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Inducing high exo selectivity in Diels-Alder reaction by dimethylborane substituent: a DFT study. Sci Rep 2022; 12:22225. [PMID: 36564456 PMCID: PMC9789069 DOI: 10.1038/s41598-022-26685-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2022] [Accepted: 12/19/2022] [Indexed: 12/24/2022] Open
Abstract
In this work, the role of Lewis acid-base (LAB) interaction on the stereoselectivity of the Diels-Alder (DA) reaction has been studied by DFT in gas and solution (dichloromethane) phases. The calculations were performed at the B3LYP/6-311G++ (d, p) level. Two different series of DA reactions were investigated: (1)-three mono-substituted cyclopentadienes + dimethyl(vinyl)borane; (2)-five α,β-unsaturated carbonyl compounds + cyclopenta-2,4-dien-1-yldimethylborane. The reacting diene and dienophile pairs were chosen to restrict LAB interaction to the exo reaction pathway. It was found that in some of the examined cases, the favorable LAB interaction is so strong that it can lead to a completely exo-selective DA reaction. Furthermore, a novel multistep synthetic method was hypothesized for preparing exo cycloadduct with near 100% stereoselectivity. Our results can open up new avenues toward the rational design of exo-selective DA reactions for synthesizing novel bioorganic compounds.
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2
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Affiliation(s)
- Nathan A. Romero
- Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599-3290, United States
| | - David A. Nicewicz
- Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599-3290, United States
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3
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Zhang X, Tang M, Wang Y, Ran Y, Wei D, Zhu Y, Zhang W. DFT Study on the Mechanism and Stereoselectivity of NHC-Catalyzed Synthesis of Substituted Trifluoromethyl Dihydropyranones with Contiguous Stereocenters. J Org Chem 2016; 81:868-77. [DOI: 10.1021/acs.joc.5b02439] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Xiaoli Zhang
- The College
of Chemistry
and Molecular Engineering, Zhengzhou University, Zhengzhou, Henan Province 450001, P. R. China
| | - Mingsheng Tang
- The College
of Chemistry
and Molecular Engineering, Zhengzhou University, Zhengzhou, Henan Province 450001, P. R. China
| | - Yang Wang
- The College
of Chemistry
and Molecular Engineering, Zhengzhou University, Zhengzhou, Henan Province 450001, P. R. China
| | - Yingying Ran
- The College
of Chemistry
and Molecular Engineering, Zhengzhou University, Zhengzhou, Henan Province 450001, P. R. China
| | - Donghui Wei
- The College
of Chemistry
and Molecular Engineering, Zhengzhou University, Zhengzhou, Henan Province 450001, P. R. China
| | - Yanyan Zhu
- The College
of Chemistry
and Molecular Engineering, Zhengzhou University, Zhengzhou, Henan Province 450001, P. R. China
| | - Wenjing Zhang
- The College
of Chemistry
and Molecular Engineering, Zhengzhou University, Zhengzhou, Henan Province 450001, P. R. China
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Pérez-Ruiz R, Jiménez MC, Miranda MA. Hetero-cycloreversions mediated by photoinduced electron transfer. Acc Chem Res 2014; 47:1359-68. [PMID: 24702062 DOI: 10.1021/ar4003224] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
Discovered more than eight decades ago, the Diels-Alder (DA) cycloaddition (CA) remains one of the most versatile tools in synthetic organic chemistry. Hetero-DA processes are powerful methods for the synthesis of densely functionalized six-membered heterocycles, ubiquitous substructures found in natural products and bioactive compounds. These reactions frequently employ azadienes and oxadienes, but only a few groups have reported DA processes with thiadienes. The electron transfer (ET) version of the DA reaction, though less investigated, has emerged as a subject of increasing interest. In the last two decades, researchers have paid closer attention to radical ionic hetero-cycloreversions, mainly in connection with their possible involvement in the repair of pyrimidine(6-4)pyrimidone photolesions in DNA by photolyases. In biological systems, these reactions likely occur through a reductive photosensitization mechanism. In addition, photooxidation can lead to cycloreversion (CR) reactions, and researchers can exploit this strategy for DNA repair therapies. In this Account, we discuss electron-transfer (ET) mediated hetero-CR reactions. We focus on the oxidative and reductive ET splitting of oxetanes, azetidines, and thietanes. Photoinduced electron transfer facilitates the splitting of a variety of four-membered heterocycles. In this context, researchers have commonly examined oxetanes, both experimentally and theoretically. Although a few studies have reported the cycloreversion of azetidines and thietanes carried out under electron transfer conditions, the number of examples remains limited. In general, the cleavage of the ionized four-membered rings appears to occur via a nonconcerted two-step mechanism. The trapping of the intermediate 1,4-radical ions and transient absorption spectroscopy data support this hypothesis, and it explains the observed loss of stereochemistry in the products. In the initial step, either C-C or C-X bond breaking may occur, and the preferred route depends on the substitution pattern of the ring, the type of heteroatom, and various experimental conditions. To better accommodate spin and charge, C-X cleavage happens more frequently, especially in the radical anionic version of the reaction. The addition or withdrawal of a single electron provides a new complementary synthetic strategy to activate hetero-cycloreversions. Despite its potential, this strategy remains largely unexplored. However, it offers a useful method to achieve C═X/olefin metathesis or, upon ring expansion, to construct six-membered heterocyclic rings.
