculations from the local point of view of electronic structure and analyze diazadiboretidine and the tautomerization of formamide. This method requires only the "PS"-matrix, consisting of the density matrix (P-matrix) and overlap matrix, and can be computed with a comparable load to that of Mulliken population analysis. A key feature of the method is that, unlike other methods proposed so far, it makes direct use of the results of general-purpose quantum chemical calculations.
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Affiliation(s)
- Kaho Nakatani
- Department of Molecular Engineering, Kyoto University, Kyoto, Japan
| | - Masahiro Higashi
- Department of Molecular Engineering, Kyoto University, Kyoto, Japan.,Center for the Promotion of Interdisciplinary Education and Research, Elements Strategy Initiative for Catalysts and Batteries (ESICB), Kyoto University, Kyoto, Japan
| | - Ryoichi Fukuda
- Center for the Promotion of Interdisciplinary Education and Research, Elements Strategy Initiative for Catalysts and Batteries (ESICB), Kyoto University, Kyoto, Japan
| | - Hirofumi Sato
- Department of Molecular Engineering, Kyoto University, Kyoto, Japan.,Center for the Promotion of Interdisciplinary Education and Research, Elements Strategy Initiative for Catalysts and Batteries (ESICB), Kyoto University, Kyoto, Japan.,Fukui Institute for Fundamental Chemistry, Kyoto University, Kyoto, Japan
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2
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Affiliation(s)
- Frank Weinhold
- Theoretical Chemistry and Department of Chemistry University of Wisconsin Madison Wisconsin 53706 USA
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3
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The chemistry, recent advancements and activity descriptors for macrocycles based electrocatalysts in oxygen reduction reaction. Coord Chem Rev 2020. [DOI: 10.1016/j.ccr.2019.213047] [Citation(s) in RCA: 59] [Impact Index Per Article: 14.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
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4
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Kyriakidou K, Karafiloglou P, Glendening E, Weinhold F. To Be or Not to Be: Demystifying the 2nd‐Quantized Picture of Complex Electronic Configuration Patterns in Chemistry with Natural Poly‐Electron Population Analysis. J Comput Chem 2019; 40:1509-1520. [DOI: 10.1002/jcc.25803] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2018] [Revised: 01/23/2019] [Accepted: 02/03/2019] [Indexed: 11/09/2022]
Affiliation(s)
| | | | - Eric Glendening
- Department of Chemistry and Physics Indiana State University Terre Haute Indiana, 47809
| | - Frank Weinhold
- Theoretical Chemistry Institute and Department of Chemistry University of Wisconsin‐Madison Madison Wisconsin, 53706
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5
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Glendening ED, Weinhold F. Efficient evaluation of poly-electron populations in natural bond orbital analysis. Chem Phys Lett 2018. [DOI: 10.1016/j.cplett.2018.09.013] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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6
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Nakano M, Fukuda K, Ito S, Matsui H, Nagami T, Takamuku S, Kitagawa Y, Champagne B. Diradical and Ionic Characters of Open-Shell Singlet Molecular Systems. J Phys Chem A 2017; 121:861-873. [DOI: 10.1021/acs.jpca.6b11647] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Masayoshi Nakano
- Department
of Materials Engineering Science, Graduate School of Engineering Science, Osaka University, Toyonaka, Osaka 560-8531, Japan
- Center
for Spintronics Research Network (CSRN), Graduate School of Engineering
Science, Osaka University, Toyonaka, Osaka 560-8531, Japan
| | - Kotaro Fukuda
- Department
of Materials Engineering Science, Graduate School of Engineering Science, Osaka University, Toyonaka, Osaka 560-8531, Japan
| | - Soichi Ito
- Department
of Materials Engineering Science, Graduate School of Engineering Science, Osaka University, Toyonaka, Osaka 560-8531, Japan
| | - Hiroshi Matsui
- Department
of Materials Engineering Science, Graduate School of Engineering Science, Osaka University, Toyonaka, Osaka 560-8531, Japan
| | - Takanori Nagami
- Department
of Materials Engineering Science, Graduate School of Engineering Science, Osaka University, Toyonaka, Osaka 560-8531, Japan
| | - Shota Takamuku
- Department
of Materials Engineering Science, Graduate School of Engineering Science, Osaka University, Toyonaka, Osaka 560-8531, Japan
| | - Yasutaka Kitagawa
- Department
of Materials Engineering Science, Graduate School of Engineering Science, Osaka University, Toyonaka, Osaka 560-8531, Japan
- Center
for Spintronics Research Network (CSRN), Graduate School of Engineering
Science, Osaka University, Toyonaka, Osaka 560-8531, Japan
| | - Benoît Champagne
- Laboratoire
de Chimie Théorique, University of Namur, rue de Bruxelles,
61, 5000 Namur, Belgium
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7
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Kyriakidou K, Karafiloglou P. Natural bond orbitals: Local sets showing minimal intra-pair correlations and minimal unpaired electron populations. COMPUT THEOR CHEM 2017. [DOI: 10.1016/j.comptc.2016.11.017] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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8
