1
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Owens A. A highly accurate potential energy surface for carbonyl sulphide (OCS): how important are the ab initio calculations? Phys Chem Chem Phys 2024; 26:17684-17694. [PMID: 38869020 DOI: 10.1039/d4cp01205d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/14/2024]
Abstract
Ab initio quantum chemical methods can produce accurate molecular potential energy surfaces (PESs) capable of predicting the fundamental vibrational wavenumbers to within 1 cm-1. However, for high-resolution applications this is simply not good enough and empirical refinement is necessary, i.e. adjusting the PES to better match laboratory spectroscopic data. Here, the impact of the underlying ab initio calculations is rigorously investigated within the context of empirical refinement. For carbonyl sulphide (OCS), state-of-the-art electronic structure calculations are employed to construct higher- and lower-level ab initio PESs, which are then empirically refined in near-identical procedures. The initial ab initio calculations are shown to considerably affect the accuracy of the final refined PES, with an order-of-magnitude improvement in computed rotation-vibration energy levels achieved for OCS. In demonstrating this, the most accurate PES of the electronic ground state of OCS is produced, reproducing the fundamentals with a root-mean-square error (RMSE) of 0.004 cm-1, and 884 rovibrational energy levels below 14 000 cm-1 with an RMSE of 0.060 cm-1.
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Affiliation(s)
- Alec Owens
- Department of Physics and Astronomy, University College London, Gower Street, WC1E 6BT, London, UK.
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2
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Li X, Qin Z, Liu L. High-temperature rotation-vibration spectrum of iminosilylene (HNSi). Phys Chem Chem Phys 2024; 26:15569-15575. [PMID: 38757604 DOI: 10.1039/d4cp01046a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/18/2024]
Abstract
Iminosilylene (HNSi) has been observed in the laboratory and is expected to occur in the envelopes of carbon-rich stars. However, the lack of spectroscopic information for HNSi has hampered its further astrophysical detection. Using robust ab initio methods, we present the first and comprehensive molecular line list for HNSi (X 1Σ+). The new line list contains almost 3.36 billion transitions between 1.57 million levels with rotational excitation up to J = 160. It is suitable for temperatures up to 3000 K and covers the wavenumber range of 0-9000 cm-1 (wavelengths λ > 1.11 μm). This new line list can be helpful for the future spectroscopic characterization and molecular detection of HNSi in the laboratory and interstellar space.
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Affiliation(s)
- Ximing Li
- School of Energy and Power Engineering, Shandong University, Jinan 250061, China.
| | - Zhi Qin
- School of Energy and Power Engineering, Shandong University, Jinan 250061, China.
| | - Linhua Liu
- School of Energy and Power Engineering, Shandong University, Jinan 250061, China.
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3
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Li X, Qin Z, Liu L. High-temperature molecular line list of hydroboron monoxide (HBO). Phys Chem Chem Phys 2024; 26:12838-12843. [PMID: 38623625 DOI: 10.1039/d3cp05997a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/17/2024]
Abstract
Hydroboron monoxide (HBO) is expected to occur in envelopes of the asymptotic giant branch (AGB), but a lack of spectroscopic data is hampering its possible detection. Using the state-of-the-art ab initio method, we present the first, comprehensive molecular line list for HBO which is suitable for temperatures up to T = 3000 K. This new line list covers the wavenumber range of 0-9000 cm-1 (wavelengths of λ ≥ 1.11 μm), and it contains almost 75 million transitions between 435 631 energy levels with rotational excitation up to J = 120. The new line list of HBO can facilitate its future molecular detection in the laboratory and interstellar space.
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Affiliation(s)
- Ximing Li
- School of Energy and Power Engineering, Shandong University, 27 Shanda Nanlu, Jinan, 250061, PR China.
| | - Zhi Qin
- School of Energy and Power Engineering, Shandong University, 27 Shanda Nanlu, Jinan, 250061, PR China.
| | - Linhua Liu
- School of Energy and Power Engineering, Shandong University, 27 Shanda Nanlu, Jinan, 250061, PR China.
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4
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Martín Santa Daría A, Avila G, Mátyus E. Methane dimer rovibrational states and Raman transition moments. Phys Chem Chem Phys 2024; 26:10254-10264. [PMID: 38497527 DOI: 10.1039/d3cp06222h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/19/2024]
Abstract
Benchmark-quality rovibrational data are reported for the methane dimer from variational nuclear motion computations using an ab initio intermolecular potential energy surface reported by [M. P. Metz et al., Phys. Chem. Chem. Phys., 2019, 21, 13504-13525]. A simple polarizability model is used to compute Raman transition moments that may be relevant for future direct observation of the intermolecular dynamics. Non-negligible ΔK ≠ 0 transition moments arise in this symmetric top system due to strong rovibrational couplings.
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Affiliation(s)
- Alberto Martín Santa Daría
- Departamento de Química Física, University of Salamanca, 37008 Salamanca, Spain
- ELTE, Eötvös Loránd University, Institute of Chemistry, Pázmány Péter sétány 1/A, 1117 Budapest, Hungary.
| | - Gustavo Avila
- ELTE, Eötvös Loránd University, Institute of Chemistry, Pázmány Péter sétány 1/A, 1117 Budapest, Hungary.
| | - Edit Mátyus
- ELTE, Eötvös Loránd University, Institute of Chemistry, Pázmány Péter sétány 1/A, 1117 Budapest, Hungary.
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5
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Mellor TM. Molecular frames for a symmetry-adapted rotational basis set. Mol Phys 2022. [DOI: 10.1080/00268976.2022.2118638] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
Affiliation(s)
- Thomas M. Mellor
- Department of Physics and Astronomy, University College London, London, UK
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6
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Huang X, Schwenke DW, Freedman RS, Lee TJ. Ames-2021 CO 2 Dipole Moment Surface and IR Line Lists: Toward 0.1% Uncertainty for CO 2 IR Intensities. J Phys Chem A 2022; 126:5940-5964. [PMID: 36007245 DOI: 10.1021/acs.jpca.2c01291] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
A highly accurate CO2 ab initio dipole moment surface (DMS), Ames-2021, is reported along with 12C16O2 infrared (IR) intensity comparisons approaching a 1-4‰ level of agreement and uncertainty. The Ames-2021 DMS was accurately fitted from CCSD(T) finite-field dipoles computed with the aug-cc-pVXZ (X = T, Q, 5) basis for C atom and the d-aug-cc-pVXZ (X = T, Q, 5) basis for O atoms, and extrapolated to the one particle basis set limit. Fitting σrms is 3.8 × 10-7 au for 4443 geometries below 15 000 cm-1. The corresponding IR intensity, SAmes-2021, are computed using the Ames-2 potential energy surface (PES), which is the best PES available for CO2. Compared to high accuracy IR studies for 2001i-00001 and 3001i-00001 bands, SAmes-2021 matches NIST experiment-based intensities [SNIST-HIT16 or SHIT20] to -1.0 ± 1.3‰, or matches DLR experiment-based intensities [SDLR-HIT16/UCL/Ames] to 1.9 ± 3.7‰. This indicates the systematic deviations and uncertainties have been significantly reduced in SAmes-2021. The SUCL2015 (or SHITRAN2016) have larger deviations (vs SDLR) and uncertainties (vs SDLR, SNIST) which are attributed to the less accurate Ames-1 PES adopted in UCL-296 line list calculation. The SAmes-2021 intensity of 12C16O2 and 13C16O2 is utilized to derive new absolute 13C/12C ratios for Vienna PeeDee Belemnite (VPDB) with uncertainty reduced by 1/3 or 2/3. Further evaluation of SAmes-2021 intensities are carried out on those CO2 bands discussed in the HITRAN2020 update paper. Consistent improvements and better accuracies are found in band-by-band analysis, except for those bands strongly affected by Coriolis couplings, or very weak bands measured with relatively larger experimental uncertainties. The Ames-2021 296 K IR line lists are generated for 13 CO2 isotopologues, with 18 000 cm-1 and S296 K > 1 × 10-31 cm/molecule cutoff and then combined with CDSD line positions (except 14C16O2). The Ames-2021 DMS and 296 K IR line lists represent a major improvement over previous CO2 theoretical IR intensity studies, including Ames-2016, UCL-296, and recent UCL DMS 2021 update. A real 1 permille level of agreement and uncertainty will definitely require both more accurate PES and more accurate DMS.
