A New Proposal for the Ground State of the FeO− Cluster in the Gas Phase and for the Assignment of Its Photoelectron Spectra

Evolution of the atomic and electronic structures of CuO clusters: a comprehensive study using the DFT approach

One of the most fundamental aspects of cluster science is to understand the structural evolution at the atomic scale. In this connection, here we report a comprehensive study of the atomic and electronic structures of (CuO)n clusters for n = 1 to 12 using DFT-based formalisms. Both the plane wave-based pseudo-potential approach and LCAO-MO-based method have been employed to obtain the ground state geometries of neutral, cation and anion copper oxide clusters. The results reveal that neutral copper oxide clusters favor a planar ring structure up to heptamer and from octamer onwards they adopt a three-dimensional motif with (CuO)9 and (CuO)12 forming a barrel-shaped layered structure. Detailed electronic structure analysis reveals that the transition of the atomic structure from 2D to 3D is guided by the energy balance of the Cu-O (d-p) and Cu-Cu (d-d) bonds. The removal of one electron from the cluster (cation) results in slightly stretched bonds while the addition of one electron (anion) showed compression in the overall geometries. The thermodynamic and electronic stability of these clusters has been analyzed by estimating their binding energy, ionization energy and electron affinity as a function of size. Remarkably, among these clusters, the octamer (CuO)8 and dodecamer (CuO)12 show higher binding energy and electron affinity (∼6.5 eV) with lower ionization energy (5.5-6.0 eV). This unique feature of the octamer and dodecamer indicates that they are very promising candidates for both oxidizing and reducing agents in different important chemical reactions.

Noncovalent π Interactions in Mutated Aquomet-Myoglobin Proteins: A QM/MM and Local Vibrational Mode Study

Protein dynamics and function is strongly connected to the energy flow taking place. Myoglobin (Mb) and its mutations are ideal systems to study the process of vibrational energy transfer (VET) at the molecular level. Anti-Stokes ultraviolet resonance Raman studies using a tryptophan (Trp) probe, introduced at different Mb positions by amino acid replacement, have suggested that the amount of VET depends on the position of the Trp probe relative to the heme group. Inspired by this experimental work, we explored the strength of noncovalent π interactions, as well as covalent interactions for both the axial and distal ligands bound to iron in aquomet-Mb with the local vibrational mode analysis (LMA), originally developed by Konkoli and Cremer. Two sets of noncovalent interactions were investigated: (1) the interaction between the water ligand and Trp rings and (2) the interaction between the Trp and the porphyrin rings of the heme group. We assessed the strength of these noncovalent interactions via a special local mode force constant. Various Trp-modified water-bound ferric Mb proteins in the ground state were studied (6 in total) using gas-phase and QM/MM calculations followed by LMA. Our results disclose that VET is indeed dependent on the position of the Trp probe relative to the heme group but also on the tautomeric nature of distal histidine. They provide new guidelines on how to assess noncovalent π interactions in proteins utilizing LMA and how to use these data to explore VET, and more generally protein dynamics and function.

Ultrafast pump-probe spectroscopy of neutral FenOm clusters (n, m < 16)

Neutral iron oxide clusters (FenOm, n, m ≤ 16) are produced in a laser vaporization source using O2 gas seeded in He. The neutral clusters are ionized with a sequence of femtosecond laser pulses and detected using time-of-flight mass spectrometry. Small clusters are confirmed to be most prominent in the stoichiometric (n = m) distribution, with m = n + 1 clusters observed above n = 4. Pump-probe spectroscopy is employed to study the dynamics of an electron transfer from an oxygen orbital to an iron nonbonding orbital of iron oxide clusters that is driven by absorption of a 400 nm photon. A bifurcation of the initial wavepacket occurs, where a femtosecond component is attributed to electron relaxation assisted through internuclear vibrational relaxation and high density of states, and a slow relaxation shows the formation of a bound excited state. The lifetime and relative ratio of the two pathways depend on both the cluster size and iron oxidation state. The femtosecond lifetime decreases with increased cluster size until a saturation timescale is achieved at n > 5. The relative population of the long-lived excited state decreases with cluster size and suggests that the excited electron remains on the Fe atom for >20 ps.

Effect of hydrogenation on the structure and magnetic properties of an iron oxide cluster

Hydrogenation of an iron oxide particle influences the geometrical topology and total magnetic moment and invokes different superexchange mechanisms.

Assignment of the photoelectron spectra of FeS3(-) by density functional theory, CASPT2, and RCCSD(T) calculations

The geometric structures of FeS(3) and FeS(3)(-) with spin multiplicities ranging from singlet to octet were optimized at the B3LYP level, allowing two low-lying conformations for these clusters to be identified. The planar D(3h) conformation contains three S(2-) atomic ligands (S(3)Fe(0/-)), whereas the C(2v) structure contains, in addition to an atomic S(2-) ligand, also a S(2)(2-) ligand that is side-on-bound to the iron cation: an η(2)-S(2)FeS conformation. Subsequently, energy differences between the various states of these conformations were estimated by carrying out geometry optimizations at the multireference CASPT2 level. Several competing structures for the ground state of the anionic cluster were recognized at this level. Relative stabilities were also estimated by performing single-point RCSSD(T) calculations on the B3LYP geometries. The ground state of the neutral complex was unambiguously found to be (5)B(2). The ground state of the anion is considerably less certain. The 1(4)B(2), 2(4)B(2), (4)B(1), and (6)A(1) states were all found as low-lying η(2)-S(2)FeS(-) states. Also, (4)B(2) of S(3)Fe(-) has a comparable CASPT2 energy. In contrast, B3LYP and RCCSD(T) mutually agree that the S(3)Fe(-) state is at a much higher energy. Energetically, the bands of the photoelectron spectra of FeS(3)(-) are reproduced at the CASPT2 level as ionizations from either the (4)B(2) or (6)A(1) state of η(2)-S(2)FeS. However, the Franck-Condon factors obtained from a harmonic vibrational analysis at the B3LYP level show that only the (4)B(2)-to-(5)B(2) ionization, which preserves the η(2)-S(2)Fe-S conformation, provides the best vibrational progression match with the X band of the experimental photoelectron spectra.