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Stanbury DM, Hoffman D. Systematic Application of the Principle of Detailed Balancing to Complex Homogeneous Chemical Reaction Mechanisms. J Phys Chem A 2019; 123:5436-5445. [PMID: 31240925 DOI: 10.1021/acs.jpca.9b03771] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
It is not uncommon for proposed complex reaction mechanisms to violate the principle of detailed balancing. Here, we draw attention to three ways in which such violations can occur: reversible reaction loops where the rate constants do not attain closure, illegal loops, and reversible steps having rate equations in the forward and reverse directions that are inconsistent with the equilibrium expressions. We present two simple methods to test whether a proposed mechanism is consistent with the first two aspects of the principle of detailed balancing. Both methods are restricted to closed homogeneous isothermal reactions having mechanisms that consist of stoichiometrically balanced reaction steps. The first method is restricted to mechanisms in which all reaction steps are reversible; values of Δf G° are assigned to all reaction species, equilibrium constants are then computed for all steps, and all rate constants for elementary steps are constrained by the relationship Keq = kf/ kr. The second method is applicable to mechanisms that can consist of a series of reversible and/or irreversible reaction steps. One first examines the subset of reversible steps to determine whether any of these steps are stoichiometrically equivalent to a combination of any of the other steps. If so, the forward and reverse rate expressions must yield equilibrium constants that are in agreement with the stoichiometric relationships. Next, the complete set of steps is examined to look for "illegal reaction loops". Both of these procedures are performed by constructing matrices that represent the stoichiometries of the various reaction steps and then performing row reductions to identify basis sets of loops. A method based on linear programming is described that determines whether a mechanism contains any illegal loops. These methods are applied in the analysis of several published reaction mechanisms.
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Bhattarai N, Stanbury DM. Oxidation of Cysteinesulfinic Acid by Hexachloroiridate(IV). J Phys Chem B 2014; 118:1097-101. [DOI: 10.1021/jp4116723] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Affiliation(s)
- Nootan Bhattarai
- Department of Chemistry and
Biochemistry, Auburn University, Auburn, Alabama 36849, United States
| | - David M. Stanbury
- Department of Chemistry and
Biochemistry, Auburn University, Auburn, Alabama 36849, United States
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Martincigh BS, Mhike M, Morakinyo K, Adigun RA, Simoyi RH. Oxyhalogen–Sulfur Chemistry: Oxidation of a Thiourea Dimer, Formamidine Disulfide, by Chlorine Dioxide. Aust J Chem 2013. [DOI: 10.1071/ch12181] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
The oxidation of formamidine disulfide, FDS, the dimer of thiourea, by aqueous chlorine dioxide has been studied in highly acidic and mildly acidic media. FDS is one of the possible oxidation intermediates formed in the oxidation of thiourea by oxyhalogens to urea and sulfate. The reaction is exceedingly slow, giving urea and sulfate with a stoichiometric ratio of 5 : 14 FDS to chlorine dioxide after an incubation period of up to 72 h and only in highly acidic media which discourages the disproportionation of chlorine dioxide to the oxidatively inert chlorate. Mass spectrometric data suggest that the oxidative pathway proceeds predominantly through the sulfinic acid, proceeding next to the products sulfate and urea, while by-passing the sulfonic acid. Transient formation of the unstable sulfenic acid was also not observed.
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Olagunju O, Siegel PD, Olojo R, Simoyi RH. Oxyhalogen−Sulfur Chemistry: Kinetics and Mechanism of Oxidation of N-Acetylthiourea by Chlorite and Chlorine Dioxide. J Phys Chem A 2006; 110:2396-410. [PMID: 16480299 DOI: 10.1021/jp055805d] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The oxidation reactions of N-acetylthiourea (ACTU) by chlorite and chlorine dioxide were studied in slightly acidic media. The ACTU-ClO(2)(-) reaction has a complex dependence on acid with acid catalysis in pH > 2 followed by acid retardation in higher acid conditions. In excess chlorite conditions the reaction is characterized by a very short induction period followed by a sudden and rapid formation of chlorine dioxide and sulfate. In some ratios of oxidant to reductant mixtures, oligo-oscillatory formation of chlorine dioxide is observed. The stoichiometry of the reaction is 2:1, with a complete desulfurization of the ACTU thiocarbamide to produce the corresponding urea product: 2ClO(2)(-) + CH(3)CONH(NH(2))C=S + H(2)O --> CH(3)CONH(NH(2))C=O + SO(4)(2-) + 2Cl(-) + 2H(+) (A). The reaction of chlorine dioxide and ACTU is extremely rapid and autocatalytic. The stoichiometry of this reaction is 8ClO(2)(aq) + 5CH(3)CONH(NH(2))C=S + 9H(2)O --> 5CH(3)CONH(NH(2))C=O + 5SO(4)(2-) + 8Cl(-) + 18H(+) (B). The ACTU-ClO(2)(-) reaction shows a much stronger HOCl autocatalysis than that which has been observed with other oxychlorine-thiocarbamide reactions. The reaction of chlorine dioxide with ACTU involves the initial formation of an adduct which hydrolyses to eliminate an unstable oxychlorine intermediate HClO(2)(-) which then combines with another ClO(2) molecule to produce and accumulate ClO(2)(-). The oxidation of ACTU involves the successive oxidation of the sulfur center through the sulfenic and sulfinic acids. Oxidation of the sulfinic acid by chlorine dioxide proceeds directly to sulfate bypassing the sulfonic acid. Sulfonic acids are inert to further oxidation and are only oxidized to sulfate via an initial hydrolysis reaction to yield bisulfite, which is then rapidly oxidized. Chlorine dioxide production after the induction period is due to the reaction of the intermediate HOCl species with ClO(2)(-). Oligo-oscillatory behavior arises from the fact that reactions that form ClO(2) are comparable in magnitude to those that consume ClO(2), and hence the assertion of each set of reactions is based on availability of reagents that fuel them. A computer simulation study involving 30 elementary and composite reactions gave a good fit to the induction period observed in the formation of chlorine dioxide and in the autocatalytic consumption of ACTU in its oxidation by ClO(2).