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Affiliation(s)
- Xinchuan Huang
- MS 245-6, Astrophysics Branch, Space Science and Astrobiology Division, NASA Ames Research Center, Moffett Field, California 94035, United States.,SETI Institute, 339 Bernardo Avenue, Suite 200, Mountain View, California 94043, United States
| | - David W Schwenke
- MS 258-2, NAS Facility, NASA Ames Research Center, Moffett Field, California 94035, United States
| | - Richard S Freedman
- SETI Institute, 339 Bernardo Avenue, Suite 200, Mountain View, California 94043, United States.,MS 245-3, Planetary Systems Branch, Space Science and Astrobiology Division, NASA Ames Research Center, Moffett Field, California 94035, United States
| | - Timothy J Lee
- MS 245-3, Planetary Systems Branch, Space Science and Astrobiology Division, NASA Ames Research Center, Moffett Field, California 94035, United States
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7
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Tyuterev V, Tashkun S, Rey M, Nikitin A. High-order contact transformations of molecular Hamiltonians: general approach, fast computational algorithm and convergence of ro-vibrational polyad models. Mol Phys 2022. [DOI: 10.1080/00268976.2022.2096140] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/16/2022]
Affiliation(s)
- Vladimir Tyuterev
- Groupe de Spectrométrie Moléculaire et Atmosphérique, Université de Reims, Reims, France
- Laboratory of Molecular Quantum Mechanics and Radiative Transfer, Tomsk State University, Tomsk, Russia
| | - Sergey Tashkun
- Laboratory of Theoretical Spectroscopy, V.E. Zuev Institute of Atmospheric Optics, Siberian Branch, Russian Academy of Sciences, Tomsk, Russia
| | - Michael Rey
- Groupe de Spectrométrie Moléculaire et Atmosphérique, Université de Reims, Reims, France
| | - Andrei Nikitin
- Laboratory of Theoretical Spectroscopy, V.E. Zuev Institute of Atmospheric Optics, Siberian Branch, Russian Academy of Sciences, Tomsk, Russia
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8
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Fletcher T, Zhu A, Lawrence JE, Manolopoulos DE. Fast quasi-centroid molecular dynamics. J Chem Phys 2021; 155:231101. [PMID: 34937347 DOI: 10.1063/5.0076704] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We describe a fast implementation of the quasi-centroid molecular dynamics (QCMD) method in which the quasi-centroid potential of mean force is approximated as a separable correction to the classical interaction potential. This correction is obtained by first calculating quasi-centroid radial and angular distribution functions in a short path integral molecular dynamics simulation and then using iterative Boltzmann inversion to obtain an effective classical potential that reproduces these distribution functions in a classical NVT simulation. We illustrate this approach with example applications to the vibrational spectra of gas phase molecules, obtaining excellent agreement with QCMD reference calculations for water and ammonia and good agreement with the quantum mechanical vibrational spectrum of methane.
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Affiliation(s)
- Theo Fletcher
- Physical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, South Parks Road, Oxford OX1 3QZ, United Kingdom
| | - Andrew Zhu
- Physical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, South Parks Road, Oxford OX1 3QZ, United Kingdom
| | - Joseph E Lawrence
- Laboratory of Physical Chemistry, ETH Zürich, 8093 Zürich, Switzerland
| | - David E Manolopoulos
- Physical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, South Parks Road, Oxford OX1 3QZ, United Kingdom
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9
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Haggard C, Sadhasivam VG, Trenins G, Althorpe SC. Testing the quasicentroid molecular dynamics method on gas-phase ammonia. J Chem Phys 2021; 155:174120. [PMID: 34742190 DOI: 10.1063/5.0068250] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Quasicentroid molecular dynamics (QCMD) is a path-integral method for approximating nuclear quantum effects in dynamics simulations, which has given promising results for gas- and condensed-phase water. In this work, by simulating the infrared spectrum of gas-phase ammonia, we test the feasibility of extending QCMD beyond water. Overall, QCMD works as well for ammonia as for water, reducing or eliminating blue shifts from the classical spectrum without introducing the artificial red shifts or broadening associated with other imaginary-time path-integral methods. However, QCMD gives only a modest improvement over the classical spectrum for the position of the symmetric bend mode, which is highly anharmonic (since it correlates with the inversion pathway). We expect QCMD to have similar problems with large-amplitude degrees of freedom in other molecules but otherwise to work as well as for water.
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Affiliation(s)
- Christopher Haggard
- Yusuf Hamied Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, United Kingdom
| | - Vijay Ganesh Sadhasivam
- Yusuf Hamied Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, United Kingdom
| | - George Trenins
- Laboratory of Physical Chemistry, ETH Zürich, 8093 Zürich, Switzerland
| | - Stuart C Althorpe
- Yusuf Hamied Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, United Kingdom
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10
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Yang C, Ezendeeva D, Yu T, Magnotti G. Temperature dependent Raman spectra of ammonia ranging from 3150 cm -1 to 3810 cm -1 for combustion applications. OPTICS EXPRESS 2021; 29:33234-33244. [PMID: 34809139 DOI: 10.1364/oe.437979] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/16/2021] [Accepted: 09/12/2021] [Indexed: 06/13/2023]
Abstract
Applying in combustion research, Raman scattering technique can provide high accuracy and high precision measurements of temperature and major species concentrations. However detailed knowledge of the temperature dependent Raman spectra of the probed species is a precondition to realise the potential of high precision and accuracy of the technique. As a carbon free novel fuel, the knowledge of high temperature Raman spectra of ammonia is rarely reported. We measured the Raman spectra of ammonia ranging from 299 K to 760 K. The high resolution Raman spectra are excited with a continuous wave 532 nm laser and detected with an low aberration Schmidt-Czerny-Turner spectrometer. The temperature of probe volume was determined by the fitting of N2 Raman spectra. The Raman spectra of ammonia under different temperatures were quantitatively normalized to the same number density to research the temperature behavior of spectra. Within the Raman shift region from 3150 cm-1 to 3810 cm-1, the Raman intensity and the polarization anisotropy of vibrational modes ν1, ν3, and 2ν4 were reported. The relative intensity between ν1, ν3, and 2ν4 modes were also analyzed under different temperatures.
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11
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Benson RL, Althorpe SC. On the "Matsubara heating" of overtone intensities and Fermi splittings. J Chem Phys 2021; 155:104107. [PMID: 34525826 DOI: 10.1063/5.0056829] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022] Open
Abstract
Classical molecular dynamics (MD) and imaginary-time path-integral dynamics methods underestimate the infrared absorption intensities of overtone and combination bands by typically an order of magnitude. Plé et al. [J. Chem. Phys. 155, 2863 (2021)] have shown that this is because such methods fail to describe the coupling of the centroid to the Matsubara dynamics of the fluctuation modes; classical first-order perturbation theory (PT) applied to the Matsubara dynamics is sufficient to recover most of the lost intensity in simple models and gives identical results to quantum (Rayleigh-Schrödinger) PT. Here, we show numerically that the results of this analysis can be used as post-processing correction factors, which can be applied to realistic (classical MD or path-integral dynamics) simulations of infrared spectra. We find that the correction factors recover most of the lost intensity in the overtone and combination bands of gas-phase water and ammonia and much of it for liquid water. We then re-derive and confirm the earlier PT analysis by applying canonical PT to Matsubara dynamics, which has the advantage of avoiding secular terms and gives a simple picture of the perturbed Matsubara dynamics in terms of action-angle variables. Collectively, these variables "Matsubara heat" the amplitudes of the overtone and combination vibrations of the centroid to what they would be in a classical system with the oscillators (of frequency Ωi) held at their quantum effective temperatures [of ℏΩi coth(βℏΩi/2)/2kB]. Numerical calculations show that a similar neglect of "Matsubara heating" causes path-integral methods to underestimate Fermi resonance splittings.