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Rincón L, Mora JR, Torres FJ, Almeida R. On the activation of σ-bonds by electric fields: A Valence Bond perspective. Chem Phys 2016. [DOI: 10.1016/j.chemphys.2016.08.008] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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9
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Ikeda A, Nakao Y, Sato H, Sakaki S. A resonance theory consistent with Mulliken-population concept. Chem Phys Lett 2011. [DOI: 10.1016/j.cplett.2011.02.033] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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10
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Arechederra RL, Artyushkova K, Atanassov P, Minteer SD. Growth of phthalocyanine doped and undoped nanotubes using mild synthesis conditions for development of novel oxygen reduction catalysts. ACS APPLIED MATERIALS & INTERFACES 2010; 2:3295-3302. [PMID: 21043456 DOI: 10.1021/am100724v] [Citation(s) in RCA: 54] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
Precious metal alloys have been the predominant electrocatalyst used for oxygen reduction in fuel cells since the 1960s. Although performance of these catalysts is high, they do have drawbacks. The two main problems with precious metal alloys are catalyst passivation and cost. This is why new novel catalysts are being developed and employed for oxygen reduction. This paper details the low temperature solvothermal synthesis and characterization of carbon nanotubes that have been doped with both iron and cobalt centered phthalocyanine. The synthesis is a novel low-temperature, supercritical solvent synthesis that reduces halocarbons to form a metal chloride byproduct and carbon nanotubes. Perchlorinated phthalocyanine was added to the nanotube synthesis to incorporate the phthalocyanine structure into the graphene sheets of the nanotubes to produce doped nanotubes that have the catalytic oxygen reduction capabilities of the metallo-phthalocyanine and the advantageous material qualities of carbon nanotubes. The cobalt phthalocyanine doped carbon nanotubes showed a half wave oxygen reduction potential of -0.050 ± 0.005 V vs Hg\HgO, in comparison to platinum's half wave oxygen reduction potential of -0.197 ± 0.002 V vs Hg\HgO.
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Affiliation(s)
- Robert L Arechederra
- Department of Chemistry, Saint Louis University, 3501 Laclede Avenue, St. Louis, Missouri 63103, USA
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11
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Investigating sigma bonds in an electric field from the Pauling’s perspective: the behavior of Cl–X and H–X (X = C, Si) bonds. Theor Chem Acc 2009. [DOI: 10.1007/s00214-009-0650-9] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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12
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Ikeda A, Nakao Y, Sato H, Sakaki S. Generalization of the New Resonance Theory: Second Quantization Operator, Localization Scheme, and Basis Set. J Chem Theory Comput 2009; 5:1741-8. [DOI: 10.1021/ct900053r] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Atsushi Ikeda
- Department of Molecular Engineering, Kyoto University, Kyoto 615-8510, Japan
| | - Yoshihide Nakao
- Department of Molecular Engineering, Kyoto University, Kyoto 615-8510, Japan
| | - Hirofumi Sato
- Department of Molecular Engineering, Kyoto University, Kyoto 615-8510, Japan
| | - Shigeyoshi Sakaki
- Department of Molecular Engineering, Kyoto University, Kyoto 615-8510, Japan
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Karafiloglou P. An efficient generalized polyelectron population analysis in orbital spaces: the hole-expansion methodology. J Chem Phys 2009; 130:164103. [PMID: 19405557 DOI: 10.1063/1.3116083] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023] Open
Abstract
We present relations leading to an efficient generalized population analysis in orbital spaces of usual delocalized molecular orbital wave functions. Besides the calculation of the diagonal elements of the reduced density matrices of any order, one can also calculate efficiently the probabilities (or, in general, the weights) of various occupation schemes of local electronic structures, by using generalized density operators referring to both electrons and electron holes. Within this population analysis, correlated molecular orbital wave functions can be used, and there are no restrictions to the number of the analyzed electrons and electron holes. It is based on the hole-expansion methodology, according to which a given electronic population is expanded in terms involving only electron holes, which as shown, can be calculated very efficiently; usual difficulties arising from the necessity to handle extremely large local determinantal basis sets are avoided, without introducing approximations. Although an emphasis is given for populations in the basis of orthogonal orbital spaces (providing probabilities), the case of nonorthogonal ones is also considered in order to show the connection of the generalized populations and the traditional weights obtained from valence-bond wave functions. Physically meaningful populations can be obtained by using natural orbitals, such as the natural atomic orbitals (NAOs) (orthogonal orbitals) or the pre-NAO's (nonorthogonal orbitals); numerical applications for pyrrole molecule are presented in the basis of these natural orbitals.
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Affiliation(s)
- P Karafiloglou
- Department of General and Inorganic Chemistry, Faculty of Chemistry, Aristotle University of Thessaloniki, P.O. Box 135, 54124 Thessaloniki, Greece.
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