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Affiliation(s)
- Raúl Pérez-Ruiz
- Departamento de Química/Instituto
de Tecnología Química (UPV-CSIC), Universitat Politècnica de València, Camino de Vera s/n, 46022, Valencia, Spain
| | - M. Consuelo Jiménez
- Departamento de Química/Instituto
de Tecnología Química (UPV-CSIC), Universitat Politècnica de València, Camino de Vera s/n, 46022, Valencia, Spain
| | - Miguel A. Miranda
- Departamento de Química/Instituto
de Tecnología Química (UPV-CSIC), Universitat Politècnica de València, Camino de Vera s/n, 46022, Valencia, Spain
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Zhang WJ, Wei DH, Tang MS. DFT Investigation on Mechanisms and Stereoselectivities of [2 + 2 + 2] Multimolecular Cycloaddition of Ketenes and Carbon Disulfide Catalyzed by N-Heterocyclic Carbenes. J Org Chem 2013; 78:11849-59. [DOI: 10.1021/jo4018809] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Affiliation(s)
- Wen-Jing Zhang
- The
College of Chemistry and Molecular Engineering, Zhengzhou University, Zhengzhou, Henan Province 450001, People’s Republic of China
| | - Dong-Hui Wei
- The
College of Chemistry and Molecular Engineering, Zhengzhou University, Zhengzhou, Henan Province 450001, People’s Republic of China
| | - Ming-Sheng Tang
- The
College of Chemistry and Molecular Engineering, Zhengzhou University, Zhengzhou, Henan Province 450001, People’s Republic of China
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Zhang W, Zhu Y, Wei D, Li Y, Tang M. Theoretical investigations toward the [4 + 2] cycloaddition of ketenes with N-benzoyldiazenes catalyzed by N-heterocyclic carbenes: mechanism and enantioselectivity. J Org Chem 2012; 77:10729-37. [PMID: 23153290 DOI: 10.1021/jo302044n] [Citation(s) in RCA: 55] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Abstract
Density functional theory (DFT) calculations have been performed to provide the first detailed computational study on the mechanism and enantioselectivity for the [4 + 2] cycloaddition reaction of ketenes with N-benzoyldiazenes catalyzed by N-heterocyclic carbenes (NHCs). Two possible mechanisms have been studied: first is the "ketene-first" mechanism (mechanism A), and second is the novel "diazene-first" mechanism (mechanism B). The calculated results reveal that mechanism B is more favorable than mechanism A because it is not only of lower energy barrier but also more consistent with the provided general experimental procedure (Huang, X.-L.; He, L.; Shao, P.-L.; Ye, S. Angew. Chem., Int. Ed.2009, 48, 192-195). The enantioselectivity-determining step is demonstrated to present during the first process of cycloaddition, and the main product configuration is verified to agree with the experimental ee values very well. This study should be of some worth on forecasting how different substituent groups of catalysts and/or reactants affect the enantioselectivity of products. The obtained novel mechanistic insights should be valuable for not only rational design of more efficient NHC catalysts but also understanding the general reaction mechanism of [4 + 2] cycloaddition of ketenes.
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Affiliation(s)
- Wenjing Zhang
- The College of Chemistry and Molecular Engineering, Zhengzhou University, Zhengzhou, Henan Province 450001, P. R. China
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Couturier-Tamburelli I, Sessouma B, Chiavassa T, Piétri N. Zwitterion formation in titan ice analogs: reaction between HC3N and NH3. J Phys Chem A 2012; 116:10721-7. [PMID: 23075265 DOI: 10.1021/jp305517k] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Abstract
A zwitterion is formed in the laboratory at low temperatures in the solid phase from the thermal reaction of HC(3)N and NH(3). We report for the first time its infrared spectrum. We study its reaction using Fourier transform infrared spectroscopy. Its reaction rate is estimated to be k(T) = 2.9 × 10(5) exp(-2.3 ± 0.1 (kJ mol(-1))/RT). Calculations using density functional theory (B3LYP/6-31g**) are used to characterize all the species (complexes, zwitterions, and transition states) and are in good agreement with the infrared spectra. The structure of the zwitterion is determined planar and it is characterized by a N-C bond around 1.5 Å.
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Affiliation(s)
- Isabelle Couturier-Tamburelli
- UMR CNRS 7345, Physique des Interactions Ioniques et Moléculaires, Equipe de Spectrométries et Dynamique Moléculaires, Aix Marseille Université, Case 252, Centre de St-Jérôme, 13397 Marseille cedex 20, France.