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Affiliation(s)
- Raz L Benson
- Yusuf Hamied Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, United Kingdom
| | - Stuart C Althorpe
- Yusuf Hamied Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, United Kingdom
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12
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Owens A, Clark VHJ, Mitrushchenkov A, Yurchenko SN, Tennyson J. Theoretical rovibronic spectroscopy of the calcium monohydroxide radical (CaOH). J Chem Phys 2021; 154:234302. [PMID: 34241268 DOI: 10.1063/5.0052958] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023] Open
Abstract
The rovibronic (rotation-vibration-electronic) spectrum of the calcium monohydroxide radical (CaOH) is of interest to studies of exoplanet atmospheres and ultracold molecules. Here, we theoretically investigate the Ã2Π-X̃2Σ+ band system of CaOH using high-level ab initio theory and variational nuclear motion calculations. New potential energy surfaces (PESs) are constructed for the X̃2Σ+ and Ã2Π electronic states along with Ã-X̃ transition dipole moment surfaces (DMSs). For the ground X̃2Σ+ state, a published high-level ab initio PES is empirically refined to all available experimental rovibrational energy levels up to J = 15.5, reproducing the observed term values with a root-mean-square error of 0.06 cm-1. Large-scale multireference configuration interaction calculations using quintuple-zeta quality basis sets are employed to generate the Ã2Π state PESs and Ã-X̃ DMSs. Variational calculations consider both Renner-Teller and spin-orbit coupling effects, which are essential for a correct description of the spectrum of CaOH. Computed rovibronic energy levels of the Ã2Π state, line list calculations up to J = 125.5, and an analysis of Renner-Teller splittings in the ν2 bending mode of CaOH are discussed.
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Affiliation(s)
- Alec Owens
- Department of Physics and Astronomy, University College London, Gower Street, WC1E 6BT London, United Kingdom
| | - Victoria H J Clark
- Department of Physics and Astronomy, University College London, Gower Street, WC1E 6BT London, United Kingdom
| | - Alexander Mitrushchenkov
- MSME, Univ Gustave Eiffel, CNRS UMR 8208, Univ Paris Est Creteil, F-77474 Marne-la- Vallée, France
| | - Sergei N Yurchenko
- Department of Physics and Astronomy, University College London, Gower Street, WC1E 6BT London, United Kingdom
| | - Jonathan Tennyson
- Department of Physics and Astronomy, University College London, Gower Street, WC1E 6BT London, United Kingdom
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13
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Martín Santa Daría A, Avila G, Mátyus E. Performance of a black-box-type rovibrational method in comparison with a tailor-made approach: Case study for the methane-water dimer. J Chem Phys 2021; 154:224302. [PMID: 34241197 DOI: 10.1063/5.0054512] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The present work intends to join and respond to the excellent and thoroughly documented rovibrational study of X. G. Wang and T. Carrington, Jr. [J. Chem. Phys. 154, 124112 (2021)] that used an approach tailored for floppy dimers with an analytic dimer Hamiltonian and a non-product basis set including Wigner D functions. It is shown in the present work that the GENIUSH black-box-type rovibrational method can approach the performance of the tailor-made computation for the example of the floppy methane-water dimer. Rovibrational transition energies and intensities are obtained in the black-box-type computation with a twice as large basis set and in excellent numerical agreement in comparison with the more efficient tailor-made approach.
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Affiliation(s)
| | - Gustavo Avila
- Institute of Chemistry, ELTE Eötvös Loránd University, Pázmány Péter sétány 1/A, 1117 Budapest, Hungary
| | - Edit Mátyus
- Institute of Chemistry, ELTE Eötvös Loránd University, Pázmány Péter sétány 1/A, 1117 Budapest, Hungary
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14
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Nguyen HVL, Gulaczyk I, Kręglewski M, Kleiner I. Large amplitude inversion tunneling motion in ammonia, methylamine, hydrazine, and secondary amines: From structure determination to coordination chemistry. Coord Chem Rev 2021. [DOI: 10.1016/j.ccr.2021.213797] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
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15
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Abstract
Linear molecules usually represent a special case in rotational-vibrational calculations due to a singularity of the kinetic energy operator that arises from the rotation about the a (the principal axis of least moment of inertia, becoming the molecular axis at the linear equilibrium geometry) being undefined. Assuming the standard ro-vibrational basis functions, in the 3N−6 approach, of the form ∣ν1,ν2,ν3ℓ3;J,k,m⟩, tackling the unique difficulties of linear molecules involves constraining the vibrational and rotational functions with k=ℓ3, which are the projections, in units of ℏ, of the corresponding angular momenta onto the molecular axis. These basis functions are assigned to irreducible representations (irreps) of the C2v(M) molecular symmetry group. This, in turn, necessitates purpose-built codes that specifically deal with linear molecules. In the present work, we describe an alternative scheme and introduce an (artificial) group that ensures that the condition ℓ3=k is automatically applied solely through symmetry group algebra. The advantage of such an approach is that the application of symmetry group algebra in ro-vibrational calculations is ubiquitous, and so this method can be used to enable ro-vibrational calculations of linear molecules in polyatomic codes with fairly minimal modifications. To this end, we construct a—formally infinite—artificial molecular symmetry group D∞h(AEM), which consists of one-dimensional (non-degenerate) irreducible representations and use it to classify vibrational and rotational basis functions according to ℓ and k. This extension to non-rigorous, artificial symmetry groups is based on cyclic groups of prime-order. Opposite to the usual scenario, where the form of symmetry adapted basis sets is dictated by the symmetry group the molecule belongs to, here the symmetry group D∞h(AEM) is built to satisfy properties for the convenience of the basis set construction and matrix elements calculations. We believe that the idea of purpose-built artificial symmetry groups can be useful in other applications.
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16
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Huang X, Schwenke DW, Lee TJ. What It Takes to Compute Highly Accurate Rovibrational Line Lists for Use in Astrochemistry. Acc Chem Res 2021; 54:1311-1321. [PMID: 33621060 DOI: 10.1021/acs.accounts.0c00624] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
ConspectusWe review the Best Theory + Reliable High-Resolution Experiment (BTRHE) strategy for obtaining highly accurate molecular rovibrational line lists with InfraRed (IR) intensities. The need for highly accurate molecular rovibrational line lists is twofold: (a) assignment of the many rovibrational lines for common stable molecules especially those that exhibit a large amplitude motion, such as NH3, or have a high density of states such as SO2; and (b) characterization of the atmospheres of exoplanets, which will be one of the main areas of research in astronomy in the coming decades. The first motivation arises due to the need to eliminate lines due to common molecules in an astronomical observation in order to identify lines from new molecules, while the second motivation arises due to the need to obtain accurate molecular opacities in order to characterize the atmosphere of an exoplanet. The BTRHE strategy first consists of using high-quality ab initio quantum-chemical methods to obtain a global potential energy surface (PES) and dipole moment surface (DMS) that contains the proper physics. The global PES is then refined using a subset of the reliable high-resolution experimental data. The refined PES then gives energy-level predictions to an accuracy similar to the reproduction accuracy of the experimental data used in the refinement step in the interpolation region (i.e., within the range of the experimental data used in the refinement step). The accuracy of the energy levels will slowly degrade as they are extrapolated to spectral regions beyond the high-resolution experimental data used in the refinement step. However, because the degradation is slow, the predicted energy levels can be used to assign new high-resolution experiments, and the data from these can then be used in a subsequent refinement step. In this way, the global PES eventually can yield highly accurate energy levels for all desired spectral regions including to very high energies and high J values. We show that IR intensities computed with the BTRHE rovibrational wave functions and the DMS can be very accurate provided one has minimized the fitting error of the DMS and tested the completeness of the DMS. Some examples of our work on NH3, CO2, and SO2 are given to highlight the usefulness of the BTRHE strategy and to provide ideas on how to further improve its predictive power in the future. In particular, it is shown how successive refinement steps, once new high-resolution data are available, can lead to PESs that yield highly accurate transition energies to larger spectral regions. The importance of including nonadiabatic corrections to reduce the J-dependence of errors for H-containing molecules is shown with work on NH3. Another very important aspect of the BTRHE approach is the consistency across isotopologues, which allows for highly accurate line lists for any isotopologue once one is obtained for the main isotopologue (which has more high-resolution data available for refinement).