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Affiliation(s)
- Olufunke Olagunju
- Department of Chemistry, Portland State University, Portland, Oregon 97207-0751, USA
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Abstract
A clock reaction produced by mixing chlorate and iodine solutions in perchloric acid media is reported. This is the first example of a clock reaction using chlorate as a reagent. Increasing chlorate and acid concentration reduces the induction period. Changing the initial iodine concentration does not affect the length of the induction period. The discovery of this clock reaction opens the possibility that a new family of oscillation reactions can be built using chlorate as reagent.
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Affiliation(s)
- André P Oliveira
- Instituto de Química, Universidade Federal do Rio de Janeiro, Caixa Postal 68563, Rio de Janeiro, RJ, 21945-970 Brazil
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Chigwada TR, Simoyi RH. S-Oxygenation of Thiocarbamides II: Oxidation of Trimethylthiourea by Chlorite and Chlorine Dioxide. J Phys Chem A 2005; 109:1094-104. [PMID: 16833418 DOI: 10.1021/jp045650u] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The kinetics of the oxidation of a substituted thiourea, trimethylthiourea (TMTU), by chlorite have been studied in slightly acidic media. The reaction is much faster than the comparable oxidation of the unsubstituted thiourea by chlorite. The stoichiometry of the reaction was experimentally deduced to be 2ClO2- + Me2N(NHMe)C=S + H2O --> 2Cl- + Me2N(NHMe)C=O + SO4(2-) + 2H+. In excess chlorite conditions, chlorine dioxide is formed after a short induction period. The oxidation of TMTU occurs in two phases. It starts initially with S-oxygenation of the sulfur center to yield the sulfinic acid, which then reacts in the second phase predominantly through an initial hydrolysis to produce trimethylurea and the sulfoxylate anion. The sulfoxylate anion is a highly reducing species which is rapidly oxidized to sulfate. The sulfinic and sulfonic acids of TMTU exists in the form of zwitterionic species that are stable in acidic environments and rapidly decompose in basic environments. The rate of oxidation of the sulfonic acid is determined by its rate of hydrolysis, which is inhibited by acid. The direct reaction of chlorine dioxide and TMTU is autocatalytic and also inhibited by acid. It commences with the initial formation of an adduct of the radical chlorine dioxide species with the electron-rich sulfur center of the thiocarbamide followed by reaction of the adduct with another chlorine dioxide molecule and subsequent hydrolysis to yield chlorite and a sulfenic acid. The bimolecular rate constant for the reaction of chlorine dioxide and TMTU was experimentally determined as 16 +/- 3.0 M(-1) s(-1) at pH 1.00.
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Affiliation(s)
- Tabitha R Chigwada
- Department of Chemistry, Portland State University, Portland, Oregon 97207-0751, USA
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Chigwada TR, Chikwana E, Simoyi RH. S-Oxygenation of Thiocarbamides I: Oxidation of Phenylthiourea by Chlorite in Acidic Media. J Phys Chem A 2005; 109:1081-93. [PMID: 16833417 DOI: 10.1021/jp0458654] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The oxidation of 1-phenyl-2-thiourea (PTU) by chlorite was studied in aqueous acidic media. The reaction is extremely complex with reaction dynamics strongly influenced by the pH of reaction medium. In excess chlorite concentrations the reaction stoichiometry involves the complete desulfurization of PTU to yield a urea residue and sulfate: 2ClO2- + PhN(H)CSNH2 + H2O --> SO4(2-) + PhN(H)CONH2 + 2Cl- + 2H+. In excess PTU, mixtures of sulfinic and sulfonic acids are formed. The reaction was followed spectrophotometrically by observing the formation of chlorine dioxide which is formed from the reaction of the reactive intermediate HOCl and chlorite: 2ClO2- + HOCl + H+ --> 2ClO2(aq) + Cl- + H2O. The complexity of the ClO2- - PTU reaction arises from the fact that the reaction of ClO2 with PTU is slow enough to allow the accumulation of ClO2 in the presence of PTU. Hence the formation of ClO2 was observed to be oligooscillatory with transient formation of ClO2 even in conditions of excess oxidant. The reaction showed complex acid dependence with acid catalysis in pH conditions higher than pKa of HClO2 and acid retardation in pH conditions of less than 2.0. The rate of oxidation of PTU was given by -d[PTU]/dt = k1[ClO2-][PTU] + k2[HClO2][PTU] with the rate law: -d[PTU]/dt = [Cl(III)](T)[PTU]0/K(a1) + [H+] [k1K(a1) + k2[H+]]; where [Cl(III)]T is the sum of chlorite and chlorous acid and K(a1) is the acid dissociation constant for chlorous acid. The following bimolecular rate constants were evaluated; k1 = 31.5+/-2.3 M(-1) s(-1) and k2 = 114+/-7 M(-1) s(-1). The direct reaction of ClO2 with PTU was autocatalytic in low acid concentrations with a stoichiometric ratio of 8:5; 8ClO2 + 5PhN(H)CSNH2 + 9H2O --> 5SO4(2-) + 5PhN(H)CONH2 + 8Cl- + 18H+. The proposed mechanism implicates HOCl as a major intermediate whose autocatalytic production determined the observed global dynamics of the reaction. A comprehensive 29-reaction scheme is evoked to describe the complex reaction dynamics.