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Zhang W, Zhu Y, Wei D, Tang M. Mechanisms of the cascade synthesis of substituted 4-amino-1,2,4-triazol-3-one from huisgen zwitterion and aldehyde hydrazone: A DFT study. J Comput Chem 2012; 33:715-22. [DOI: 10.1002/jcc.22906] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2011] [Accepted: 11/14/2011] [Indexed: 01/04/2023]
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Pérez-Ruiz R, Domingo LR, Jiménez MC, Miranda MA. Experimental and Theoretical Studies on the Radical-Cation-Mediated Imino-Diels–Alder Reaction. Org Lett 2011; 13:5116-9. [DOI: 10.1021/ol201984s] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Raul Pérez-Ruiz
- Departamento de Química-Instituto de Tecnología Química UPV-CSIC, Universidad Politécnica de Valencia, Camino de Vera s/n, 46022, Valencia, Spain, and Departamento de Química Orgánica, Universidad de Valencia, Dr. Moliner 50, E-46100 Burjassot, Valencia, Spain
| | - Luis R. Domingo
- Departamento de Química-Instituto de Tecnología Química UPV-CSIC, Universidad Politécnica de Valencia, Camino de Vera s/n, 46022, Valencia, Spain, and Departamento de Química Orgánica, Universidad de Valencia, Dr. Moliner 50, E-46100 Burjassot, Valencia, Spain
| | - M. Consuelo Jiménez
- Departamento de Química-Instituto de Tecnología Química UPV-CSIC, Universidad Politécnica de Valencia, Camino de Vera s/n, 46022, Valencia, Spain, and Departamento de Química Orgánica, Universidad de Valencia, Dr. Moliner 50, E-46100 Burjassot, Valencia, Spain
| | - Miguel A. Miranda
- Departamento de Química-Instituto de Tecnología Química UPV-CSIC, Universidad Politécnica de Valencia, Camino de Vera s/n, 46022, Valencia, Spain, and Departamento de Química Orgánica, Universidad de Valencia, Dr. Moliner 50, E-46100 Burjassot, Valencia, Spain
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Wei D, Zhu Y, Zhang C, Sun D, Zhang W, Tang M. A DFT study on enantioselective synthesis of aza-β-lactams via NHC-catalyzed [2+2] cycloaddition of ketenes with diazenedicarboxylates. ACTA ACUST UNITED AC 2011. [DOI: 10.1016/j.molcata.2010.11.004] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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11
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Elias Argüello J, Pérez-Ruiz R, Miranda MA. Photoinduced Electron-Transfer Cycloreversion of Thietanes: The Role of Ion−Molecule Complexes. Org Lett 2010; 12:1884-7. [DOI: 10.1021/ol100520m] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Juan Elias Argüello
- INFIQC, Departamento de Química Orgánica, Facultad de Ciencias Químicas, Universidad Nacional de Córdoba, Ciudad Universitaria, 5000 Córdoba, Argentina, and Departamento de Química, Instituto de Tecnología Química UPV-CSIC, Universidad Politécnica de Valencia, Camino de Vera s/n, 46022 Valencia, Spain
| | - Raúl Pérez-Ruiz
- INFIQC, Departamento de Química Orgánica, Facultad de Ciencias Químicas, Universidad Nacional de Córdoba, Ciudad Universitaria, 5000 Córdoba, Argentina, and Departamento de Química, Instituto de Tecnología Química UPV-CSIC, Universidad Politécnica de Valencia, Camino de Vera s/n, 46022 Valencia, Spain
| | - Miguel A. Miranda
- INFIQC, Departamento de Química Orgánica, Facultad de Ciencias Químicas, Universidad Nacional de Córdoba, Ciudad Universitaria, 5000 Córdoba, Argentina, and Departamento de Química, Instituto de Tecnología Química UPV-CSIC, Universidad Politécnica de Valencia, Camino de Vera s/n, 46022 Valencia, Spain
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12
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Zhang C, Zhu Y, Wei D, Sun D, Zhang W, Tang M. Theoretical Study on the Reaction Mechanism between 6-Benzyl-6-azabicyclo[2.2.1]hept-2-ene and Benzoyl Isocyanate to Urea and Isourea. J Phys Chem A 2010; 114:2913-9. [DOI: 10.1021/jp910173d] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Cong Zhang
- Center of Computational Chemistry, Department of Chemistry, Zhengzhou University, Zhengzhou, Henan Province, 450052, P. R. China
| | - Yanyan Zhu
- Center of Computational Chemistry, Department of Chemistry, Zhengzhou University, Zhengzhou, Henan Province, 450052, P. R. China
| | - Donghui Wei
- Center of Computational Chemistry, Department of Chemistry, Zhengzhou University, Zhengzhou, Henan Province, 450052, P. R. China
| | - Dongzhen Sun
- Center of Computational Chemistry, Department of Chemistry, Zhengzhou University, Zhengzhou, Henan Province, 450052, P. R. China
| | - Wenjing Zhang
- Center of Computational Chemistry, Department of Chemistry, Zhengzhou University, Zhengzhou, Henan Province, 450052, P. R. China
| | - Mingsheng Tang
- Center of Computational Chemistry, Department of Chemistry, Zhengzhou University, Zhengzhou, Henan Province, 450052, P. R. China
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