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Affiliation(s)
- Xinchuan Huang
- SETI Institute, 189 Bernardo Avenue, Suite 200, Mountain View, California 94043, United States
- MS 245-6, Astrophysics Branch, Space Science and Astrobiology Division, NASA Ames Research Center, Moffett Field, California 94035, United States
| | - David W. Schwenke
- MS 258-2, NAS Facility, NASA Ames Research Center, Moffett Field, California 94035, United States
| | - Timothy J. Lee
- MS245-3, Planetary Systems Branch, Space Science and Astrobiology Division, NASA Ames Research Center, Moffett Field, California 94035, United States
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17
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Viglaska D, Rey M, Nikitin AV, Tyuterev VG. Derivation of ρ-dependent coordinate transformations for nonrigid molecules in the Hougen-Bunker-Johns formalism. J Chem Phys 2020; 153:084102. [PMID: 32872870 DOI: 10.1063/5.0016365] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
In this paper, we report a series of transformations for the construction of a Hamiltonian model for nonrigid polyatomic molecules in the framework of the Hougen-Bunker-Johns formalism (HBJ). This model is expressed in normal mode coordinates for small vibrations and in a specific coordinate ρ to describe the large amplitude motion. For the first time, a general procedure linking the "true" curvilinear coordinates to ρ is proposed, allowing the expression of the potential energy part in the same coordinate representation as the kinetic energy operator, whatever the number of atoms. A Lie group-based method is also proposed for the derivation of the reference configuration in the internal axis system. This work opens new perspectives for future high-resolution spectroscopy studies of nonrigid, medium-sized molecules using HBJ-type Hamiltonians. Illustrative examples and computation of vibrational energy levels on semirigid and nonrigid molecules are given to validate this method.
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Affiliation(s)
- Dominika Viglaska
- Chemistry Department, Queen's University, Kingston, Ontario K7L 3N6, Canada
| | - Michael Rey
- Groupe de Spectrométrie Moléculaire et Atmosphérique, UMR CNRS 7331, BP 1039, F-51687 Reims Cedex 2, France
| | - Andrei V Nikitin
- Laboratory of Theoretical Spectroscopy, Institute of Atmospheric Optics, SB RAS, 634055 Tomsk, Russia
| | - Vladimir G Tyuterev
- Groupe de Spectrométrie Moléculaire et Atmosphérique, UMR CNRS 7331, BP 1039, F-51687 Reims Cedex 2, France
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18
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Nikitin AV, Rey M, Chizhmakova IS, Tyuterev VG. First Full-Dimensional Potential Energy and Dipole Moment Surfaces of SF6. J Phys Chem A 2020; 124:7014-7023. [DOI: 10.1021/acs.jpca.0c02733] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Andrei V. Nikitin
- V.E. Zuev Institute of Atmospheric Optics, Russian Academy of Sciences, 1, Akademichesky Avenue, 634055 Tomsk, Russian Federation
| | - Michael Rey
- Groupe de Spectrométrie Moléculaire et Atmosphérique, UMR CNRS 6089, Université de Reims, U.F.R. Sciences, B.P. 1039, 51687 Reims Cedex 2, France
| | - Iana S. Chizhmakova
- Institute of Monitoring of Climatic and Ecological Systems, Russian Academy of Sciences, 10/3, Academichesky Avenue, 634055 Tomsk, Russian Federation
- QUAMER Laboratory, Tomsk State University, 36 Lenin Avenue, 634050 Tomsk, Russian Federation
| | - Vladimir G. Tyuterev
- Groupe de Spectrométrie Moléculaire et Atmosphérique, UMR CNRS 6089, Université de Reims, U.F.R. Sciences, B.P. 1039, 51687 Reims Cedex 2, France
- QUAMER Laboratory, Tomsk State University, 36 Lenin Avenue, 634050 Tomsk, Russian Federation
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19
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Dalby FR, Fuchs A, Feilberg A. Methanogenic pathways and δ 13 C values from swine manure with a cavity ring-down spectrometer: Ammonia cross-interference and carbon isotope labeling. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2020; 34:e8628. [PMID: 31658498 DOI: 10.1002/rcm.8628] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/09/2019] [Revised: 10/05/2019] [Accepted: 10/05/2019] [Indexed: 06/10/2023]
Affiliation(s)
- Frederik R Dalby
- Department of Engineering, Air Quality Engineering, Aarhus University, Finlandsgade 10, 8200, Aarhus N, Denmark
| | - Andrea Fuchs
- Department of Engineering, Air Quality Engineering, Aarhus University, Finlandsgade 10, 8200, Aarhus N, Denmark
| | - Anders Feilberg
- Department of Engineering, Air Quality Engineering, Aarhus University, Finlandsgade 10, 8200, Aarhus N, Denmark
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20
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Vogt E, Bertran Valls P, Kjaergaard HG. Accurate Calculations of OH-Stretching Intensities with a Reduced-Dimensional Local Mode Model Including Eckart Axis Embedding. J Phys Chem A 2020; 124:932-942. [DOI: 10.1021/acs.jpca.9b10682] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Emil Vogt
- Department of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen Ø Copenhagen, Denmark
| | - Pablo Bertran Valls
- Department of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen Ø Copenhagen, Denmark
| | - Henrik G. Kjaergaard
- Department of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen Ø Copenhagen, Denmark
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21
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Transformation Properties under the Operations of
the Molecular Symmetry Groups G36 and G36(EM) of
Ethane H3CCH3. Symmetry (Basel) 2019. [DOI: 10.3390/sym11070862] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
Abstract
In the present work, we report a detailed description of the symmetry propertiesof the eight-atomic molecule ethane, with the aim of facilitating the variational calculations ofrotation-vibration spectra of ethane and related molecules. Ethane consists of two methyl groupsCH3 where the internal rotation (torsion) of one CH3 group relative to the other is of large amplitudeand involves tunnelling between multiple minima of the potential energy function. The molecularsymmetry group of ethane is the 36-element group G36, but the construction of symmetrised basisfunctions is most conveniently done in terms of the 72-element extended molecular symmetrygroup G36(EM). This group can subsequently be used in the construction of block-diagonal matrixrepresentations of the ro-vibrational Hamiltonian for ethane. The derived transformation matricesassociated with G36(EM) have been implemented in the variational nuclear motion program TROVE(Theoretical ROVibrational Energies). TROVE variational calculations are used as a practical exampleof a G36(EM) symmetry adaptation for large systems with a non-rigid, torsional degree of freedom.We present the derivation of irreducible transformation matrices for all 36 (72) operations of G36(M)(G36(EM)) and also describe algorithms for a numerical construction of these matrices based on aset of four (five) generators. The methodology presented is illustrated on the construction of thesymmetry-adapted representations both of the potential energy function of ethane and of the rotation,torsion and vibration basis set functions.