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Affiliation(s)
- Tabitha R Chigwada
- Department of Chemistry, Portland State University, Portland, Oregon 97207-0751, USA
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Darkwa J, Olojo R, Olagunju O, Otoikhian A, Simoyi R. Oxyhalogen−Sulfur Chemistry: Oxidation of N-Acetylcysteine by Chlorite and Acidic Bromate. J Phys Chem A 2003. [DOI: 10.1021/jp0349841] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- James Darkwa
- Department of Chemistry, University of the Western Cape, Bellville 7535, South Africa
| | - Rotimi Olojo
- Department of Chemistry, Portland State University, P.O. Box 751, Portland, Oregon 97207-0751
| | - Olufunke Olagunju
- Department of Chemistry, Portland State University, P.O. Box 751, Portland, Oregon 97207-0751
| | - Adenike Otoikhian
- Department of Chemistry, Portland State University, P.O. Box 751, Portland, Oregon 97207-0751
| | - Reuben Simoyi
- Department of Chemistry, Portland State University, P.O. Box 751, Portland, Oregon 97207-0751
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Jonnalagadda SB, Shezi M, Pare B. Uncatalyzed and ruthenium(III)-catalyzed reaction of acidic chlorite with methylene violet. INT J CHEM KINET 2003. [DOI: 10.1002/kin.10128] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Vanishingly slow kinetics of the ClO2/Cl− reaction: its questionable significance in nonlinear chlorite reactions. Coord Chem Rev 1999. [DOI: 10.1016/s0010-8545(99)00092-2] [Citation(s) in RCA: 21] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Martincigh BS, Mundoma C, Simoyi RH. Antioxidant Chemistry: Hypotaurine−Taurine Oxidation by Chlorite. J Phys Chem A 1998. [DOI: 10.1021/jp982575c] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Affiliation(s)
- Bice S. Martincigh
- Department of Chemistry and Applied Chemistry, University of Natal, Private Bag X10, Dalbridge 4014, Republic of South Africa
| | - Claudius Mundoma
- Department of Chemistry, West Virginia University, Morgantown, West Virginia 26506-6045
| | - Reuben H. Simoyi
- Department of Chemistry, West Virginia University, Morgantown, West Virginia 26506-6045
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Makarov SV, Mundoma C, Penn JH, Svarovsky SA, Simoyi RH. New and Surprising Experimental Results from the Oxidation of Sulfinic and Sulfonic Acids. J Phys Chem A 1998. [DOI: 10.1021/jp981713v] [Citation(s) in RCA: 22] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Sergei V. Makarov
- Department of Physical Chemistry, Institute of Chemistry and Technology, Ivanovo, Engels Str. 7, 153460 Russia
| | - Claudius Mundoma
- Department of Chemistry, West Virginia University, Morgantown, West Virginia 26506-6045
| | - John H. Penn
- Department of Chemistry, West Virginia University, Morgantown, West Virginia 26506-6045
| | - Serge A. Svarovsky
- Department of Chemistry, West Virginia University, Morgantown, West Virginia 26506-6045
| | - Reuben H. Simoyi
- Department of Chemistry, West Virginia University, Morgantown, West Virginia 26506-6045
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Chinake CR, Olojo O, Simoyi RH. Oxidation of Formaldehyde by Chlorite in Basic and Slightly Acidic Media. J Phys Chem A 1998. [DOI: 10.1021/jp972884n] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Cordelia R. Chinake
- Department of Chemistry, University of Natal, Box X01, Scottsville 3209, South Africa
| | - Oluwarotimi Olojo
- Department of Chemistry, West Virginia University, Morgantown, West Virginia 26506-6045
| | - Reuben H. Simoyi
- Department of Chemistry, West Virginia University, Morgantown, West Virginia 26506-6045
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