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22
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Adam AY, Yachmenev A, Yurchenko SN, Jensen P. Variationally Computed IR Line List for the Methyl Radical CH 3. J Phys Chem A 2019; 123:4755-4763. [PMID: 31050423 DOI: 10.1021/acs.jpca.9b02919] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
We present the first variational calculation of a hot-temperature ab initio line list for the CH3 radical. It is based on a high-level ab initio potential energy surface and dipole moment surface of CH3 in the ground electronic state. The ro-vibrational energy levels and Einstein A coefficients were calculated using the general-molecule variational approach implemented in the computer program TROVE. Vibrational energies and vibrational intensities are found to be in very good agreement with the available experimental data. The line list comprises 9 127 123 ro-vibrational states ( J ≤ 40) and 2 058 655 166 transitions, covering the wavenumber range up to 10 000 cm-1 and should be suitable for temperatures up to T = 1500 K.
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Affiliation(s)
- Ahmad Y Adam
- Fakultät für Mathematik und Naturwissenschaften, Physikalische und Theoretische Chemie , Bergische Universität Wuppertal , D-42097 Wuppertal , Germany
| | - Andrey Yachmenev
- Center for Free-Electron Laser Science , Deutsches Elektronen-Synchrotron DESY , Notkestraβe 85 , D-22607 Hamburg , Germany.,The Hamburg Center for Ultrafast Imaging , Universität Hamburg , Luruper Chaussee 149 , D-22761 Hamburg , Germany
| | - Sergei N Yurchenko
- Department of Physics and Astronomy , University College London , Gower Street , WC1E 6BT London , U.K
| | - Per Jensen
- Fakultät für Mathematik und Naturwissenschaften, Physikalische und Theoretische Chemie , Bergische Universität Wuppertal , D-42097 Wuppertal , Germany
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23
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Canè E, Di Lonardo G, Fusina L, Tamassia F, Predoi-Cross A. The v 2 = 1, 2 and v 4 = 1 bending states of 15NH 3 and their analysis at experimental accuracy. J Chem Phys 2019; 150:194301. [PMID: 31117788 DOI: 10.1063/1.5088751] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
15NH3 is the object of extensive investigation due to the central role of ammonia in astronomical sciences and to the complexity of modeling its interacting vibrationally excited states. Of major interest in astrochemistry is the determination of the 14N/15N ratio in space, characterized by unexpected variability among different solar system objects and reservoirs. Recently, the spectroscopic analysis of ground and v2 = 1 a, s states of 15NH3 has been completed at experimental accuracy. Here, the characterization of the a, s inversion symmetry levels of v2 = 1, 2 and v4 = 1 states is presented. New spectra of 15NH3 have been recorded from 325 to 2000 cm-1 at a resolution ranging from 0.00096 cm-1 to 0.003 cm-1, using the Canadian Light Source synchrotron at CLS. 7518 transitions covering nine bands, ν2, 2ν2, ν4, 2ν2 ← ν2, ν4 ← ν2, 2ν2 ↔ ν4 and the inversion-rotation transitions in the excited states, have been fitted simultaneously. The effective Hamiltonian adopted includes all symmetry allowed interactions between and within the studied excited states, according to the most recent results on ammonia. The transitions have been reproduced at experimental accuracy using 185 spectroscopic parameters, determined with high precision. The leading diagonal parameters, Gv, B, C, D's, compare well with those of 14NH3. The wavenumbers of the assigned transitions are compared with their theoretically predicted values. An improved set of ground state parameters is also derived. These results noticeably improve the wavenumber line list in the high-resolution transmission molecular absorption (HITRAN) database.
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Affiliation(s)
- E Canè
- Dipartimento di Chimica Industriale " Toso Montanari," Università di Bologna, Viale del Risorgimento 4, 40136 Bologna, Italy
| | - G Di Lonardo
- Dipartimento di Chimica Industriale " Toso Montanari," Università di Bologna, Viale del Risorgimento 4, 40136 Bologna, Italy
| | - L Fusina
- Dipartimento di Chimica Industriale " Toso Montanari," Università di Bologna, Viale del Risorgimento 4, 40136 Bologna, Italy
| | - F Tamassia
- Dipartimento di Chimica Industriale " Toso Montanari," Università di Bologna, Viale del Risorgimento 4, 40136 Bologna, Italy
| | - A Predoi-Cross
- Alberta Terrestrial Imaging Centre, Department of Physics and Astronomy, University of Lethbridge, 4401 University Drive, Lethbridge, Alberta T1K 3M4, Canada
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24
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Owens A, Yurchenko SN. Theoretical rotation-vibration spectroscopy of cis- and trans-diphosphene (P 2H 2) and the deuterated species P 2HD. J Chem Phys 2019; 150:194308. [PMID: 31117776 DOI: 10.1063/1.5092767] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Growing astronomical interest in phosphorous (P) chemistry is stimulating the search for new interstellar P-bearing molecules, a task requiring detailed knowledge of the microwave and infrared molecular spectrum. In this work, we present comprehensive rotation-vibration line lists of the cis- and trans-isomers of diphosphene (P2H2). The line lists have been generated using robust, first-principles methodologies based on newly computed, high-level ab initio potential energy and dipole moment surfaces. Transitions are considered between states with energies up to 8000 cm-1 and total angular momentum J ≤ 25. These are the first-ever line lists to be reported for P2H2, and they should significantly facilitate future spectroscopic characterization of this system. The deuterated species trans-P2HD and the effect of its dynamic dipole moment on the rovibrational spectrum are also discussed.
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Affiliation(s)
- Alec Owens
- Department of Physics and Astronomy, University College London, Gower Street, WC1E 6BT London, United Kingdom
| | - Sergei N Yurchenko
- Department of Physics and Astronomy, University College London, Gower Street, WC1E 6BT London, United Kingdom
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25
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Avila G, Mátyus E. Toward breaking the curse of dimensionality in (ro)vibrational computations of molecular systems with multiple large-amplitude motions. J Chem Phys 2019; 150:174107. [PMID: 31067897 DOI: 10.1063/1.5090846] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Methodological progress is reported in the challenging direction of a black-box-type variational solution of the (ro)vibrational Schrödinger equation applicable to floppy, polyatomic systems with multiple large-amplitude motions. This progress is achieved through the combination of (i) the numerical kinetic-energy operator (KEO) approach of Mátyus et al. [J. Chem. Phys. 130, 134112 (2009)] and (ii) the Smolyak nonproduct grid method of Avila and Carrington, Jr. [J. Chem. Phys. 131, 174103 (2009)]. The numerical representation of the KEO makes it possible to choose internal coordinates and a body-fixed frame best suited for the molecular system. The Smolyak scheme reduces the size of the direct-product grid representation by orders of magnitude, while retaining some of the useful features of it. As a result, multidimensional (ro)vibrational states are computed with system-adapted coordinates, a compact basis- and grid-representation, and an iterative eigensolver. Details of the methodological developments and the first numerical applications are presented for the CH4·Ar complex treated in full (12D) vibrational dimensionality.
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Affiliation(s)
- Gustavo Avila
- Institute of Chemistry, ELTE, Eötvös Loránd University, Pázmány Péter sétány 1/A, Budapest 1117, Hungary
| | - Edit Mátyus
- Institute of Chemistry, ELTE, Eötvös Loránd University, Pázmány Péter sétány 1/A, Budapest 1117, Hungary
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26
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Mant BP, Chubb KL, Yachmenev A, Tennyson J, Yurchenko SN. The infrared spectrum of PF3 and analysis of rotational energy clustering effect. Mol Phys 2019. [DOI: 10.1080/00268976.2019.1581951] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Affiliation(s)
- Barry P. Mant
- Department of Physics and Astronomy, University College London, London, UK
| | - Katy L. Chubb
- Department of Physics and Astronomy, University College London, London, UK
| | - Andrey Yachmenev
- The Hamburg Center for Ultrafast Imaging, Universität Hamburg, Hamburg, Germany
- Center for Free-Electron Laser Science (CFEL), Deutsches Elektronen-Synchrotron DESY, Hamburg, Germany
| | - Jonathan Tennyson
- Department of Physics and Astronomy, University College London, London, UK
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27
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Fábri C, Marquardt R, Császár AG, Quack M. Controlling tunneling in ammonia isotopomers. J Chem Phys 2019; 150:014102. [DOI: 10.1063/1.5063470] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Csaba Fábri
- Laboratory of Molecular Structure and Dynamics, Institute of Chemistry, Eötvös Loránd University, Pázmány Péter sétány 1/A, H-1117 Budapest, Hungary
- MTA-ELTE Complex Chemical Systems Research Group, P.O. Box 32, H-1518 Budapest 112, Hungary
- Physical Chemistry, ETH Zürich, CH-8093 Zürich, Switzerland
| | - Roberto Marquardt
- Physical Chemistry, ETH Zürich, CH-8093 Zürich, Switzerland
- Laboratoire de Chimie Quantique, Institut de Chimie UMR 7177 CNRS/Université de Strasbourg, 4, Rue Blaise Pascal CS 90032, 67081 Strasbourg Cedex, France
| | - Attila G. Császár
- Laboratory of Molecular Structure and Dynamics, Institute of Chemistry, Eötvös Loránd University, Pázmány Péter sétány 1/A, H-1117 Budapest, Hungary
- MTA-ELTE Complex Chemical Systems Research Group, P.O. Box 32, H-1518 Budapest 112, Hungary
| | - Martin Quack
- Physical Chemistry, ETH Zürich, CH-8093 Zürich, Switzerland
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28
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Qu C, Bowman JM. Quantum approaches to vibrational dynamics and spectroscopy: is ease of interpretation sacrificed as rigor increases? Phys Chem Chem Phys 2019; 21:3397-3413. [DOI: 10.1039/c8cp04990d] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Abstract
The subject of this Perspective is quantum approaches, beyond the harmonic approximation, to vibrational dynamics and IR spectroscopy.
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Affiliation(s)
- Chen Qu
- Department of Chemistry and Cherry L. Emerson Center for Scientific Computation, Emory University
- Atlanta
- USA
| | - Joel M. Bowman
- Department of Chemistry and Cherry L. Emerson Center for Scientific Computation, Emory University
- Atlanta
- USA
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29
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Coles PA, Yurchenko SN, Kovacich RP, Hobby J, Tennyson J. A variationally computed room temperature line list for AsH3. Phys Chem Chem Phys 2019; 21:3264-3277. [DOI: 10.1039/c8cp07110a] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Calculations are reported on the rotation–vibration energy levels of the arsine molecule with associated transition intensities.
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Affiliation(s)
- Phillip A. Coles
- Department of Physics & Astronomy
- University College London
- London WC1E 6BT
- UK
| | | | | | - James Hobby
- Servomex Ltd
- Millbrook Industrial Estate
- Crowborough TN6 3FB
- UK
| | - Jonathan Tennyson
- Department of Physics & Astronomy
- University College London
- London WC1E 6BT
- UK
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30
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Owens A, Yachmenev A, Küpper J, Yurchenko SN, Thiel W. The rotation–vibration spectrum of methyl fluoride from first principles. Phys Chem Chem Phys 2019; 21:3496-3505. [DOI: 10.1039/c8cp01721b] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
State-of-the-art theoretical methods are used to investigate the rotation–vibration spectrum of methyl fluoride.
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Affiliation(s)
- Alec Owens
- Center for Free-Electron Laser Science (CFEL)
- Deutsches Elektronen-Synchrotron DESY
- 22607 Hamburg
- Germany
- The Hamburg Center for Ultrafast Imaging
| | - Andrey Yachmenev
- Center for Free-Electron Laser Science (CFEL)
- Deutsches Elektronen-Synchrotron DESY
- 22607 Hamburg
- Germany
- The Hamburg Center for Ultrafast Imaging
| | - Jochen Küpper
- Center for Free-Electron Laser Science (CFEL)
- Deutsches Elektronen-Synchrotron DESY
- 22607 Hamburg
- Germany
- The Hamburg Center for Ultrafast Imaging
| | - Sergei N. Yurchenko
- Department of Physics and Astronomy
- University College London
- WC1E 6BT London
- UK
| | - Walter Thiel
- Max-Planck-Institut für Kohlenforschung
- 45470 Mülheim an der Ruhr
- Germany
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31
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Owens A, Yachmenev A, Yurchenko SN, Küpper J. Climbing the Rotational Ladder to Chirality. PHYSICAL REVIEW LETTERS 2018; 121:193201. [PMID: 30468590 DOI: 10.1103/physrevlett.121.193201] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/03/2018] [Revised: 09/02/2018] [Indexed: 06/09/2023]
Abstract
Molecular chirality is conventionally understood as space-inversion-symmetry breaking in the equilibrium structure of molecules. Less well known is that achiral molecules can be made chiral through extreme rotational excitation. Here, we theoretically demonstrate a clear strategy for generating rotationally induced chirality: An optical centrifuge rotationally excites the phosphine molecule (PH_{3}) into chiral cluster states that correspond to clockwise (R enantiomer) or anticlockwise (L enantiomer) rotation about axes almost coinciding with single P─H bonds. The application of a strong dc electric field during the centrifuge pulse favors the production of one rotating enantiomeric form over the other, creating dynamically chiral molecules with permanently oriented rotational angular momentum. This essential step toward characterizing rotationally induced chirality promises a fresh perspective on chirality as a fundamental aspect of nature.
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Affiliation(s)
- Alec Owens
- Center for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
- The Hamburg Center for Ultrafast Imaging, Universität Hamburg, Luruper Chaussee 149, 22761 Hamburg, Germany
| | - Andrey Yachmenev
- Center for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
- The Hamburg Center for Ultrafast Imaging, Universität Hamburg, Luruper Chaussee 149, 22761 Hamburg, Germany
| | - Sergei N Yurchenko
- Department of Physics and Astronomy, University College London, Gower Street, WC1E 6BT London, United Kingdom
| | - Jochen Küpper
- Center for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
- The Hamburg Center for Ultrafast Imaging, Universität Hamburg, Luruper Chaussee 149, 22761 Hamburg, Germany
- Department of Physics, Universität Hamburg, Luruper Chaussee 149, 22761 Hamburg, Germany
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32
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Nikitin AV, Protasevich AE, Rey M, Tyuterev VG. Highly excited vibrational levels of methane up to 10 300 cm -1: Comparative study of variational methods. J Chem Phys 2018; 149:124305. [PMID: 30278662 DOI: 10.1063/1.5042154] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023] Open
Abstract
In this work, we report calculated vibrational energy levels of the methane molecule up to 10 300 cm-1. Two potential energy surfaces constructed in quite different coordinate systems with different analytical representations are employed in order to evaluate the uncertainty of vibrational predictions. To calculate methane energy levels, we used two independent techniques of the variational method. One method uses an exact kinetic energy operator in internal curvilinear coordinates. Another one uses an expansion of Eckart-Watson nuclear motion Hamiltonian in rectilinear normal coordinates. In the Icosad range (up to five vibrational quanta bands-below 7800 cm-1), the RMS standard deviations between calculated and observed energy levels were 0.22 cm-1 and 0.41 cm-1 for these two quite different approaches. For experimentally well-known 3v3 sub-levels, the calculation accuracy is estimated to be ∼1 cm-1. In the Triacontad range (7660-9188 cm-1), the average error of the calculation is about 0.5 cm-1. The accuracy and convergence issues for higher energy ranges are discussed.
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Affiliation(s)
- Andrei V Nikitin
- V.E. Zuev Institute of Atmospheric Optics, Russian Academy of Sciences, 1, Akademichesky Avenue, 634055 Tomsk, Russian Federation
| | - Alexander E Protasevich
- V.E. Zuev Institute of Atmospheric Optics, Russian Academy of Sciences, 1, Akademichesky Avenue, 634055 Tomsk, Russian Federation
| | - Michael Rey
- Groupe de Spectrométrie Moléculaire et Atmosphérique, UMR CNRS 7331, Université de Reims, U.F.R. Sciences, B.P. 1039, 51687 Reims Cedex 2, France
| | - Vladimir G Tyuterev
- Groupe de Spectrométrie Moléculaire et Atmosphérique, UMR CNRS 7331, Université de Reims, U.F.R. Sciences, B.P. 1039, 51687 Reims Cedex 2, France
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33
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34
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Owens A, Yachmenev A. RichMol: A general variational approach for rovibrational molecular dynamics in external electric fields. J Chem Phys 2018; 148:124102. [DOI: 10.1063/1.5023874] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Alec Owens
- Center for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron DESY, Notkestrasse 85, 22607 Hamburg, Germany
- The Hamburg Center for Ultrafast Imaging, Universität Hamburg, Luruper Chaussee 149, 22761 Hamburg, Germany
| | - Andrey Yachmenev
- Center for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron DESY, Notkestrasse 85, 22607 Hamburg, Germany
- The Hamburg Center for Ultrafast Imaging, Universität Hamburg, Luruper Chaussee 149, 22761 Hamburg, Germany
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35
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Yachmenev A, Küpper J. Communication: General variational approach to nuclear-quadrupole coupling in rovibrational spectra of polyatomic molecules. J Chem Phys 2017; 147:141101. [PMID: 29031262 DOI: 10.1063/1.5002533] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
A general algorithm for computing the quadrupole-hyperfine effects in the rovibrational spectra of polyatomic molecules is presented for the case of ammonia (NH3). The method extends the general variational approach TROVE [J. Mol. Spectrosc. 245, 126-140 (2007)] by adding the extra term in the Hamiltonian that describes the nuclear quadrupole coupling, with no inherent limitation on the number of quadrupolar nuclei in a molecule. We applied the new approach to compute the nitrogen-nuclear-quadrupole hyperfine structure in the rovibrational spectrum of NH314. These results agree very well with recent experimental spectroscopic data for the pure rotational transitions in the ground vibrational and ν2 states and the rovibrational transitions in the ν1, ν3, 2ν4, and ν1 + ν3 bands. The computed hyperfine-resolved rovibrational spectrum of ammonia will be beneficial for the assignment of experimental rovibrational spectra, further detection of ammonia in interstellar space, and studies of the proton-to-electron mass variation.
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Affiliation(s)
- Andrey Yachmenev
- Center for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron DESY, Notkestrasse 85, 22607 Hamburg, Germany
| | - Jochen Küpper
- Center for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron DESY, Notkestrasse 85, 22607 Hamburg, Germany
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36
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Fábri C, Quack M, Császár AG. On the use of nonrigid-molecular symmetry in nuclear motion computations employing a discrete variable representation: A case study of the bending energy levels of C H 5 +. J Chem Phys 2017; 147:134101. [DOI: 10.1063/1.4990297] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Csaba Fábri
- Laboratory of Molecular Structure and Dynamics, Institute of Chemistry, Eötvös University, Pázmány Péter sétány 1/A, H-1117 Budapest, Hungary
- Physical Chemistry, ETH Zürich, CH-8093 Zürich, Switzerland
| | - Martin Quack
- Physical Chemistry, ETH Zürich, CH-8093 Zürich, Switzerland
| | - Attila G. Császár
- Laboratory of Molecular Structure and Dynamics, Institute of Chemistry, Eötvös University, Pázmány Péter sétány 1/A, H-1117 Budapest, Hungary
- MTA-ELTE Complex Chemical Systems Research Group, P.O. Box 32, H-1518 Budapest 112, Hungary
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37
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Tennyson J, Yurchenko SN. Laboratory spectra of hot molecules: Data needs for hot super-Earth exoplanets. ACTA ACUST UNITED AC 2017. [DOI: 10.1016/j.molap.2017.05.002] [Citation(s) in RCA: 64] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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38
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Yurchenko SN, Yachmenev A, Ovsyannikov RI. Symmetry-Adapted Ro-vibrational Basis Functions for Variational Nuclear Motion Calculations: TROVE Approach. J Chem Theory Comput 2017; 13:4368-4381. [DOI: 10.1021/acs.jctc.7b00506] [Citation(s) in RCA: 49] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Sergei N. Yurchenko
- Department
of Physics and Astronomy, University College London, London, WC1E 6BT, United Kingdom
| | - Andrey Yachmenev
- Center for Free-Electron Laser Science (CFEL), DESY, Notkestrasse 85, 22607 Hamburg, Germany
| | - Roman I. Ovsyannikov
- Institute of Applied Physics, Russian Academy of Sciences, Ulyanov Street 46, Nizhny Novgorod, Russia 603950
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39
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Carrington T. Perspective: Computing (ro-)vibrational spectra of molecules with more than four atoms. J Chem Phys 2017; 146:120902. [DOI: 10.1063/1.4979117] [Citation(s) in RCA: 67] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Tucker Carrington
- Chemistry Department, Queen’s University, Kingston, Ontario
K7L 3N6, Canada
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40
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Nikitin A, Rey M, Rodina A, Krishna BM, Tyuterev VG. Full-Dimensional Potential Energy and Dipole Moment Surfaces of GeH4 Molecule and Accurate First-Principle Rotationally Resolved Intensity Predictions in the Infrared. J Phys Chem A 2016; 120:8983-8997. [DOI: 10.1021/acs.jpca.6b07732] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- A.V. Nikitin
- Laboratory
of Theoretical Spectroscopy, V. E. Zuev Institute of Atmospheric Optics, SB RAS, 1, Academician Zuev Square, 634021 Tomsk, Russia
| | - M. Rey
- Groupe
de Spectrométrie Moléculaire et Atmosphérique,
UMR CNRS 7331, Université de Reims, U.F.R. Sciences, B.P. 1039, 51687 Reims Cedex 2, France
| | - A. Rodina
- Laboratory
of Quantum Mechanics of Molecules and Radiative Processes, Tomsk State University, 36 Lenin Avenue, 634050 Tomsk, Russia
| | - B. M. Krishna
- Laboratory
of Quantum Mechanics of Molecules and Radiative Processes, Tomsk State University, 36 Lenin Avenue, 634050 Tomsk, Russia
| | - Vl. G. Tyuterev
- Groupe
de Spectrométrie Moléculaire et Atmosphérique,
UMR CNRS 7331, Université de Reims, U.F.R. Sciences, B.P. 1039, 51687 Reims Cedex 2, France
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41
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Melnikov VV, Yurchenko SN, Tennyson J, Jensen P. Radiative cooling of H 3O + and its deuterated isotopologues. Phys Chem Chem Phys 2016; 18:26268-26274. [PMID: 27711706 PMCID: PMC5315019 DOI: 10.1039/c6cp04661d] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2016] [Accepted: 08/28/2016] [Indexed: 11/21/2022]
Abstract
In conjunction with ab initio potential energy and dipole moment surfaces for the electronic ground state, we have made a theoretical study of the radiative lifetimes for the hydronium ion H3O+ and its deuterated isotopologues. We compute the ro-vibrational energy levels and their associated wavefunctions together with Einstein coefficients for electric dipole transitions. A detailed analysis of the stability of the ro-vibrational states has been carried out and the longest-living states of the hydronium ions have been identified. We report estimated radiative lifetimes and cooling functions for temperatures <200 K. A number of long-living meta-stable states are identified, capable of population trapping.
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Affiliation(s)
- Vladlen V Melnikov
- Siberian Institute of Physics & Technology, Tomsk State University, Tomsk, 634050, Russia
| | - Sergei N Yurchenko
- Department of Physics & Astronomy, University College London, London WC1E 6BT, UK.
| | - Jonathan Tennyson
- Department of Physics & Astronomy, University College London, London WC1E 6BT, UK.
| | - Per Jensen
- Physikalische und Theoretische Chemie, Fakultät für Mathematik und Naturwissenschaften, Bergische Universität Wuppertal, 42097 Wuppertal, Germany
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42
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Nikitin AV, Rey M, Tyuterev VG. First fullyab initiopotential energy surface of methane with a spectroscopic accuracy. J Chem Phys 2016. [DOI: 10.1063/1.4961973] [Citation(s) in RCA: 41] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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43
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Owens A, Yurchenko SN, Yachmenev A, Tennyson J, Thiel W. A highly accurate ab initio potential energy surface for methane. J Chem Phys 2016; 145:104305. [DOI: 10.1063/1.4962261] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Alec Owens
- Department of Physics and Astronomy, University College London, Gower Street, WC1E 6BT London, United Kingdom
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr, Germany
| | - Sergei N. Yurchenko
- Department of Physics and Astronomy, University College London, Gower Street, WC1E 6BT London, United Kingdom
| | - Andrey Yachmenev
- Department of Physics and Astronomy, University College London, Gower Street, WC1E 6BT London, United Kingdom
| | - Jonathan Tennyson
- Department of Physics and Astronomy, University College London, Gower Street, WC1E 6BT London, United Kingdom
| | - Walter Thiel
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr, Germany
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44
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Gianfrani L. Linking the thermodynamic temperature to an optical frequency: recent advances in Doppler broadening thermometry. PHILOSOPHICAL TRANSACTIONS. SERIES A, MATHEMATICAL, PHYSICAL, AND ENGINEERING SCIENCES 2016; 374:20150047. [PMID: 26903093 PMCID: PMC4760123 DOI: 10.1098/rsta.2015.0047] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Accepted: 11/03/2015] [Indexed: 06/05/2023]
Abstract
Laser spectroscopy in the linear regime of radiation-matter interaction is a powerful tool for measuring thermodynamic quantities in a gas at thermodynamic equilibrium. In particular, the Doppler effect can be considered a gift of nature, linking the thermal energy to an optical frequency, namely the line centre frequency of an atomic or molecular spectral line. This is the basis of a relatively new method of primary gas thermometry, known as Doppler broadening thermometry (DBT). This paper reports on the efforts that have been carried out, in the last decade, worldwide, to the end of making DBT competitive with more consolidated and accurate methodologies, such as acoustic gas thermometry and dielectric constant gas thermometry. The main requirements for low-uncertainty DBT, of both theoretical and technical nature, will be discussed, with a special focus on those related to the line shape model and to the frequency scale. A deep comparison among the different molecules that have been selected in successful DBT implementations is also reported. Finally, for the first time, to the best of my knowledge, the influence of refractive index effects is discussed.
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Affiliation(s)
- Livio Gianfrani
- Dipartimento di Matematica e Fisica, Seconda Università degli studi di Napoli, Caserta, Italy INRIM, Istituto Nazionale di Ricerca Metrologica, Torino, Italy
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45
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Lauvergnat D, Luis JM, Kirtman B, Reis H, Nauts A. Numerical and exact kinetic energy operator using Eckart conditions with one or several reference geometries: Application to HONO. J Chem Phys 2016; 144:084116. [DOI: 10.1063/1.4942172] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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46
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Adam AY, Yachmenev A, Yurchenko SN, Jensen P. Ro-vibrational averaging of the isotropic hyperfine coupling constant for the methyl radical. J Chem Phys 2015; 143:244306. [PMID: 26723670 DOI: 10.1063/1.4938253] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
We present the first variational calculation of the isotropic hyperfine coupling constant of the carbon-13 atom in the CH3 radical for temperatures T = 0, 96, and 300 K. It is based on a newly calculated high level ab initio potential energy surface and hyperfine coupling constant surface of CH3 in the ground electronic state. The ro-vibrational energy levels, expectation values for the coupling constant, and its temperature dependence were calculated variationally by using the methods implemented in the computer program TROVE. Vibrational energies and vibrational and temperature effects for coupling constant are found to be in very good agreement with the available experimental data. We found, in agreement with previous studies, that the vibrational effects constitute about 44% of the constant's equilibrium value, originating mainly from the large amplitude out-of-plane bending motion and that the temperature effects play a minor role.
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Affiliation(s)
- Ahmad Y Adam
- Fakultät Mathematik und Naturwissenschaften, Physikalische und Theoretische Chemie, Bergische Universität Wuppertal, D-42097 Wuppertal, Germany
| | - Andrey Yachmenev
- Department of Physics and Astronomy, University College London, Gower Street, London WC1E 6BT, United Kingdom
| | - Sergei N Yurchenko
- Department of Physics and Astronomy, University College London, Gower Street, London WC1E 6BT, United Kingdom
| | - Per Jensen
- Fakultät Mathematik und Naturwissenschaften, Physikalische und Theoretische Chemie, Bergische Universität Wuppertal, D-42097 Wuppertal, Germany
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47
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Owens A, Yurchenko SN, Yachmenev A, Thiel W. A global potential energy surface and dipole moment surface for silane. J Chem Phys 2015; 143:244317. [DOI: 10.1063/1.4938563] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Alec Owens
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr, Germany
- Department of Physics and Astronomy, University College London, Gower Street, WC1E 6BT London, United Kingdom
| | - Sergei N. Yurchenko
- Department of Physics and Astronomy, University College London, Gower Street, WC1E 6BT London, United Kingdom
| | - Andrey Yachmenev
- Department of Physics and Astronomy, University College London, Gower Street, WC1E 6BT London, United Kingdom
| | - Walter Thiel
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr, Germany
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48
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Abstract
A novel model for the analysis of the rovibrational structure of a molecule based on anharmonic ladder operators associated with the vibrational degrees of freedom is presented. This is devised as an alternative method for the global spectral analysis of rovibrational data considering vibrational anharmonicities from the outset. The present method is thought up with an effective rovibrational Hamiltonian written in terms of angular momentum components and anharmonic Morse ladder operators, associated with rotational and vibrational degrees of freedom, respectively. The resulting Hamiltonian is diagonalized in a symmetry-adapted basis set expressed as a product of rotational states and individual 1D-Morse wave functions for each local vibrational degree of freedom. This approach has been successfully applied to the study of the vibrational structure (up to polyad 14) and the rovibrational structure (up to polyad 2 and J(max) = 20) of hydrogen sulfide. It was shown that this new global analysis formalism is able to reduce considerably the number of fitted parameters with respect to the spectral analysis carried out for separate polyads.
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Affiliation(s)
- Miguel Carvajal
- Dpto. Física Aplicada, Unidad Asociada CSIC, Facultad de Ciencias Experimentales, Universidad de Huelva , 21071 Huelva, Spain
| | - Renato Lemus
- Instituto de Ciencias Nucleares, Universidad Nacional Autónoma de México , Apartado Postal 70-543, 04510 México, DF, Mexico
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49
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Yachmenev A, Yurchenko SN. Automatic differentiation method for numerical construction of the rotational-vibrational Hamiltonian as a power series in the curvilinear internal coordinates using the Eckart frame. J Chem Phys 2015; 143:014105. [DOI: 10.1063/1.4923039] [Citation(s) in RCA: 59] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Andrey Yachmenev
- Department of Physics and Astronomy, University College London, Gower Street, London WC1E 6BT, United Kingdom
| | - Sergei N. Yurchenko
- Department of Physics and Astronomy, University College London, Gower Street, London WC1E 6BT, United Kingdom
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50
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Owens A, Yurchenko SN, Yachmenev A, Tennyson J, Thiel W. Accurate ab initio vibrational energies of methyl chloride. J Chem Phys 2015; 142:244306. [DOI: 10.1063/1.4922890] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Alec Owens
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr, Germany
- Department of Physics and Astronomy, University College London, Gower Street, WC1E 6BT London, United Kingdom
| | - Sergei N. Yurchenko
- Department of Physics and Astronomy, University College London, Gower Street, WC1E 6BT London, United Kingdom
| | - Andrey Yachmenev
- Department of Physics and Astronomy, University College London, Gower Street, WC1E 6BT London, United Kingdom
| | - Jonathan Tennyson
- Department of Physics and Astronomy, University College London, Gower Street, WC1E 6BT London, United Kingdom
| | - Walter Thiel
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr, Germany
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